NO01G04620, NO01G04620 (gene) Nannochloropsis oceanica

Overview
NameNO01G04620
Unique NameNO01G04620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2307
Alignment locationchr1:1218954..1221260 +

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Properties
Property NameValue
DescriptionRibonucleoprotein LSM
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1218954..1221260 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR025762DFDF
IPR025768TFG_box
IPR025761FFD_box
IPR025609Lsm14_N
IPR019050FDF_dom
Homology
[Close]
BLAST of NO01G04620 vs. NCBI_GenBank
Match: EEE65764.1 (hypothetical protein OsJ_21436 [Oryza sativa Japonica Group])

HSP 1 Score: 89.7 bits (221), Expect = 2.000e-14
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 0 
Query:    2 AAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAP 84
            AAP   IGS ISL S  +IRYEG+L++I+ E+S + L+ V+  GTEGR   DGQ  PA D +Y+YILF  SDIKDL V  +P
Sbjct:    5 AAPESYIGSVISLTSKSEIRYEGVLYTINTEESSIGLRNVRSFGTEGR-KKDGQQIPASDKIYEYILFRGSDIKDLQVKSSP 85
[Close]
BLAST of NO01G04620 vs. NCBI_GenBank
Match: BAD46512.1 (alphaSNBP(B)-like [Oryza sativa Japonica Group] >BAF19607.1 Os06g0496000 [Oryza sativa Japonica Group] >BAS97894.1 Os06g0496000 [Oryza sativa Japonica Group])

HSP 1 Score: 89.7 bits (221), Expect = 2.000e-14
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 0 
Query:    2 AAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAP 84
            AAP   IGS ISL S  +IRYEG+L++I+ E+S + L+ V+  GTEGR   DGQ  PA D +Y+YILF  SDIKDL V  +P
Sbjct:    5 AAPESYIGSVISLTSKSEIRYEGVLYTINTEESSIGLRNVRSFGTEGR-KKDGQQIPASDKIYEYILFRGSDIKDLQVKSSP 85
[Close]
BLAST of NO01G04620 vs. NCBI_GenBank
Match: CBJ49106.1 (Novel Sm-like protein with long N-and C-terminal domains [Ectocarpus siliculosus])

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-14
Identity = 46/83 (55.42%), Postives = 54/83 (65.06%), Query Frame = 0 
Query:    5 GKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPA 88
            G L+GS ISLIS KDIR+EGIL  +D+E + VTLQ VK  GTEGR   D Q  P  D L+  + F   DIKDLHVH+    PA
Sbjct:    3 GDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNVKSWGTEGRLEGD-QQIPPSDHLHACVNFRGEDIKDLHVHETAEAPA 84
[Close]
BLAST of NO01G04620 vs. NCBI_GenBank
Match: BAJ86682.1 (predicted protein, partial [Hordeum vulgare subsp. vulgare] >BAJ95794.1 predicted protein, partial [Hordeum vulgare subsp. vulgare] >BAJ92037.1 predicted protein, partial [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-14
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 0 
Query:    2 AAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAAS 90
            AAP   IGS ISL S  +IRYEG+L++I+ E+S + L+ V+  G+EGR   DGQ  PA D +Y+YILF  SDIKDL V  +P    AS
Sbjct:    8 AAPETYIGSVISLTSKSEIRYEGVLYTINTEESSIGLRNVRSFGSEGR-KKDGQQIPASDKIYEYILFRGSDIKDLQVKSSPPAQPAS 94
[Close]
BLAST of NO01G04620 vs. NCBI_GenBank
Match: XP_004965366.1 (protein decapping 5 isoform X1 [Setaria italica] >KQL10533.1 hypothetical protein SETIT_006027mg [Setaria italica])

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-14
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 0 
Query:    2 AAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAAS 90
            AAP   IGS ISL S  +IRYEG+L++I+ E+S + L+ V+  GTEGR   DGQ  PA D +Y+YILF  SDIKDL V  +P    A+
Sbjct:    7 AAPESYIGSVISLTSKSEIRYEGVLYTINTEESNIGLRNVRSFGTEGR-KKDGQQIPASDKIYEYILFRGSDIKDLQVKSSPPAQLAT 93
[Close]
BLAST of NO01G04620 vs. NCBI_GenBank
Match: XP_012701060.1 (protein decapping 5 isoform X3 [Setaria italica] >KQL10532.1 hypothetical protein SETIT_006027mg [Setaria italica])

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-14
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 0 
Query:    2 AAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAAS 90
            AAP   IGS ISL S  +IRYEG+L++I+ E+S + L+ V+  GTEGR   DGQ  PA D +Y+YILF  SDIKDL V  +P    A+
Sbjct:    7 AAPESYIGSVISLTSKSEIRYEGVLYTINTEESNIGLRNVRSFGTEGR-KKDGQQIPASDKIYEYILFRGSDIKDLQVKSSPPAQLAT 93
[Close]
BLAST of NO01G04620 vs. NCBI_GenBank
Match: XP_016604721.1 (hypothetical protein SPPG_07894 [Spizellomyces punctatus DAOM BR117] >KNC96681.1 hypothetical protein SPPG_07894 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-14
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 0 
Query:    8 IGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAASAPAPKAVP 98
            IGS ISLIS  DIRY GIL  I+Q++S V L+ V+  GTEGR     +  P  D +Y +++F  SD+KDLHV +AP    A APAP  VP
Sbjct:    5 IGSEISLISKSDIRYVGILTEINQQESTVALENVRSFGTEGRKGNPAEELPPSDEIYPFVVFRGSDVKDLHVMNAP----AKAPAPSRVP 90
[Close]
BLAST of NO01G04620 vs. NCBI_GenBank
Match: XP_022681681.1 (protein decapping 5 isoform X2 [Setaria italica])

