NO01G04560, NO01G04560 (gene) Nannochloropsis oceanica

Overview
NameNO01G04560
Unique NameNO01G04560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1403
Alignment locationchr1:1204131..1205533 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1204131..1205533 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008805RIB43A
Homology
The following BLAST results are available for this feature:
BLAST of NO01G04560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007820NSK007820Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04560.1NO01G04560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658017gene_476Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04560.1NO01G04560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04560 ID=NO01G04560|Name=NO01G04560|organism=Nannochloropsis oceanica|type=gene|length=1403bp
ATGAACGAAAATGTGCCTGGCAATCTGACCGACCCTAAAATCACCATAAG
TACAATGATGCCCGAATCTGAGGCCCTGCAAGAGGAACACCTCGCGAAAG
AGACCGCTCGGCTTGCCGCCAGGGCGCGACGGGATCAAGGTCGCCTAGCA
CGCTTGCAAAATGCCAACCGCACGACGACCGTGGACGTGACGGCCCTGGA
ATTGCAAATTGAAGAAAAGCGCCGCCTCAAGGAGCTGGAATTGCTGGCAG
CAGCCCGGGAGGGAAAGCATGTGGCTGAGATGGTGCGACTGCGGGCGGCC
CAAGAAGCGCAAGCAATTGCTGCCCGTCAGGCATTGGCGCGCACTGTCAA
AGACGAGTGGGCATTGCAAGCTGCGGCATGCAAGGATAAGAACAAGAAGG
ACATAAACTTTACGGATTTGCCGGTTGCCAAATGTGGGCGTGGGGCTTTG
CAAAAGCTTGATGGCGAGGACGAGGGGTATAGCGCACGTAAGAAGCAACA
Ggtaaatgaagggagaaggcgaaggaaatacacaacaatcattctgtaag
catgaagctcaattctcttgtcttctaccttcttcaaccatccgaaagCA
TGCAGAGATGCGATCATGGACGCAAGCCCAGAGGCAAGAGCAGCAAGAGC
GTAAATCGGCAGAGGCCCGCACCCGCGCTCAAGAAGCTGCCCAGTTGCGC
CGCGTTTTGTCCCTGGCCGACCAGCAGGCAGAGGGTGAGGCAGCCCTTCG
AACGTTTTTGACACGGCAGGTTCAAATTGAAAATGCAGCACAGATAGAGC
GTCATTCTTTGGTAAAGATCCAGCAGCTGAGGCAGAGACAGGAGGAGGAG
CAGGCGCTCTTGGCGCGCATGGGAGTGGACCCGATGCTTTCGGAGGTGAA
TGATTGCGTAAACCACGAGACAGGGCGTATTGTCTCTGATCGCTTCCGTG
GATTTTCAAGTGCACAGCGGCACGCCTTGCTGGAGGAGAATAAAAAAGTT
TTGCAGGAGAAGGCGGCTCGGCAGCAGCAAGAGCAGGAGGATGCACGTGC
TTGGGTCAAGCAGCAGGCGCGGTGGAACGCGCTGATGGAGCAGCAGGAGG
AGGAGGAACGTCATGCCCGGGCAGCACTGCACCAAGAGACTTATGCGACG
CTTCAGCTGCAGAAGCAAGAGCACAAGGTGCGTGATGCCCGAAATAGGGC
GGACGCTTTTGGTCGGATTGAGGAAGGACAAGGATTGGTTAGCAAATTCG
GGACGTCGCTGGCGTGACGAAAAAGGTGAAAGAAAAGTGTCGGTGGATGC
GAGAGATGGGCAAATAACAGGTGTTGAAGGGTTTGGAGCGGCGGGAGAAT
AGAAGTATTGGGAAACTGAGAGAAAAAAATGCTTGAAGAAATATGAGAAC
GAC
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protein sequence of NO01G04560.1

>NO01G04560.1-protein ID=NO01G04560.1-protein|Name=NO01G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MNENVPGNLTDPKITISTMMPESEALQEEHLAKETARLAARARRDQGRLA
RLQNANRTTTVDVTALELQIEEKRRLKELELLAAAREGKHVAEMVRLRAA
QEAQAIAARQALARTVKDEWALQAAACKDKNKKDINFTDLPVAKCGRGAL
QKLDGEDEGYSARKKQQHAEMRSWTQAQRQEQQERKSAEARTRAQEAAQL
RRVLSLADQQAEGEAALRTFLTRQVQIENAAQIERHSLVKIQQLRQRQEE
EQALLARMGVDPMLSEVNDCVNHETGRIVSDRFRGFSSAQRHALLEENKK
VLQEKAARQQQEQEDARAWVKQQARWNALMEQQEEEERHARAALHQETYA
TLQLQKQEHKVRDARNRADAFGRIEEGQGLVSKFGTSLA*
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Synonyms
Publications