NO01G04570, NO01G04570 (gene) Nannochloropsis oceanica

Overview
NameNO01G04570
Unique NameNO01G04570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3789
Alignment locationchr1:1205792..1209580 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1205792..1209580 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G04570 vs. NCBI_GenBank
Match: EWM29351.1 (hypothetical protein Naga_100028g3 [Nannochloropsis gaditana])

HSP 1 Score: 560.1 bits (1442), Expect = 1.800e-155
Identity = 401/1202 (33.36%), Postives = 594/1202 (49.42%), Query Frame = 0 
Query:    7 SSSTATARLERMLQQQLEELHTIVSATVTXXXXXXXXXXXXXXXXXPVEDLAAAHDDDGSHASPSPAAFHKNDEDGHACLALCSSPLSSSVTSPSMSFSXXXXXDDEAFYHLASLPTTNTNI---GTTALEVHLSSIQQLLLDSDFYLQQRIFSLWKQKSWHAVRLHRRIRVAFDLLKQRALHTKPRMSMAKRHANFLSQGLFFEKAWRRLVQIDYRKALSMHGQRATLQRRARQFIHMLTRRVTCRCKGQLITLQRQFHLLHTSIYVWHNTKKCQQHLLRQENKLLIRCFLRWQGFIYTERASLEALTINLRARRAISAMVKEHNRLKSRANAALNLMAVRRMRRSLGQLWVMGCRRRRTMRLRDEWAFTIFYQTLAKRGMGALQRYLQAWREERQAWGLAMELEARNLARKTLKGWLHAAGRQAREMEELSQEGGEKRMRRRQAGAFQQLRLYAQHRHLAKILHGVVLLRKARRRLEEWKSCARERSKRRDLVIQHQQQRYRSLVLDFFFRWIRYHLLHLASQRVHTLNYSKLARQVLQTFHRALHISRSAQVIACRRRAKSQRQCLQWWTAAAMHFQKRRRLYMARGLRRWRLAVAQQRLQRGIETGLGGKARRRTIGRRGLAALLKWAETRRLGERRIIAASEXXXXXXXXXXHTALREWREGSKERYHWQCLEEDAGDWAQRRGKAVGLFAFTKCHGRRMLDGDTRKMA-EYFHRQRRLH--RGLMVLQRLRLSAVVLPAFRERAIRRWCLHREWGRLVVGHTRCVGDRQRQEQTALLAEGQWETRRLIIAVGQLERARILTRRVEEVQQHMHSQLVLQSLRMWTRETQIAQGLRRFQRRSQEWLLAGVMRAWGRWTAQQSVRRAALIELSQKARRAEYFHAWRGSIHRRKELQMRAREVMQLVEEGLLQRAWMFGWRVAYEDVCRERRSERLFLRYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFRLSLEGWGEAFRLARREEEAVQIMVERRAVQVLRRWDTRSVRLRQQKICDAYHLAHYFGYWRRYAGRAKRHEVWVERIQAWGAARPTMVRALASLCPSAQKQLAWQAWMAWYGLRIQAREVRKYGEVHRARGQGLMSVRRLRELVLTRKEKRAREEFNEGLAEHFRKAKGFCRLKDRLWEERRERRLIRRREMEARSERDRRECLEEAFGRWSVYTTTMQQAMAWFHS 1203
