NO01G04380, NO01G04380 (gene) Nannochloropsis oceanica

Overview
NameNO01G04380
Unique NameNO01G04380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1198
Alignment locationchr1:1165175..1166372 -

Link to JBrowse

Properties
Property NameValue
DescriptionRedoxin domain protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1165175..1166372 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0042221response to chemical
GO:0019725cellular homeostasis
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR013766Thioredoxin_domain
IPR037944PRX5-like
IPR013740Redoxin
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: XP_005854233.1 (redoxin domain protein [Nannochloropsis gaditana CCMP526] >EKU22124.1 redoxin domain protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 249.2 bits (635), Expect = 9.400e-63
Identity = 119/173 (68.79%), Postives = 141/173 (81.50%), Query Frame = 0 
Query:    3 PPRQGDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            P + GD FPNVDLWVL PA SDNKPR+PV+V+   + KGKRRV+ VGIPGPFTPGCS+SHVPGF+E A  L+AKGID IYV+STAD +VMDAFA +LG   Q QP  I FLADGN +LT ALD+++DG++RGMG RMQRFAMVV+G G+++D  VD SG IKFSRA NVLSRL
Sbjct:    2 PSQVGDLFPNVDLWVLEPAHSDNKPRQPVSVRSWQLVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 174
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: EWM29355.1 (redoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 248.8 bits (634), Expect = 1.200e-62
Identity = 119/173 (68.79%), Postives = 141/173 (81.50%), Query Frame = 0 
Query:    3 PPRQGDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            P + GD FPNVDLWVL PA SDNKPR+PV+V   ++ KGKRRV+ VGIPGPFTPGCS+SHVPGF+E A  L+AKGID IYV+STAD +VMDAFA +LG   Q QP  I FLADGN +LT ALD+++DG++RGMG RMQRFAMVV+G G+++D  VD SG IKFSRA NVLSRL
Sbjct:   60 PSQVGDLFPNVDLWVLEPAHSDNKPRQPVSVHSWELVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 232
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_018624645.1 (peroxiredoxin [Kangiella aquimarina])

HSP 1 Score: 125.9 bits (315), Expect = 1.200e-25
Identity = 73/169 (43.20%), Postives = 105/169 (62.13%), Query Frame = 0 
Query:    7 GDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            GDT PNV L V+     ++ P++   +   DIF GK +VV+  +PG FTP CS +H+PGF+  A D+++KG+D I  +S  DV+VMDA+  +      +    I+ LADGN   T A+ ++MD T  GMG R +RFAM+VD  G+V+  +VD  G  K S A N+LS+L
Sbjct:    5 GDTLPNVTLKVM----GEDGPKD---ITTDDIFAGK-KVVLFAVPGAFTPTCSAAHLPGFVVNADDIKSKGVDTIACMSVNDVFVMDAWGKA------QNADEIMMLADGNADFTEAMGIEMDATGFGMGVRSKRFAMIVD-DGVVKALEVDEKGFEK-SSAENILSKL 157
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_078706987.1 (peroxiredoxin [Aurantimonas sp. USBA 369] >SJZ71345.1 Peroxiredoxin [Aurantimonas sp. USBA 369])

HSP 1 Score: 124.4 bits (311), Expect = 3.500e-25
Identity = 70/170 (41.18%), Postives = 104/170 (61.18%), Query Frame = 0 
Query:    7 GDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQV-DISGQIKFSRAANVLSRL 176
            GD+ PN    V       +  + P  +   D+FKGK +VV+ G+PG FTPGC+ +H+PG+L+   ++RAKG+D I VV+  DVYVM+A+       A +    I+FLADGN   T A+ L+ D T  GMG R +R++M+V+  G+V+  +V D  GQI+ S A ++L  L
Sbjct:    6 GDSLPNASFRV-------HSDKGPAYLSTDDVFKGK-KVVLFGVPGAFTPGCTMNHLPGYLDLNAEIRAKGVDTIAVVAVNDVYVMNAWEK-----ATQAADKILFLADGNADFTKAVGLEADMTPGGMGTRSKRYSMIVE-DGVVRALEVEDSPGQIEASSAGHMLELL 161
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_015780599.1 (peroxiredoxin [Kangiella koreensis] >ACV26993.1 Redoxin domain protein [Kangiella koreensis DSM 16069])

HSP 1 Score: 123.6 bits (309), Expect = 6.000e-25
Identity = 72/169 (42.60%), Postives = 100/169 (59.17%), Query Frame = 0 
Query:    7 GDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            GD  PNV L V+           P  +   DIF GK +VV+  +PG FTP CS +H+PGF+  A D+++KG+D I  +S  DV+VMDA+  +      +    I+ LADGN   T A+ ++MD T  GMG R +RFAM+VD  G+V+  +VD  G  K S A N+LS+L
Sbjct:    5 GDALPNVTLKVMG-------KDGPQDISTDDIFSGK-KVVLFAVPGAFTPTCSAAHLPGFVVQADDIKSKGVDTIACMSVNDVFVMDAWGKA------QNADEIMMLADGNADFTEAMGIEMDATGFGMGVRSKRFAMIVD-DGVVKALEVDEKGFEK-SSAENILSKL 157
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_106646919.1 (peroxiredoxin [Kangiella profundi] >AUD79087.1 peroxiredoxin [Kangiella profundi])