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-14
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 0 
Query:    2 AAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAAS 90
            AAP   IGS ISL S  +IRYEG+L++I+ E+S + L+ V+  GTEGR   DGQ  PA D +Y+YILF  SDIKDL V  +P    A+
Sbjct:    7 AAPESYIGSVISLTSKSEIRYEGVLYTINTEESNIGLRNVRSFGTEGR-KKDGQQIPASDKIYEYILFRGSDIKDLQVKSSPPAQLAT 93
[Close]
BLAST of NO01G04620 vs. NCBI_GenBank
Match: XP_022681682.1 (protein decapping 5 isoform X4 [Setaria italica])

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-14
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 0 
Query:    2 AAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAAS 90
            AAP   IGS ISL S  +IRYEG+L++I+ E+S + L+ V+  GTEGR   DGQ  PA D +Y+YILF  SDIKDL V  +P    A+
Sbjct:    7 AAPESYIGSVISLTSKSEIRYEGVLYTINTEESNIGLRNVRSFGTEGR-KKDGQQIPASDKIYEYILFRGSDIKDLQVKSSPPAQLAT 93
[Close]
BLAST of NO01G04620 vs. NCBI_GenBank
Match: XP_017626327.1 (PREDICTED: protein decapping 5-like isoform X1 [Gossypium arboreum] >KHG21331.1 Protein LSM14 A-B [Gossypium arboreum])