            S S  ++ L+ +L+QQLEEL  +VSAT                     E    AHD     A   P           + L L  S   S   S S S S     D    +     P  ++       T L+ HLS ++ LLL+SDF+LQQ++F +WKQK W+ + L RR+R AF  +K  A +    +  A  +  +  Q        +R+V+    +A    G RA L R AR+    + RRV+CR +G ++ +Q+Q  L+ T+ + W     C  H+ R+E + L +C   WQ     E   L+ALTI +RA++A SA+  EH RL+++A++A++LM V R+R S    WV GC  +R  R R     T F +T  +RG  AL  Y     E  ++   A    A+ L+ KTL  W   A  QA E+E   QEG  + ++RR+A AF+QLR  A+ +   K L  V  ++K +RRL  W +  +E   RR   +QH++ R  + +  +F RW  Y  L +A +RV  L+       VL+  H    I   A+ I   R  + Q +CLQWW   A H    RRL  AR LRRWRL +A+  LQR +E   G +A +RT  +R     L W   RR    ++                  L +W   ++ R H  CLE +A    QR  K   L+A  +   RR ++  +   A E  HR++R    +GL+ L R+R+S   LP  R+RA+  W L R W        R +  RQRQ +  +L+ GQWE RRL  ++ +L+    + R    ++Q   S+ + Q+ + W R   +   LR FQRR QE L+  +   W  W+++Q ++R A+++  +  R+  +FHAWR  I  RKEL +RA+ V  +V  G+L+RAW  GWR ++ +   E+ +E   LR RG                            L R +L  W  A R   R+  AV  M   R     RRW  R+ RL+ + + +   +A +  YW  +  R  RH  W+ ++Q W  ARPT + AL    PS    LAW+ W+ WYGLR+Q+R+++  G++H A+G+ L  VRRL+  V T++  R   +    L   F K + F RL++R+   R+ER  IRRRE+  +  RDRR CLE+   RW  YT TM+    W HS
Sbjct:    6 SPSRTSSELQHLLRQQLEELRWVVSATTV---DTLSTSAAHSALAPSTEKFRLAHDYHVLVAETPPLEEPSLTSPSSSTLRLSYSSRLSPPFSRSFSSSSSDEHDTTYAHRTTWTPRVSSTYLAPIATPLQTHLSKLKCLLLESDFHLQQQVFIVWKQKCWYVISLRRRLRGAFCRMK-AAGNRAASLHTADAYNKYCRQRHLISILKQRVVKSASCEASVARGIRAHLHRIARRAFAQMGRRVSCRRQGDIVVVQQQGRLVQTAFHAWRCLLTCGYHVRRRERRFLTKCLKEWQHVNLIEERCLQALTIKVRAQKAFSALTSEHRRLQNQASSAMHLMTVHRVRASFNH-WVHGCHLQRRHRSRIARGETHFRRTQWRRGQAALCAYFWRREEADRSQRRAEIFAAKQLSAKTLGTWRTFAQIQATEVEARVQEGATRNLQRRRARAFRQLRERARCQRQIKALMTVFTMKKGQRRLCYWHAWVQECGARRLRELQHEKDRVSAFLDGYFHRWTAYCRLQMARRRVLLLHTKSQLASVLKVLHHTFTIHTLARSIQHGREQELQDRCLQWWRGVAKHSTCLRRLRSARALRRWRLGMARLTLQRSLEKDTGNRAWQRTACQRMFGKWLLWVAARRTFHSQLGLVLVHRRRKSECRCRAMLHDWSTHARARRHRLCLESEADAGRQRNQKTAFLYALQRNQRRRRIEILSMGRANEISHRRKRTQGLKGLLWLHRIRVS---LPLLRQRAMNAWWLRRAWKVWTRNFLRSIQLRQRQRKNEILSAGQWEVRRLFSSLYRLQCFIKICRSFHTLRQRTVSRRLEQACQRWRRNALLVSKLRNFQRRCQERLVGRLFSVWRGWSSEQPLKREAVVQCMENTRKTRHFHAWRAVILHRKELTLRAKAVSDVVGLGILRRAWEEGWRKSFNEARLEKCAELFVLRSRGLKPWRRWSQNMQERQEKAKLTEALEEMRLLRYTLRTWQAARRFLLRDHNAVNAMSLWRLNAGWRRWRARAARLKNKTLAENRQMARHIAYWCTFLRRRIRHNAWLAQLQTWSVARPTFIEALVGNFPSGVLHLAWKKWLVWYGLRVQSRKMQGAGDMHVAKGKPLAFVRRLQLRVRTKQHVRDHTQVRNYLVSQFVKVRAFQRLQERIITARKERLAIRRRELGIQLARDRRHCLEQILWRWKAYTDTMRTTREWLHS 1199
