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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1218954..1221260 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04620.1 vs.
Match: EWM29417.1 (ribonucleoprotein LSM [Nannochloropsis gaditana]) HSP 1 Score: 220.7 bits (561), Expect = 7.400e-54 Identity = 155/255 (60.78%), Postives = 173/255 (67.84%), Query Frame = 0
Query: 1 MAAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPA-ASAPA---PKAVPASQQQQQQQAPPQPQQASRPPSQQQQQYQQQRPVGAGGRGAPRGGRYSTRGGGGGRGG--GRGGGIGGDRPTVSGPLPGTGGHLLNRRGKVEGASQGGPEGGEGEFDFQEALQGFNKEEEFSKLAVNDDNTSISNNDTEAGGAGATEGGGNIEG 250
M PGKLIGS ISL+SNKDIRYEG+L++IDQEKS VTLQ+VKC GTEGRT A GQ Y DD +YDYILFEASDIKDLHVH+A S PA A +PA P + PA QQ QQ QP S PP +QQQQ Q RP G GA RGGR S GGGRGG GRGG GG G LPGTGGHLL RRGK EG + GGPE G+GEFDF+ ALQGFNKEEE +KL+V ++ + G G GGGN G
Sbjct: 1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGA-GQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQ--QPLTKSAPPQRQQQQ--QARPAAGGRGGASRGGRGSY---GGGRGGVRGRGGREGG------GALPGTGGHLLGRRGKTEGGASGGPEKGQGEFDFESALQGFNKEEEMAKLSVKEE-AGGEGGAVGSEGTGGAGGGGNDPG 240
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04620.1 ID=NO01G04620.1|Name=NO01G04620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2307bp ATGGCGGCACCGGGCAAGCTTATCGGCTCGCACATCAGCCTCATCTCCAA CAAGGACATCCGGTACGAAGGCATACTCTTCTCTATTGACCAAGAGAAGT CCTGCGTCACCTTGCAAGCAGTCAAGTGCCTCGGCACCGAAGGCCGGACC CCCGCAGACGGACAGGCGTATCCGGCTGATGACACCTTGTACGATTACAT CCTATTCGAGGCTTCGGACATCAAGGACTTGCACGTCCACGACGCCCCCT CTACCCCAGCCGCTTCTGCTCCCGCACCCAAGGCCGTTCCTGCTTCCCAA CAGCAGCAGCAGCAACAAGCACCGCCGCAGCCGCAACAAGCTTCGAGACC ACCATCACAACAGCAGCAGCAGTATCAGCAGCAACGTCCAGTGGGTGCTG GTGGTCGTGGAGCCCCAAGAGGAGGACGATACAGCACACGAGGAGGAGGA GGAGGACGAGGAGGAGGGCGAGGGGGAGGGATTGGAGGAGATCGTCCCAC CGTCTCCGGCCCTTTGCCTGGCACAGGCGGGCATTTATTAAACCGACGAG GAAAGGTTGAGGGAGCGTCTCAGGGCGGACCGGAGGGAGGGGAGGGTGAG TTTGATTTCCAAGAGGCGCTGCAGGGTTTTAATAAAGAGGAGGAGTTCTC GAAGTTGGCTGTTAACGACGACAACACCAGCATCAGCAACAACGATACCG AGGCAGGTGGAGCGGGAGCCACGGAGGGCGGCGGAAATATCGAGGGTGCG ACGACGGCGGCAGTAGCAGCAGCGGTGGTTCCGGAAGTAAAGAAATATAA