NO01G04620, NO01G04620 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G04620 vs. NCBI_GenBank
Match: XP_005854112.1 (hypothetical protein NGA_0450300, partial [Nannochloropsis gaditana CCMP526] >EKU22247.1 hypothetical protein NGA_0450300, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 132.1 bits (331), Expect = 3.500e-27 Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 0 Query: 1 MAAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPS 85 M PGKLIGS ISL+SNKDIRYEG+L++IDQEKS VTLQ+VKC GTEGRT A GQ Y DD +YDYILFEASDIKDLHVH+A S Sbjct: 1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGA-GQEYLPDDKVYDYILFEASDIKDLHVHEAAS 83
BLAST of NO01G04620 vs. NCBI_GenBank
Match: EWM29417.1 (ribonucleoprotein LSM [Nannochloropsis gaditana]) HSP 1 Score: 131.0 bits (328), Expect = 7.700e-27 Identity = 64/82 (78.05%), Postives = 71/82 (86.59%), Query Frame = 0 Query: 1 MAAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDA 83 M PGKLIGS ISL+SNKDIRYEG+L++IDQEKS VTLQ+VKC GTEGRT A GQ Y DD +YDYILFEASDIKDLHVH+A Sbjct: 1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGA-GQEYLPDDKVYDYILFEASDIKDLHVHEA 81
BLAST of NO01G04620 vs. NCBI_GenBank
Match: OEL20610.1 (Protein decapping 5 [Dichanthelium oligosanthes]) HSP 1 Score: 94.4 bits (233), Expect = 8.000e-16 Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 0 Query: 2 AAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAAS 90 AAP IGS ISL S +IRYEG+L++I+ E+S + L++V+ GTEGR DGQ PA D +Y+YILF SDIKDLHV +P A+ Sbjct: 3 AAPESYIGSVISLTSKSEIRYEGVLYTINTEESSIGLRSVRSFGTEGR-KKDGQQIPASDKIYEYILFRGSDIKDLHVKSSPPAQPAT 89
BLAST of NO01G04620 vs. NCBI_GenBank
Match: XP_004367978.1 (FFD and TFG box motifscontaining protein [Acanthamoeba castellanii str. Neff] >ELR25223.1 FFD and TFG box motifscontaining protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 94.0 bits (232), Expect = 1.000e-15 Identity = 51/89 (57.30%), Postives = 58/89 (65.17%), Query Frame = 0 Query: 3 APGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAASAP 92 AP IGS ISLIS IRYEGILFSID ++S V LQ V+ GTEGR DGQ P + +YDYI+F SDIKDL V + P PA P Sbjct: 5 APIPYIGSRISLISVSGIRYEGILFSIDPKQSTVALQNVRSFGTEGRR-KDGQQIPPSNNVYDYIIFRGSDIKDLQVCEPPPQPAQPQP 92
BLAST of NO01G04620 vs. NCBI_GenBank
Match: XP_002438363.1 (protein decapping 5 isoform X1 [Sorghum bicolor] >EER89730.1 hypothetical protein SORBI_3010G138200 [Sorghum bicolor] >OQU76369.1 hypothetical protein SORBI_3010G138200 [Sorghum bicolor]) HSP 1 Score: 92.0 bits (227), Expect = 4.000e-15 Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 0 Query: 2 AAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAAS 90 AAP IGS ISL+S +IRYEG+L++I+ E+S + L+ V+ GTEGR DGQ PA D +Y+YILF SDIKDL V +P + +A+ Sbjct: 7 AAPESYIGSLISLMSKSEIRYEGVLYTINTEESSIGLRNVRSFGTEGR-KKDGQQIPASDKIYEYILFRGSDIKDLQVKSSPPSQSAT 93
BLAST of NO01G04620 vs. NCBI_GenBank