The following BLAST results are available for this feature:
BLAST of NO01G04570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29351.11.800e-15533.36hypothetical protein Naga_100028g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007818NSK007818Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04570.1NO01G04570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577419gene_477Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100028g3gene1244Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04570.1NO01G04570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04570 ID=NO01G04570|Name=NO01G04570|organism=Nannochloropsis oceanica|type=gene|length=3789bp
ATGCCGACGATGCCTTATTCATCATCCACGGCCACCGCCCGCCTCGAGCG
GATGCTGCAGCAGCAGCTGGAAGAACTGCATACAATTGTTTCGGCCACCG
TCACAGCATCGTCGTCCTCCTTCTTATCAGCATCGTTTTCTTCGGCCGCA
CTCCTTCCAGTGGAAGACTTGGCGGCAGCACACGACGACGACGGTAGCCA
TGCCTCCCCTTCACCAGCAGCATTCCACAAAAACGATGAAGACGGACACG
CATGTTTGGCCTTGTGCTCTTCCCCACTGTCATCGTCAGTCACTTCCCCT
TCTATGTCTTTCTCCTCCTCGTCCACAAGCGATGACGAAGCCTTCTACCA
TCTGGCTTCCCTCCCCACCACCAATACCAACATCGGCACCACGGCCTTAG
AGGTTCACCTCTCGAGTATCCAACAATTGCTCCTTGACTCGGATTTTTAT
CTGCAACAACGTATTTTTAGCCTCTGGAAGCAAAAAAGTTGGCACGCCGT
CCGTCTTCACCGCCGGATACGTGTCGCTTTCGATCTCCTAAAGCAGCGAG
CCCTCCACACCAAACCACGCATGAGCATGGCAAAGAGACACGCGAATTTT
CTATCACAAGGCCTTTTTTTCGAAAAGGCCTGGCGTCGTCTCGTTCAAAT
CGACTACCGCAAGGCCCTGTCAATGCACGGACAACGAGCCACCCTTCAAC
GCCGCGCCCGGCAGTTCATCCACATGCTCACTCGTCGCGTGACATGCCGA
TGTAAAGGCCAGCTCATAACCCTACAGCGACAATTCCACCTTCTTCACAC
TTCTATCTATGTTTGGCACAATACCAAAAAGTGCCAGCAGCATCTCCTCC
GGCAGGAAAACAAGCTCTTGATCCGTTGTTTCCTCCGGTGGCAAGGCTTT
ATTTACACAGAAAGAGCATCCTTAGAAGCACTCACCATCAATTTACGAGC
CCGCAGAGCCATCTCCGCCATGGTTAAGGAACACAACCGACTCAAAAGCC
GGGCAAATGCTGCTTTAAACCTTATGGCGGTGCGGCGGATGCGAAGGAGT
TTGGGGCAATTGTGGGTGATGGGGTGTCGACGACGACGTACGATGCGCTT
AAGAGATGAATGGGCTTTTACAATCTTCTACCAGACGCTTGCAAAGCGGG
GGATGGGGGCGCTCCAGAGATATTTGCAAGCATGGAGGGAGGAAAGGCAG
GCATGGGGGTTGGCGATGGAGCTTGAAGCGAGGAATTTGGCGAGGAAAAC