CAAGAGCTCATTCTTTGACGACCTAAGCTCGGGACAAGGGATGGGAGGGC GGCCGACCCTGGCAGAGGAGAGGAAGACGAACATGGACACGTTTGGCGTG GCTGCGCTACACAACCCCAACAATCGTCGGTTCGGAGGAGGGAGAGGAGG GGGCCGTGGTGGGTCTTTCAGGGGTGGGGGCGGACGGGGTGGGGGGAGGG GTCGTGGGGGGTATAGGGGAGGGAGGGGGGGAGGGAGGGGATACGCCCCG GCCGCCCAGGGCGGGGGAGGAGCACCGGTACAGGCTTAAGTGGAGGGAGG AAAAGAGAAGGGGAGAGATGAGAGGGTTGGTGGTCGTGGATGGGACGAAT GGAAGAGACGGAGGAGGAGGAGGAGGAGGAGGACGACGACGAGGACGAGA GGAGGAGTGGAGGTAAGAGTGTCTGTACTTGGCATGCACTGCGGCGACTG ACATCATTCGCGGGCGGGAGAATGAGGGATCACATTAAAAGGGAAGTCTT CTTCGAGGAGAAGGAGGAGGAGGACGCACCTTAGCGAGAGGTAGGGAGAA ACAGGGAGATAGGAGAGATCAGTACGGGAAAGTACATGCTGTGATCTGAT GAAGAGGCAACAGAGACAACGCAAAAACACGCGCATTTATGGAGAACTTA CGAAAAGGCTGCATCAGCAGGAGGAGCAGTAGCAGCATCATAGAAAAGCA CATCCCCCCCCAACAAGAACGAGACAGTCAAATTTTTAAGTGCTGTCGAG GAGGAGGAAGGGGGAGGAAGAGGAGTAGAGTCAGGAGGAATGAGGGGAGG ATATGGAATTAAAAGATTATTTCTTTTCATACTTCGAAGGAGTAGTAGAT GTAAGGACGACGATATAGAGAGGAGGGGGTGAGATAGGCAGAGGAAGAAG AAAGAAGGATAACATGAAGATGGATCAGAAGGAGAAGCCCGAAGAGTAGA AAAGAAGTATGAGAGAAGATAAAAGATGAATACGAAGAAAAGAAGGAGTG GGGGAAAGAACGGTTGAGGCAGGGGTATGGAGACAGCAGACGGAGAACAA ACCGTCGAAAGGGAGAGCTTGAGGGAGGGAGGGAGGGAGGGAGGGAGAGT AGGGAACAGAGAGAGAGAAGGAAAGAACGATGGGAAGGGTGTGGTGGCTC GGCTGGGTCGGGCAGTTCATCAGTTGAATTCTTCGGCAGGGTGGAGGCTT GTGTGATTGTGCGTTGTATGGGTGTTGGCAGGCAGACAGAGAGACTTGTA CGACGAAAACGAGCTAGCAGACGGGCAAGCCAGGATAGGATTGCGAGGAG AAGGGAATAGATTAGTTGAGGGCGAGAATCTGTTCGAAGAGCGATAATGA TTGCGGCAAGAAGCGCCGCATGGTCGACAACGACGAAGAGAAAGGCAGGG CTTCCGGGTACCATGTCATCGAACCGTCAAATGTACGCCTGGTAGTGAGC GGACAGCAAACAAATTCCCAGCTCTGGCCAAAAAGGAACAATGATCGACT CCCTCGC back to topprotein sequence of NO01G04620.1 >NO01G04620.1-protein ID=NO01G04620.1-protein|Name=NO01G04620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp MAAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRT PADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAASAPAPKAVPASQ QQQQQQAPPQPQQASRPPSQQQQQYQQQRPVGAGGRGAPRGGRYSTRGGG GGRGGGRGGGIGGDRPTVSGPLPGTGGHLLNRRGKVEGASQGGPEGGEGE FDFQEALQGFNKEEEFSKLAVNDDNTSISNNDTEAGGAGATEGGGNIEGA TTAAVAAAVVPEVKKYNKSSFFDDLSSGQGMGGRPTLAEERKTNMDTFGV