HSP 1 Score: 89.0 bits (219), Expect = 3.400e-14
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 0 
Query:    3 APGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAASAPAP 94
            +P   IGS ISL S  +IRYEG+LF+I+ E+S + L+ V+  GTEGR   DG   PA D +Y+YILF  SDIKDL V  +P  P    PAP
Sbjct:   14 SPDSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGR-KKDGPQVPASDKIYEYILFRGSDIKDLQVKSSP--PPVQTPAP 101
The following BLAST results are available for this feature:
BLAST of NO01G04620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EEE65764.12.000e-1454.88hypothetical protein OsJ_21436 [Oryza sativa Japon... [more]
BAD46512.12.000e-1454.88alphaSNBP(B)-like [Oryza sativa Japonica Group] >B... [more]
CBJ49106.12.600e-1455.42Novel Sm-like protein with long N-and C-terminal d... [more]
BAJ86682.12.600e-1452.27predicted protein, partial [Hordeum vulgare subsp.... [more]
XP_004965366.12.600e-1452.27protein decapping 5 isoform X1 [Setaria italica] >... [more]
XP_012701060.12.600e-1452.27protein decapping 5 isoform X3 [Setaria italica] >... [more]
XP_016604721.12.600e-1451.11hypothetical protein SPPG_07894 [Spizellomyces pun... [more]
XP_022681681.12.600e-1452.27protein decapping 5 isoform X2 [Setaria italica][more]
XP_022681682.12.600e-1452.27protein decapping 5 isoform X4 [Setaria italica][more]
XP_017626327.13.400e-1451.65PREDICTED: protein decapping 5-like isoform X1 [Go... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007812NSK007812Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04620.1NO01G04620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|243330gene_482Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100042g3gene1240Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04620.1NO01G04620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04620 ID=NO01G04620|Name=NO01G04620|organism=Nannochloropsis oceanica|type=gene|length=2307bp
ATGGCGGCACCGGGCAAGCTTATCGGCTCGCACATCAGCCTCATCTCCAA
CAAGGACATCCGGTACGAAGGCATACTCTTCTCTATTGACCAAGAGAAGT
CCTGCGTCACCTTGCAAGCAGTCAAGTGCCTCGGCACCGAAGGCCGGACC
CCCGCAGACGGACAGGCGTATCCGGCTGATGACACCTTGTACGATTACAT
CCTATTCGAGGCTTCGGACATCAAGGACTTGCACGTCCACGACGCCCCCT
CTACCCCAGCCGCTTCTGCTCCCGCACCCAAGGCCGTTCCTGCTTCCCAA
CAGCAGCAGCAGCAACAAGCACCGCCGCAGCCGCAACAAGCTTCGAGACC
ACCATCACAACAGCAGCAGCAGTATCAGCAGCAACGTCCAGTGGGTGCTG
GTGGTCGTGGAGCCCCAAGAGGAGGACGATACAGCACACGAGGAGGAGGA
GGAGGACGAGGAGGAGGGCGAGGGGGAGGGATTGGAGGAGATCGTCCCAC
CGTCTCCGGCCCTTTGCCTGGCACAGGCGGGCATTTATTAAACCGACGAG
GAAAGGTTGAGGGAGCGTCTCAGGGCGGACCGGAGGGAGGGGAGGGTGAG
TTTGATTTCCAAGAGGCGCTGCAGGGTTTTAATAAAGAGGAGGAGTTCTC
GAAGTTGGCTGTTAACGACGACAACACCAGCATCAGCAACAACGATACCG
AGGCAGGTGGAGCGGGAGCCACGGAGGGCGGCGGAAATATCGAGGGTGCG
ACGACGGCGGCAGTAGCAGCAGCGGTGGTTCCGGAAGTAAAGAAATATAA
CAAGAGCTCATTCTTTGACGACCTAAGCTCGGGACAAGGGATGGGAGGGC
GGCCGACCCTGGCAGAGGAGAGGAAGACGAACATGGACACGTTTGGCGTG
GCTGCGCTACACAACCCCAACAATCGTCGGTTCGGAGGAGGGAGAGGAGG
GGGCCGTGGTGGGTCTTTCAGGGGTGGGGGCGGACGGGGTGGGGGGAGGG
GTCGTGGGGGGTATAGGGGAGGGAGGGGGGGAGGGAGGGGATACGCCCCG
GCCGCCCAGGGCGGGGGAGGAGCACCGGTACAGGCTTAAGTGGAGGGAGG
AAAAGAGAAGGGGAGAGATGAGAGGGTTGGTGGTCGTGGATGGGACGAAT
GGAAGAGACGGAGGAGGAGGAGGAGGAGGAGGACGACGACGAGGACGAGA
GGAGGAGTGGAGGTAAGAGTGTCTGTACTTGGCATGCACTGCGGCGACTG
ACATCATTCGCGGGCGGGAGAATGAGGGATCACATTAAAAGGGAAGTCTT
CTTCGAGGAGAAGGAGGAGGAGGACGCACCTTAGCGAGAGGTAGGGAGAA
ACAGGGAGATAGGAGAGATCAGTACGGGAAAGTACATGCTGTGATCTGAT
GAAGAGGCAACAGAGACAACGCAAAAACACGCGCATTTATGGAGAACTTA
CGAAAAGGCTGCATCAGCAGGAGGAGCAGTAGCAGCATCATAGAAAAGCA
CATCCCCCCCCAACAAGAACGAGACAGTCAAATTTTTAAGTGCTGTCGAG
GAGGAGGAAGGGGGAGGAAGAGGAGTAGAGTCAGGAGGAATGAGGGGAGG
ATATGGAATTAAAAGATTATTTCTTTTCATACTTCGAAGGAGTAGTAGAT
GTAAGGACGACGATATAGAGAGGAGGGGGTGAGATAGGCAGAGGAAGAAG
AAAGAAGGATAACATGAAGATGGATCAGAAGGAGAAGCCCGAAGAGTAGA
AAAGAAGTATGAGAGAAGATAAAAGATGAATACGAAGAAAAGAAGGAGTG
GGGGAAAGAACGGTTGAGGCAGGGGTATGGAGACAGCAGACGGAGAACAA
ACCGTCGAAAGGGAGAGCTTGAGGGAGGGAGGGAGGGAGGGAGGGAGAGT
AGGGAACAGAGAGAGAGAAGGAAAGAACGATGGGAAGGGTGTGGTGGCTC
GGCTGGGTCGGGCAGTTCATCAGTTGAATTCTTCGGCAGGGTGGAGGCTT
GTGTGATTGTGCGTTGTATGGGTGTTGGCAGGCAGACAGAGAGACTTGTA
CGACGAAAACGAGCTAGCAGACGGGCAAGCCAGGATAGGATTGCGAGGAG
AAGGGAATAGATTAGTTGAGGGCGAGAATCTGTTCGAAGAGCGATAATGA
TTGCGGCAAGAAGCGCCGCATGGTCGACAACGACGAAGAGAAAGGCAGGG
CTTCCGGGTACCATGTCATCGAACCGTCAAATGTACGCCTGGTAGTGAGC
GGACAGCAAACAAATTCCCAGCTCTGGCCAAAAAGGAACAATGATCGACT
CCCTCGC
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protein sequence of NO01G04620.1

>NO01G04620.1-protein ID=NO01G04620.1-protein|Name=NO01G04620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MAAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRT
PADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAASAPAPKAVPASQ
QQQQQQAPPQPQQASRPPSQQQQQYQQQRPVGAGGRGAPRGGRYSTRGGG
GGRGGGRGGGIGGDRPTVSGPLPGTGGHLLNRRGKVEGASQGGPEGGEGE
FDFQEALQGFNKEEEFSKLAVNDDNTSISNNDTEAGGAGATEGGGNIEGA
TTAAVAAAVVPEVKKYNKSSFFDDLSSGQGMGGRPTLAEERKTNMDTFGV
AALHNPNNRRFGGGRGGGRGGSFRGGGGRGGGRGRGGYRGGRGGGRGYAP
AAQGGGGAPVQA*
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Synonyms
Publications