NO01G04560.1, NO01G04560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04560.1
Unique NameNO01G04560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1306
Alignment locationchr1:1204131..1205533 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1204131..1205533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04560.1 vs.
Match: XP_008619501.1 (hypothetical protein SDRG_15115 [Saprolegnia diclina VS20]; EQC27107.1 hypothetical protein SDRG_15115 [Saprolegnia diclina VS20])

HSP 1 Score: 85.9 bits (211), Expect = 3.000e-13
Identity = 103/366 (28.14%), Postives = 177/366 (48.36%), Query Frame = 0 
Query:   34 ETARLAARARRDQGRLARLQNAN-RTTTVDVTALELQIEEKRRLKELELLAAAREGKHVAEMVRLRAAQEAQAIAARQALARTVKDEWALQAAACKDKNKKDI-----NFTDLPVAKCGRGALQKLDGEDEGYSARKKQQHAEMRSWTQAQRQEQQERKSAE---ARTRAQEAAQLRRVLSLADQQAEGEAALRTFLTRQV-QIENAAQIERHSLVKIQQLRQRQEEEQALL--ARMGVDPMLSEVNDCVNHETGRIVSDRFRGFSSAQRHALLEENKKVLQEKAARQQQEQEDARAWVKQQARWNALMEQQEEEERHARAALHQETYATLQLQKQEHKVRDARNRADAFGRIEEGQGLVSKFGTS 388
            +  R  AR  RDQ R+ +L +   R    D+  ++ QI EK++L + +     ++ +   ++ R     EA+   A++  A  ++ +WA+Q+    ++ + DI     +F  + V  C   + QK DGED G   R + Q A+ R W Q Q QE+Q R  AE   AR  A   AQ+ ++   A+ + E E   + F  R+  +   A+Q   +S  + + L   Q E QA +  A +  +P+ ++ +      +GR+  D ++G S  Q  A++  N+ +L  K A++++E++      +QQ      M Q E E    R     E   TL+ Q  E K R+ R +  + G+IE  +G  + FGTS
Sbjct:    9 DVRRAEARRARDQERVKKLHDGRLRNIGADIVGVKNQIAEKQQLAQQQADEEEKQFQEQEDLRRYLIRVEAEETLAKRDEAAKLRRDWAMQSQTRNERREADIARSTKDFAAISVDGCNVSSAQKFDGEDRGRHERHRLQAAQNRDWAQLQMQERQARLQAECDDARAYADTMAQVSKLQDEAETEYEREKTKQAFEVRKFNEAMLASQRLNNSRARARTLDMDQSEIQATVSSALVSENPLQAKTD-----VSGRVRVDHWKGLSPEQAKAVVFSNEAILAAKQAKREKERDAELEESRQQDLLRRQMAQYEYEAEKKRVQQTLEVQQTLKRQADEAKERERRQKDLSQGKIE--KGFFNSFGTS 367
The following BLAST results are available for this feature:
BLAST of NO01G04560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008619501.13.000e-1328.14hypothetical protein SDRG_15115 [Saprolegnia dicli... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04560NO01G04560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04560.1NO01G04560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04560.1.cds1NO01G04560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04560.1.cds2NO01G04560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04560.1 ID=NO01G04560.1|Name=NO01G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1306bp
ATGAACGAAAATGTGCCTGGCAATCTGACCGACCCTAAAATCACCATAAG
TACAATGATGCCCGAATCTGAGGCCCTGCAAGAGGAACACCTCGCGAAAG
AGACCGCTCGGCTTGCCGCCAGGGCGCGACGGGATCAAGGTCGCCTAGCA