AALHNPNNRRFGGGRGGGRGGSFRGGGGRGGGRGRGGYRGGRGGGRGYAP AAQGGGGAPVQA* back to topmRNA from alignment at chr1:1218954..1221260+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04620.1 ID=NO01G04620.1|Name=NO01G04620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2307bp|location=Sequence derived from alignment at chr1:1218954..1221260+ (Nannochloropsis oceanica) ATGGCGGCACCGGGCAAGCTTATCGGCTCGCACATCAGCCTCATCTCCAA
CAAGGACATCCGGTACGAAGGCATACTCTTCTCTATTGACCAAGAGAAGT
CCTGCGTCACCTTGCAAGCAGTCAAGTGCCTCGGCACCGAAGGCCGGACC
CCCGCAGACGGACAGGCGTATCCGGCTGATGACACCTTGTACGATTACAT
CCTATTCGAGGCTTCGGACATCAAGGACTTGCACGTCCACGACGCCCCCT
CTACCCCAGCCGCTTCTGCTCCCGCACCCAAGGCCGTTCCTGCTTCCCAA
CAGCAGCAGCAGCAACAAGCACCGCCGCAGCCGCAACAAGCTTCGAGACC
ACCATCACAACAGCAGCAGCAGTATCAGCAGCAACGTCCAGTGGGTGCTG
GTGGTCGTGGAGCCCCAAGAGGAGGACGATACAGCACACGAGGAGGAGGA
GGAGGACGAGGAGGAGGGCGAGGGGGAGGGATTGGAGGAGATCGTCCCAC
CGTCTCCGGCCCTTTGCCTGGCACAGGCGGGCATTTATTAAACCGACGAG
GAAAGGTTGAGGGAGCGTCTCAGGGCGGACCGGAGGGAGGGGAGGGTGAG
TTTGATTTCCAAGAGGCGCTGCAGGGTTTTAATAAAGAGGAGGAGTTCTC
GAAGTTGGCTGTTAACGACGACAACACCAGCATCAGCAACAACGATACCG
AGGCAGGTGGAGCGGGAGCCACGGAGGGCGGCGGAAATATCGAGGGTGCG
ACGACGGCGGCAGTAGCAGCAGCGGTGGTTCCGGAAGTAAAGAAATATAA
CAAGAGCTCATTCTTTGACGACCTAAGCTCGGGACAAGGGATGGGAGGGC
GGCCGACCCTGGCAGAGGAGAGGAAGACGAACATGGACACGTTTGGCGTG
GCTGCGCTACACAACCCCAACAATCGTCGGTTCGGAGGAGGGAGAGGAGG
GGGCCGTGGTGGGTCTTTCAGGGGTGGGGGCGGACGGGGTGGGGGGAGGG
GTCGTGGGGGGTATAGGGGAGGGAGGGGGGGAGGGAGGGGATACGCCCCG
GCCGCCCAGGGCGGGGGAGGAGCACCGGTACAGGCTTAAGTGGAGGGAGG
AAAAGAGAAGGGGAGAGATGAGAGGGTTGGTGGTCGTGGATGGGACGAAT
GGAAGAGACGGAGGAGGAGGAGGAGGAGGAGGACGACGACGAGGACGAGA
GGAGGAGTGGAGGTAAGAGTGTCTGTACTTGGCATGCACTGCGGCGACTG
ACATCATTCGCGGGCGGGAGAATGAGGGATCACATTAAAAGGGAAGTCTT
CTTCGAGGAGAAGGAGGAGGAGGACGCACCTTAGCGAGAGGTAGGGAGAA
ACAGGGAGATAGGAGAGATCAGTACGGGAAAGTACATGCTGTGATCTGAT
GAAGAGGCAACAGAGACAACGCAAAAACACGCGCATTTATGGAGAACTTA
CGAAAAGGCTGCATCAGCAGGAGGAGCAGTAGCAGCATCATAGAAAAGCA
CATCCCCCCCCAACAAGAACGAGACAGTCAAATTTTTAAGTGCTGTCGAG
GAGGAGGAAGGGGGAGGAAGAGGAGTAGAGTCAGGAGGAATGAGGGGAGG
ATATGGAATTAAAAGATTATTTCTTTTCATACTTCGAAGGAGTAGTAGAT