HSP 1 Score: 123.6 bits (309), Expect = 6.000e-25
Identity = 72/169 (42.60%), Postives = 101/169 (59.76%), Query Frame = 0 
Query:    7 GDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            GDT PNV L V+           P  +   DIF GK +VV+  +PG FTP CS +H+PGF+  A ++++KG+D I  +S  DV+VMDA+  +      +    I+ LADGN   T A+ ++MD T  GMG R +RFAM+VD  G+V+  +VD  G  K S A N+LS+L
Sbjct:    5 GDTLPNVTLKVMG-------KDGPTDITTDDIFAGK-KVVLFAVPGAFTPTCSAAHLPGFVVNADEIKSKGVDTIACMSVNDVFVMDAWGKA------QNADEIMMLADGNADFTEAMGIEMDATGFGMGVRSKRFAMIVD-DGVVKALEVDEKGFEK-SSAENILSKL 157
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_036258412.1 (peroxiredoxin [Methylocapsa aurea])

HSP 1 Score: 123.2 bits (308), Expect = 7.800e-25
Identity = 71/170 (41.76%), Postives = 104/170 (61.18%), Query Frame = 0 
Query:    7 GDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQV-DISGQIKFSRAANVLSRL 176
            GD+ P     V++P     +  +       +IFKG RRVV+ G+PG FTP CS SH+PGF + A +L++KGID+I V S  DV+VMDA+A +    A+     I FLADGN    NAL L +D T RG+G R QR++M+V+  G+V+   V +  G+ + S A  +L+++
Sbjct:    6 GDSLPKATFTVMTPDGPKLRTTD-------EIFKG-RRVVLFGVPGAFTPTCSASHLPGFRDKADELKSKGIDEIAVASVNDVFVMDAWAKAANAEAK-----ISFLADGNGDFANALGLSLDLTERGLGVRSQRYSMLVE-DGVVRTLNVEEAPGKAEISSAEALLTQI 161
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_031552410.1 (peroxiredoxin [Parvularcula oceani])

HSP 1 Score: 122.9 bits (307), Expect = 1.000e-24
Identity = 75/171 (43.86%), Postives = 96/171 (56.14%), Query Frame = 0 
Query:    5 RQGDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            +QGD  P      L  AT+D     P  V+  ++F GK +  +  +PG FTP CS  H+PGF+E A DLRAKGIDQI  VS  D +VM A+    G         I+ LADGN   T AL L MDG S GMG R QR+AMVV+    V+   V+  G  + S A ++LS+L
Sbjct:    3 KQGDKLPEK---TLMKATADG----PEPVETAELFGGK-KTALFAVPGAFTPTCSARHLPGFIEKADDLRAKGIDQIVCVSVNDAFVMRAWGEQSG-----ATDDIVMLADGNGEFTEALGLVMDGASFGMGKRSQRYAMVVE-DNTVKRLDVEEGGAFEVSSAEHMLSQL 159
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_090194752.1 (peroxiredoxin [Erythrobacter sp. HL-111] >KPP90289.1 Peroxiredoxin [Erythrobacteraceae bacterium HL-111] >SDR84553.1 Peroxiredoxin [Erythrobacter sp. HL-111])

HSP 1 Score: 122.9 bits (307), Expect = 1.000e-24
Identity = 75/169 (44.38%), Postives = 95/169 (56.21%), Query Frame = 0 
Query:    7 GDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            GD  P+V    L  AT+D     P  V+  D F GK RV +  +PG FTP CS  H+PGF+E A DLRAKGID+I   +  D +VM A+  S G         I  LADGN     AL L MDG+  GMG R QRF+MVV+  G+V+   V+  G  K S A ++L +L
Sbjct:    6 GDKLPDV---TLVKATADG----PQQVQAADYFAGK-RVALFSVPGAFTPTCSAKHLPGFVEKASDLRAKGIDEICGTAVNDAFVMQAWNQSAG------SENITMLADGNGDFVEALGLTMDGSGFGMGKRGQRFSMVVN-DGVVEQLNVEAPGDFKVSSAEHMLGQL 159
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_008945893.1 (peroxiredoxin [Oceanibaculum indicum] >EKE69404.1 redoxin domain-containing protein [Oceanibaculum indicum P24])