CGCTTGCAAAATGCCAACCGCACGACGACCGTGGACGTGACGGCCCTGGA
ATTGCAAATTGAAGAAAAGCGCCGCCTCAAGGAGCTGGAATTGCTGGCAG
CAGCCCGGGAGGGAAAGCATGTGGCTGAGATGGTGCGACTGCGGGCGGCC
CAAGAAGCGCAAGCAATTGCTGCCCGTCAGGCATTGGCGCGCACTGTCAA
AGACGAGTGGGCATTGCAAGCTGCGGCATGCAAGGATAAGAACAAGAAGG
ACATAAACTTTACGGATTTGCCGGTTGCCAAATGTGGGCGTGGGGCTTTG
CAAAAGCTTGATGGCGAGGACGAGGGGTATAGCGCACGTAAGAAGCAACA
GCATGCAGAGATGCGATCATGGACGCAAGCCCAGAGGCAAGAGCAGCAAG
AGCGTAAATCGGCAGAGGCCCGCACCCGCGCTCAAGAAGCTGCCCAGTTG
CGCCGCGTTTTGTCCCTGGCCGACCAGCAGGCAGAGGGTGAGGCAGCCCT
TCGAACGTTTTTGACACGGCAGGTTCAAATTGAAAATGCAGCACAGATAG
AGCGTCATTCTTTGGTAAAGATCCAGCAGCTGAGGCAGAGACAGGAGGAG
GAGCAGGCGCTCTTGGCGCGCATGGGAGTGGACCCGATGCTTTCGGAGGT
GAATGATTGCGTAAACCACGAGACAGGGCGTATTGTCTCTGATCGCTTCC
GTGGATTTTCAAGTGCACAGCGGCACGCCTTGCTGGAGGAGAATAAAAAA
GTTTTGCAGGAGAAGGCGGCTCGGCAGCAGCAAGAGCAGGAGGATGCACG
TGCTTGGGTCAAGCAGCAGGCGCGGTGGAACGCGCTGATGGAGCAGCAGG
AGGAGGAGGAACGTCATGCCCGGGCAGCACTGCACCAAGAGACTTATGCG
ACGCTTCAGCTGCAGAAGCAAGAGCACAAGGTGCGTGATGCCCGAAATAG
GGCGGACGCTTTTGGTCGGATTGAGGAAGGACAAGGATTGGTTAGCAAAT
TCGGGACGTCGCTGGCGTGACGAAAAAGGTGAAAGAAAAGTGTCGGTGGA
TGCGAGAGATGGGCAAATAACAGGTGTTGAAGGGTTTGGAGCGGCGGGAG
AATAGAAGTATTGGGAAACTGAGAGAAAAAAATGCTTGAAGAAATATGAG
AACGAC
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protein sequence of NO01G04560.1

>NO01G04560.1-protein ID=NO01G04560.1-protein|Name=NO01G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MNENVPGNLTDPKITISTMMPESEALQEEHLAKETARLAARARRDQGRLA
RLQNANRTTTVDVTALELQIEEKRRLKELELLAAAREGKHVAEMVRLRAA
QEAQAIAARQALARTVKDEWALQAAACKDKNKKDINFTDLPVAKCGRGAL
QKLDGEDEGYSARKKQQHAEMRSWTQAQRQEQQERKSAEARTRAQEAAQL
RRVLSLADQQAEGEAALRTFLTRQVQIENAAQIERHSLVKIQQLRQRQEE
EQALLARMGVDPMLSEVNDCVNHETGRIVSDRFRGFSSAQRHALLEENKK
VLQEKAARQQQEQEDARAWVKQQARWNALMEQQEEEERHARAALHQETYA
TLQLQKQEHKVRDARNRADAFGRIEEGQGLVSKFGTSLA*
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mRNA from alignment at chr1:1204131..1205533-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04560.1 ID=NO01G04560.1|Name=NO01G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1403bp|location=Sequence derived from alignment at chr1:1204131..1205533- (Nannochloropsis oceanica)
ATGAACGAAAATGTGCCTGGCAATCTGACCGACCCTAAAATCACCATAAG
TACAATGATGCCCGAATCTGAGGCCCTGCAAGAGGAACACCTCGCGAAAG
AGACCGCTCGGCTTGCCGCCAGGGCGCGACGGGATCAAGGTCGCCTAGCA
CGCTTGCAAAATGCCAACCGCACGACGACCGTGGACGTGACGGCCCTGGA
ATTGCAAATTGAAGAAAAGCGCCGCCTCAAGGAGCTGGAATTGCTGGCAG
CAGCCCGGGAGGGAAAGCATGTGGCTGAGATGGTGCGACTGCGGGCGGCC
CAAGAAGCGCAAGCAATTGCTGCCCGTCAGGCATTGGCGCGCACTGTCAA
AGACGAGTGGGCATTGCAAGCTGCGGCATGCAAGGATAAGAACAAGAAGG
