Naga_100028g3, gene1244 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	Naga_100028g3
Unique Name	gene1244
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002457.1:248361..252254 -

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100028g3
Gene biotype	protein_coding
Gbkey	Gene

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:248361..252254 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
PRJNA174770	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL091	ngnoL091	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G04570	NO01G04570	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna1290	rna1290-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna1290	rna1290	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna1290

>rna1290-protein ID=rna1290-protein|Name=rna1290|organism=Nannochloropsis gaditana|type=polypeptide|length=1235bp
MSHVTSPSRTSSELQHLLRQQLEELRWVVSATTVDTLSTSAAHSALAPST
EKFRLAHDYHVLVAETPPLEEPSLTSPSSSTLRLSYSSRLSPPFSRSFSS
SSSDEHDTTYAHRTTWTPRVSSTYLAPIATPLQTHLSKLKCLLLESDFHL
QQQVFIVWKQKCWYVISLRRRLRGAFCRMKAAGNRAASLHTADAYNKYCR
QRHLISILKQRVVKSASCEASVARGIRAHLHRIARRAFAQMGRRVSCRRQ
GDIVVVQQQGRLVQTAFHAWRCLLTCGYHVRRRERRFLTKCLKEWQHVNL
IEERCLQALTIKVRAQKAFSALTSEHRRLQNQASSAMHLMTVHRVRASFN
HWVHGCHLQRRHRSRIARGETHFRRTQWRRGQAALCAYFWRREEADRSQR
RAEIFAAKQLSAKTLGTWRTFAQIQATEVEARVQEGATRNLQRRRARAFR
QLRERARCQRQIKALMTVFTMKKGQRRLCYWHAWVQECGARRLRELQHEK
DRVSAFLDGYFHRWTAYCRLQMARRRVLLLHTKSQLASVLKVLHHTFTIH
TLARSIQHGREQELQDRCLQWWRGVAKHSTCLRRLRSARALRRWRLGMAR
LTLQRSLEKDTGNRAWQRTACQRMFGKWLLWVAARRTFHSQLGLVLVHRR
RKSECRCRAMLHDWSTHARARRHRLCLESEADAGRQRNQKTAFLYALQRN
QRRRRIEILSMGRANEISHRRKRTQGLKGLLWLHRIRVSLPLLRQRAMNA
WWLRRAWKVWTRNFLRSIQLRQRQRKNEILSAGQWEVRRLFSSLYRLQCF
IKICRSFHTLRQRTVSRRLEQACQRWRRNALLVSKLRNFQRRCQERLVGR
LFSVWRGWSSEQPLKREAVVQCMENTRKTRHFHAWRAVILHRKELTLRAK
AVSDVVGLGILRRAWEEGWRKSFNEARLEKCAELFVLRSRGLKPWRRWSQ
NMQERQEKAKLTEALEEMRLLRYTLRTWQAARRFLLRDHNAVNAMSLWRL
NAGWRRWRARAARLKNKTLAENRQMARHIAYWCTFLRRRIRHNAWLAQLQ
TWSVARPTFIEALVGNFPSGVLHLAWKKWLVWYGLRVQSRKMQGAGDMHV
AKGKPLAFVRRLQLRVRTKQHVRDHTQVRNYLVSQFVKVRAFQRLQERII
TARKERLAIRRRELGIQLARDRRHCLEQILWRWKAYTDTMRTTREWLHSG
KGCDRVIRDSDRGVTEWIKPIKTGQNNALGESCAL

Synonyms

Publications