HSP 1 Score: 122.5 bits (306), Expect = 1.300e-24
Identity = 72/169 (42.60%), Postives = 101/169 (59.76%), Query Frame = 0 
Query:    7 GDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            GD  P+V L V    T+D        V   D FKGK +VV+  +PG FTP CS  HVPGF+E A DL+ KG+D I  +S  D +VMDA+A       Q+    ++ LADG+ + T A+ L++D T+RGMG R QR+AM+VD  G V   +V+  G  + S A ++L++L
Sbjct:    6 GDKIPSVTLQV---KTADGINE----VSTDDFFKGK-KVVLFALPGAFTPTCSAKHVPGFVEKAADLKGKGVDTIACLSVNDAFVMDAWAKD-----QKSDGKVVMLADGSAAFTKAVGLELDLTARGMGVRSQRYAMIVD-DGKVTRLEVEEPGAFQVSSAESILAKL 160
The following BLAST results are available for this feature:
BLAST of NO01G04380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854233.19.400e-6368.79redoxin domain protein [Nannochloropsis gaditana C... [more]
EWM29355.11.200e-6268.79redoxin domain protein [Nannochloropsis gaditana][more]
WP_018624645.11.200e-2543.20peroxiredoxin [Kangiella aquimarina][more]
WP_078706987.13.500e-2541.18peroxiredoxin [Aurantimonas sp. USBA 369] >SJZ7134... [more]
WP_015780599.16.000e-2542.60peroxiredoxin [Kangiella koreensis] >ACV26993.1 Re... [more]
WP_106646919.16.000e-2542.60peroxiredoxin [Kangiella profundi] >AUD79087.1 per... [more]
WP_036258412.17.800e-2541.76peroxiredoxin [Methylocapsa aurea][more]
WP_031552410.11.000e-2443.86peroxiredoxin [Parvularcula oceani][more]
WP_090194752.11.000e-2444.38peroxiredoxin [Erythrobacter sp. HL-111] >KPP90289... [more]
WP_008945893.11.300e-2442.60peroxiredoxin [Oceanibaculum indicum] >EKE69404.1 ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007841NSK007841Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04380.1NO01G04380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577366gene_455Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100028g24gene1260Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04380.1NO01G04380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04380 ID=NO01G04380|Name=NO01G04380|organism=Nannochloropsis oceanica|type=gene|length=1198bp
TTGATGTTTTGATGGAATAGACGCGGGAGATACTACTTGTCCAGTACTGC
CAAACGTGCGTTGTGCGGGTGCAGGGAACCACCGTACGTCGGGGCACTTA
ATCGTGACTGGAAAAAAATGAACGATTTAAATCGTCAGGCAGACTCGGAG
CGCAGCACAAAGGGGATGGCCTTGTCAACTGATTGTGTAAGGAGTCCCGA
TGCTGGCGGCGATCTCTGCCTCCCATGCGCCGCTCGTATTGCATGCCGAA
GTCTTAGTACCAATCACACTCGCTTCCTCATCCCTTGACTCCGTCATGTA
AAACACGCGGATTTCCTCCAATTGACGCCGCAACCCCGCCATCATATAGG
CCGGCATGCCTCCACCCCGCCAGGGCGACACATTTCCCAACGTGGACCTC
TGGGTTCTGTCTCCTGCCACATCTGACAACAAGCCCCGAGAACCTGTAGC
TGTCAAGCCCTTGGACATTTTTAAGGGCAAGCGGCGCGTGGTGGTGGTGG
GCATCCCGGGACCGgtgcgtagctgaattctttgaccggtgtattgcaga
atcggggagggggagactggcctgcgggctttggagggcaatcgatacct
tgcccgagccatcctgttaaccttttctgttacaatggtatatttcaaac
ccttacagTTTACCCCCGGCTGCTCCAGGAGCCACGTGCCAGGCTTCCTT
GAAGCTGCCAAAGACCTGCGCGCAAAAGGGATAGATCAAATTTACGTTGT
CAGCACCGCCGACGgtaggagacacaaaaatattggaagtactgcatgtc
aggataatgtacatcatgagagctcataattttatctgtctcttgtatca
tccaccaagTATATGTGATGGATGCCTTTGCCAGCTCGCTAGGACCGCTC
GCACAAGAGCAACCTCCTCCCATCATCTTCCTTGCCGACGGCAATCAATC
TCTCACCAACGCCTTGGACCTGAAAATGGATGGCACAAGTCGAGGAATGG
GCCCGCGGATGCAGCGGTTTGCGATGGTAGTGGATGGGAAAGGTATCGTT
CAAGACTTCCAAGTCGATATAAGCGGCCAGATCAAATTTTCGCGGGCGGC
GAATGTGTTGAGTCGCTTGTAGGAAAGTAGAAAGATGCTGGAGTCAAATG
AAAGTGTACGAATAGAATAGAATAATAATTGGACAAGGGAAAAAATGC
back to top

protein sequence of NO01G04380.1

>NO01G04380.1-protein ID=NO01G04380.1-protein|Name=NO01G04380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MPPPRQGDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGI
PGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLG
PLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKG
IVQDFQVDISGQIKFSRAANVLSRL*
back to top
Synonyms
Publications