ACATAAACTTTACGGATTTGCCGGTTGCCAAATGTGGGCGTGGGGCTTTG
CAAAAGCTTGATGGCGAGGACGAGGGGTATAGCGCACGTAAGAAGCAACA
GGTAAATGAAGGGAGAAGGCGAAGGAAATACACAACAATCATTCTGTAAG
CATGAAGCTCAATTCTCTTGTCTTCTACCTTCTTCAACCATCCGAAAGCA
TGCAGAGATGCGATCATGGACGCAAGCCCAGAGGCAAGAGCAGCAAGAGC
GTAAATCGGCAGAGGCCCGCACCCGCGCTCAAGAAGCTGCCCAGTTGCGC
CGCGTTTTGTCCCTGGCCGACCAGCAGGCAGAGGGTGAGGCAGCCCTTCG
AACGTTTTTGACACGGCAGGTTCAAATTGAAAATGCAGCACAGATAGAGC
GTCATTCTTTGGTAAAGATCCAGCAGCTGAGGCAGAGACAGGAGGAGGAG
CAGGCGCTCTTGGCGCGCATGGGAGTGGACCCGATGCTTTCGGAGGTGAA
TGATTGCGTAAACCACGAGACAGGGCGTATTGTCTCTGATCGCTTCCGTG
GATTTTCAAGTGCACAGCGGCACGCCTTGCTGGAGGAGAATAAAAAAGTT
TTGCAGGAGAAGGCGGCTCGGCAGCAGCAAGAGCAGGAGGATGCACGTGC
TTGGGTCAAGCAGCAGGCGCGGTGGAACGCGCTGATGGAGCAGCAGGAGG
AGGAGGAACGTCATGCCCGGGCAGCACTGCACCAAGAGACTTATGCGACG
CTTCAGCTGCAGAAGCAAGAGCACAAGGTGCGTGATGCCCGAAATAGGGC
GGACGCTTTTGGTCGGATTGAGGAAGGACAAGGATTGGTTAGCAAATTCG
GGACGTCGCTGGCGTGACGAAAAAGGTGAAAGAAAAGTGTCGGTGGATGC
GAGAGATGGGCAAATAACAGGTGTTGAAGGGTTTGGAGCGGCGGGAGAAT
AGAAGTATTGGGAAACTGAGAGAAAAAAATGCTTGAAGAAATATGAGAAC
GAC
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Coding sequence (CDS) from alignment at chr1:1204131..1205533-

>NO01G04560.1 ID=NO01G04560.1|Name=NO01G04560.1|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at chr1:1204131..1205533- (Nannochloropsis oceanica)
ATGAACGAAAATGTGCCTGGCAATCTGACCGACCCTAAAATCACCATAAG
TACAATGATGCCCGAATCTGAGGCCCTGCAAGAGGAACACCTCGCGAAAG
AGACCGCTCGGCTTGCCGCCAGGGCGCGACGGGATCAAGGTCGCCTAGCA
CGCTTGCAAAATGCCAACCGCACGACGACCGTGGACGTGACGGCCCTGGA
ATTGCAAATTGAAGAAAAGCGCCGCCTCAAGGAGCTGGAATTGCTGGCAG
CAGCCCGGGAGGGAAAGCATGTGGCTGAGATGGTGCGACTGCGGGCGGCC
CAAGAAGCGCAAGCAATTGCTGCCCGTCAGGCATTGGCGCGCACTGTCAA
AGACGAGTGGGCATTGCAAGCTGCGGCATGCAAGGATAAGAACAAGAAGG
ACATAAACTTTACGGATTTGCCGGTTGCCAAATGTGGGCGTGGGGCTTTG
CAAAAGCTTGATGGCGAGGACGAGGGGTATAGCGCACGTAAGAAGCAACA
GCATGCAGAGATGCGATCATGGACGCAAGCCCAGAGGCAAGAGCAGCAAG
AGCGTAAATCGGCAGAGGCCCGCACCCGCGCTCAAGAAGCTGCCCAGTTG
CGCCGCGTTTTGTCCCTGGCCGACCAGCAGGCAGAGGGTGAGGCAGCCCT
TCGAACGTTTTTGACACGGCAGGTTCAAATTGAAAATGCAGCACAGATAG
AGCGTCATTCTTTGGTAAAGATCCAGCAGCTGAGGCAGAGACAGGAGGAG
GAGCAGGCGCTCTTGGCGCGCATGGGAGTGGACCCGATGCTTTCGGAGGT
GAATGATTGCGTAAACCACGAGACAGGGCGTATTGTCTCTGATCGCTTCC
GTGGATTTTCAAGTGCACAGCGGCACGCCTTGCTGGAGGAGAATAAAAAA
GTTTTGCAGGAGAAGGCGGCTCGGCAGCAGCAAGAGCAGGAGGATGCACG
TGCTTGGGTCAAGCAGCAGGCGCGGTGGAACGCGCTGATGGAGCAGCAGG
AGGAGGAGGAACGTCATGCCCGGGCAGCACTGCACCAAGAGACTTATGCG
ACGCTTCAGCTGCAGAAGCAAGAGCACAAGGTGCGTGATGCCCGAAATAG
GGCGGACGCTTTTGGTCGGATTGAGGAAGGACAAGGATTGGTTAGCAAAT
TCGGGACGTCGCTGGCGTGA
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Synonyms
Publications