GTAAGGACGACGATATAGAGAGGAGGGGGTGAGATAGGCAGAGGAAGAAG
AAAGAAGGATAACATGAAGATGGATCAGAAGGAGAAGCCCGAAGAGTAGA
AAAGAAGTATGAGAGAAGATAAAAGATGAATACGAAGAAAAGAAGGAGTG
GGGGAAAGAACGGTTGAGGCAGGGGTATGGAGACAGCAGACGGAGAACAA
ACCGTCGAAAGGGAGAGCTTGAGGGAGGGAGGGAGGGAGGGAGGGAGAGT
AGGGAACAGAGAGAGAGAAGGAAAGAACGATGGGAAGGGTGTGGTGGCTC
GGCTGGGTCGGGCAGTTCATCAGTTGAATTCTTCGGCAGGGTGGAGGCTT
GTGTGATTGTGCGTTGTATGGGTGTTGGCAGGCAGACAGAGAGACTTGTA
CGACGAAAACGAGCTAGCAGACGGGCAAGCCAGGATAGGATTGCGAGGAG
AAGGGAATAGATTAGTTGAGGGCGAGAATCTGTTCGAAGAGCGATAATGA
TTGCGGCAAGAAGCGCCGCATGGTCGACAACGACGAAGAGAAAGGCAGGG
CTTCCGGGTACCATGTCATCGAACCGTCAAATGTACGCCTGGTAGTGAGC
GGACAGCAAACAAATTCCCAGCTCTGGCCAAAAAGGAACAATGATCGACT
CCCTCGC back to topCoding sequence (CDS) from alignment at chr1:1218954..1221260+ >NO01G04620.1 ID=NO01G04620.1|Name=NO01G04620.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr1:1218954..1221260+ (Nannochloropsis oceanica) ATGGCGGCACCGGGCAAGCTTATCGGCTCGCACATCAGCCTCATCTCCAA CAAGGACATCCGGTACGAAGGCATACTCTTCTCTATTGACCAAGAGAAGT CCTGCGTCACCTTGCAAGCAGTCAAGTGCCTCGGCACCGAAGGCCGGACC CCCGCAGACGGACAGGCGTATCCGGCTGATGACACCTTGTACGATTACAT CCTATTCGAGGCTTCGGACATCAAGGACTTGCACGTCCACGACGCCCCCT CTACCCCAGCCGCTTCTGCTCCCGCACCCAAGGCCGTTCCTGCTTCCCAA CAGCAGCAGCAGCAACAAGCACCGCCGCAGCCGCAACAAGCTTCGAGACC ACCATCACAACAGCAGCAGCAGTATCAGCAGCAACGTCCAGTGGGTGCTG GTGGTCGTGGAGCCCCAAGAGGAGGACGATACAGCACACGAGGAGGAGGA GGAGGACGAGGAGGAGGGCGAGGGGGAGGGATTGGAGGAGATCGTCCCAC CGTCTCCGGCCCTTTGCCTGGCACAGGCGGGCATTTATTAAACCGACGAG GAAAGGTTGAGGGAGCGTCTCAGGGCGGACCGGAGGGAGGGGAGGGTGAG TTTGATTTCCAAGAGGCGCTGCAGGGTTTTAATAAAGAGGAGGAGTTCTC GAAGTTGGCTGTTAACGACGACAACACCAGCATCAGCAACAACGATACCG AGGCAGGTGGAGCGGGAGCCACGGAGGGCGGCGGAAATATCGAGGGTGCG ACGACGGCGGCAGTAGCAGCAGCGGTGGTTCCGGAAGTAAAGAAATATAA CAAGAGCTCATTCTTTGACGACCTAAGCTCGGGACAAGGGATGGGAGGGC GGCCGACCCTGGCAGAGGAGAGGAAGACGAACATGGACACGTTTGGCGTG GCTGCGCTACACAACCCCAACAATCGTCGGTTCGGAGGAGGGAGAGGAGG GGGCCGTGGTGGGTCTTTCAGGGGTGGGGGCGGACGGGGTGGGGGGAGGG GTCGTGGGGGGTATAGGGGAGGGAGGGGGGGAGGGAGGGGATACGCCCCG GCCGCCCAGGGCGGGGGAGGAGCACCGGTACAGGCTTAA back to top
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