GTTGAAGGGGTGGTTGCATGCGGCGGGGCGACAAGCAAGGGAGATGGAAG
AGCTTTCGCAAGAGGGCGGCGAGAAGAGGATGCGACGACGGCAAGCTGGA
GCATTTCAACAATTAAGGCTTTATGCCCAGCACCGGCATCTCGCCAAGAT
ACTGCATGGTGTTGTCTTGCTCAGAAAAGCAAGGCGGCGACTGGAAGAAT
GGAAGTCCTGTGCACGAGAACGAAGCAAGCGACGAGACCTAGTCATCCAG
CACCAGCAGCAACGATATCGGTCCCTGGTTCTCGACTTCTTCTTCCGCTG
GATACGGTACCATTTGCTCCACCTTGCTTCCCAGCGAGTCCACACTCTAA
ACTATTCCAAGCTCGCCCGCCAAGTGCTGCAAACCTTCCACCGCGCCCTA
CACATCTCCCGAAGCGCTCAAGTGATCGCATGTAGGCGTCGGGCAAAATC
ACAAAGACAGTGCCTCCAGTGGTGGACTGCAGCAGCAATGCACTTCCAAA
AACGTCGACGCCTCTACATGGCACGAGGCCTCCGTCGCTGGCGCCTGGCA
GTCGCTCAACAGCGACTGCAGCGTGGGATTGAGACAGGTCTAGGGGGAAA
GGCCAGGAGGCGTACCATAGGCCGACGGGGGCTTGCAGCATTGCTCAAGT
GGGCGGAGACTCGTCGCTTAGGCGAAAGGCGGATTATTGCTGCCAGCGAG
CAGAGGAGGCGGGCGGAGGAACGACGATGCCATACAGCCTTGAGGGAATG
GAGGGAGGGAAGTAAGGAAAGGTACCACTGGCAGTGTCTGGAGGAAGATG
CAGGGGATTGGGCGCAGCGGCGGGGAAAGGCAGTGGGTCTGTTCGCGTTC
ACAAAATGTCATGGAAGAAGGATGCTGGATGGGGACACACGGAAGATGGC
CGAGTACTTTCATCGGCAACGGCGACTACATCGGGGCCTGATGGTACTGC
AGCGGCTGCGCTTGTCGGCGGTGGTCCTTCCTGCTTTTCGTGAGCGTGCT
ATACGGAGGTGGTGCTTACACCGAGAGTGGGGAAGATTGGTGGTGGGTCA
TACGCGCTGTGTGGGAGATCGGCAGAGGCAGGAGCAGACAGCACTGCTGG
CAGAGGGGCAGTGGGAAACACGTCGACTCATTATTGCCGTGGGCCAGCTC
GAACGAGCTCGGATCTTGACTCGACGGGTGGAGGAGGTTCAACAACACAT
GCACTCTCAGTTGGTTCTTCAGTCTCTTCGTATGTGGACACGTGAAACTC
AAATAGCTCAAGGCCTTCGTCGATTTCAGCGTCGATCCCAGGAGTGGCTA
CTGGCTGGAGTAATGCGTGCGTGGGGGAGGTGGACCGCACAGCAGTCAGT
GCGTCGGGCGGCGTTGATAGAGTTGTCGCAGAAGGCACGCCGAGCCGAGT
ATTTTCATGCATGGCGGGGGTCGATTCACCGGAGGAAGGAGCTGCAGATG
CGGGCGAGGGAGGTGATGCAGTTGGTGGAGGAGGGGCTTCTACAGCGTGC
GTGGATGTTTGGGTGGAGGGTAGCGTATGAGGACGTTTGTCGGGAGCGAC
GCTCAGAGAGGCTGTTTTTGCGGTATCGGGGATGGGAGCCCTGGCGACGA
TGGATGCGAGAGAAGAAGAAGGAGATAAAGAGAGTGGAGACGGTGCAGTC
CTTAATGGCAACGCGTTTGTTTCGTCTCAGTTTGGAAGGATGGGGGGAGG
CATTTCGACTTGCAAGAAGGGAGGAGGAAGCAGTTCAGATTATGGTTGAA
AGGCGGGCAGTTCAAGTCTTGCGACGATGGGATACACGAAGTGTACGTTT
ACGGCAGCAGAAAATATGTGATGCGTATCATTTAGCCCATTACTTTGGCT
ACTGGCGTAGATATGCGGGACGAGCCAAGCGACACGAGGTGTGGGTAGAG
CGAATTCAGGCCTGGGGGGCAGCCAGACCGACGATGGTCCGAGCTTTGGC
CAGTCTTTGCCCATCGGCCCAAAAGCAGCTGGCATGGCAGGCGTGGATGG
CTTGGTATGGGCTACGGATTCAAGCCCGAGAAGTGAGGAAATATGGCGAA