Match: XP_021305220.1 (protein decapping 5 isoform X2 [Sorghum bicolor]) HSP 1 Score: 92.0 bits (227), Expect = 4.000e-15 Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 0 Query: 2 AAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAAS 90 AAP IGS ISL+S +IRYEG+L++I+ E+S + L+ V+ GTEGR DGQ PA D +Y+YILF SDIKDL V +P + +A+ Sbjct: 7 AAPESYIGSLISLMSKSEIRYEGVLYTINTEESSIGLRNVRSFGTEGR-KKDGQQIPASDKIYEYILFRGSDIKDLQVKSSPPSQSAT 93
BLAST of NO01G04620 vs. NCBI_GenBank
Match: XP_016272503.1 (G2/M transition checkpoint protein Sum2 [Rhodotorula toruloides NP11] >EMS21384.1 G2/M transition checkpoint protein Sum2 [Rhodotorula toruloides NP11] >CDR48458.1 RHTO0S18e00496g1_1 [Rhodotorula toruloides]) HSP 1 Score: 90.9 bits (224), Expect = 8.800e-15 Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 0 Query: 6 KLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAASAPAPKAV 97 + IGSHISL+S DIRY+G+L SID + V+L+ V+ LGTEGR + PA DT+YD+I+F ASD+KDL + +AP T SAP A+ Sbjct: 4 QFIGSHISLVSKSDIRYQGVLHSIDPAAATVSLERVRSLGTEGRKENPAEEVPASDTVYDFIVFRASDVKDLQI-EAP-TANDSAPQDPAI 92
BLAST of NO01G04620 vs. NCBI_GenBank
Match: XP_020685502.1 (protein decapping 5 [Dendrobium catenatum] >PKU62102.1 Protein decapping 5 [Dendrobium catenatum]) HSP 1 Score: 90.1 bits (222), Expect = 1.500e-14 Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 0 Query: 3 APGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAP---STPAASAPA 93 +P IGS I+L SN +IRYEGIL++I+ E+S + L+ V+ GTEGR DG PA D +Y+YILF SDIKDL V +P +TPA + PA Sbjct: 11 SPDSYIGSLITLTSNSEIRYEGILYNINTEESSIGLRNVRSFGTEGR-KKDGSQIPASDKIYEYILFRGSDIKDLQVKTSPPVQTTPAHNDPA 102
BLAST of NO01G04620 vs. NCBI_GenBank
Match: PRQ75576.1 (Scd6-like Sm domain-domain containing protein [Rhodotorula toruloides]) HSP 1 Score: 90.1 bits (222), Expect = 1.500e-14 Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 0 Query: 6 KLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAASAPAPKAV 97 + IGSHISL+S DIRY+G+L SID + V+L+ V+ LGTEGR + PA DT+YD+I+F ASD+KDL + +AP+ ++ P V Sbjct: 4 QFIGSHISLVSKSDIRYQGVLHSIDPAAATVSLERVRSLGTEGRKENPAEEVPASDTVYDFIVFRASDVKDLQI-EAPTANESTPQDPAIV 93
BLAST of NO01G04620 vs. NCBI_GenBank
Match: XP_006656110.1 (PREDICTED: protein decapping 5-like [Oryza brachyantha]) HSP 1 Score: 89.7 bits (221), Expect = 2.000e-14 Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 0 Query: 2 AAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAP 84 AAP IGS ISL S +IRYEG+L++I+ E+S + L+ V+ GTEGR DGQ PA D +Y+YILF SDIKDL V +P Sbjct: 8 AAPESYIGSVISLTSKSEIRYEGVLYTINTEESSIGLRNVRSFGTEGR-KKDGQQIPASDKIYEYILFRGSDIKDLQVKSSP 88 The following BLAST results are available for this feature:
BLAST of NO01G04620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G04620 ID=NO01G04620|Name=NO01G04620|organism=Nannochloropsis oceanica|type=gene|length=2307bpback to top protein sequence of NO01G04620.1 >NO01G04620.1-protein ID=NO01G04620.1-protein|Name=NO01G04620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bpback to top Synonyms
Publications
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