GTCCACCGTGCGCGGGGACAGGGCTTGATGTCCGTTCGACGGTTGCGGGA
GCTGGTGCTGACGCGGAAGGAGAAGCGTGCCCGTGAGGAGTTTAATGAAG
GGCTTGCGGAGCATTTTAGGAAGGCCAAGGGGTTTTGTCGCCTGAAGGAT
CGGTTGTGGGAGGAAAGGAGGGAACGACGGTTGATCAGGAGACGAGAGAT
GGAGGCCCGGTCAGAGCGGGATAGGAGGGAATGTTTGGAGGAAGCGTTTG
GGCGATGGTCAGTGTATACAACCACGATGCAGCAGGCTATGGCGTGGTTT
CATTCTCTCCCGCGGGAAGGTGAGCGGGAGGATAAGGACGGTCGCATAAG
AAGGAGAAGAAGCATCAGCATCAGCAGCAGCAGCAGTGCGGACGGTGGTG
AGAGCGGTTGTGGGAAAGATGAGCATGGAGATATCTTACTGCCCGAGACG
GGAGATAGTTTCGACTGGACATCAAACGTCGTAGTGTAG
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protein sequence of NO01G04570.1

>NO01G04570.1-protein ID=NO01G04570.1-protein|Name=NO01G04570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1263bp
MPTMPYSSSTATARLERMLQQQLEELHTIVSATVTASSSSFLSASFSSAA
LLPVEDLAAAHDDDGSHASPSPAAFHKNDEDGHACLALCSSPLSSSVTSP
SMSFSSSSTSDDEAFYHLASLPTTNTNIGTTALEVHLSSIQQLLLDSDFY
LQQRIFSLWKQKSWHAVRLHRRIRVAFDLLKQRALHTKPRMSMAKRHANF
LSQGLFFEKAWRRLVQIDYRKALSMHGQRATLQRRARQFIHMLTRRVTCR
CKGQLITLQRQFHLLHTSIYVWHNTKKCQQHLLRQENKLLIRCFLRWQGF
IYTERASLEALTINLRARRAISAMVKEHNRLKSRANAALNLMAVRRMRRS
LGQLWVMGCRRRRTMRLRDEWAFTIFYQTLAKRGMGALQRYLQAWREERQ
AWGLAMELEARNLARKTLKGWLHAAGRQAREMEELSQEGGEKRMRRRQAG
AFQQLRLYAQHRHLAKILHGVVLLRKARRRLEEWKSCARERSKRRDLVIQ
HQQQRYRSLVLDFFFRWIRYHLLHLASQRVHTLNYSKLARQVLQTFHRAL
HISRSAQVIACRRRAKSQRQCLQWWTAAAMHFQKRRRLYMARGLRRWRLA
VAQQRLQRGIETGLGGKARRRTIGRRGLAALLKWAETRRLGERRIIAASE
QRRRAEERRCHTALREWREGSKERYHWQCLEEDAGDWAQRRGKAVGLFAF
TKCHGRRMLDGDTRKMAEYFHRQRRLHRGLMVLQRLRLSAVVLPAFRERA
IRRWCLHREWGRLVVGHTRCVGDRQRQEQTALLAEGQWETRRLIIAVGQL
ERARILTRRVEEVQQHMHSQLVLQSLRMWTRETQIAQGLRRFQRRSQEWL
LAGVMRAWGRWTAQQSVRRAALIELSQKARRAEYFHAWRGSIHRRKELQM
RAREVMQLVEEGLLQRAWMFGWRVAYEDVCRERRSERLFLRYRGWEPWRR
WMREKKKEIKRVETVQSLMATRLFRLSLEGWGEAFRLARREEEAVQIMVE
RRAVQVLRRWDTRSVRLRQQKICDAYHLAHYFGYWRRYAGRAKRHEVWVE
RIQAWGAARPTMVRALASLCPSAQKQLAWQAWMAWYGLRIQAREVRKYGE
VHRARGQGLMSVRRLRELVLTRKEKRAREEFNEGLAEHFRKAKGFCRLKD
RLWEERRERRLIRRREMEARSERDRRECLEEAFGRWSVYTTTMQQAMAWF
HSLPREGEREDKDGRIRRRRSISISSSSSADGGESGCGKDEHGDILLPET
GDSFDWTSNVVV*
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Synonyms
Publications