NO01G04380, NO01G04380 (gene) Nannochloropsis oceanica

Overview
NameNO01G04380
Unique NameNO01G04380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1198
Alignment locationchr1:1165175..1166372 -

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Properties
Property NameValue
DescriptionRedoxin domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1165175..1166372 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0042221response to chemical
GO:0019725cellular homeostasis
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR013766Thioredoxin_domain
IPR037944PRX5-like
IPR013740Redoxin
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: XP_005854233.1 (redoxin domain protein [Nannochloropsis gaditana CCMP526] >EKU22124.1 redoxin domain protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 249.2 bits (635), Expect = 9.400e-63
Identity = 119/173 (68.79%), Postives = 141/173 (81.50%), Query Frame = 0 
Query:    3 PPRQGDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            P + GD FPNVDLWVL PA SDNKPR+PV+V+   + KGKRRV+ VGIPGPFTPGCS+SHVPGF+E A  L+AKGID IYV+STAD +VMDAFA +LG   Q QP  I FLADGN +LT ALD+++DG++RGMG RMQRFAMVV+G G+++D  VD SG IKFSRA NVLSRL
Sbjct:    2 PSQVGDLFPNVDLWVLEPAHSDNKPRQPVSVRSWQLVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 174
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: EWM29355.1 (redoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 248.8 bits (634), Expect = 1.200e-62
Identity = 119/173 (68.79%), Postives = 141/173 (81.50%), Query Frame = 0 
Query:    3 PPRQGDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            P + GD FPNVDLWVL PA SDNKPR+PV+V   ++ KGKRRV+ VGIPGPFTPGCS+SHVPGF+E A  L+AKGID IYV+STAD +VMDAFA +LG   Q QP  I FLADGN +LT ALD+++DG++RGMG RMQRFAMVV+G G+++D  VD SG IKFSRA NVLSRL
Sbjct:   60 PSQVGDLFPNVDLWVLEPAHSDNKPRQPVSVHSWELVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 232
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_018624645.1 (peroxiredoxin [Kangiella aquimarina])

HSP 1 Score: 125.9 bits (315), Expect = 1.200e-25
Identity = 73/169 (43.20%), Postives = 105/169 (62.13%), Query Frame = 0 
Query:    7 GDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            GDT PNV L V+     ++ P++   +   DIF GK +VV+  +PG FTP CS +H+PGF+  A D+++KG+D I  +S  DV+VMDA+  +      +    I+ LADGN   T A+ ++MD T  GMG R +RFAM+VD  G+V+  +VD  G  K S A N+LS+L
Sbjct:    5 GDTLPNVTLKVM----GEDGPKD---ITTDDIFAGK-KVVLFAVPGAFTPTCSAAHLPGFVVNADDIKSKGVDTIACMSVNDVFVMDAWGKA------QNADEIMMLADGNADFTEAMGIEMDATGFGMGVRSKRFAMIVD-DGVVKALEVDEKGFEK-SSAENILSKL 157
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_078706987.1 (peroxiredoxin [Aurantimonas sp. USBA 369] >SJZ71345.1 Peroxiredoxin [Aurantimonas sp. USBA 369])

HSP 1 Score: 124.4 bits (311), Expect = 3.500e-25
Identity = 70/170 (41.18%), Postives = 104/170 (61.18%), Query Frame = 0 
Query:    7 GDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQV-DISGQIKFSRAANVLSRL 176
            GD+ PN    V       +  + P  +   D+FKGK +VV+ G+PG FTPGC+ +H+PG+L+   ++RAKG+D I VV+  DVYVM+A+       A +    I+FLADGN   T A+ L+ D T  GMG R +R++M+V+  G+V+  +V D  GQI+ S A ++L  L
Sbjct:    6 GDSLPNASFRV-------HSDKGPAYLSTDDVFKGK-KVVLFGVPGAFTPGCTMNHLPGYLDLNAEIRAKGVDTIAVVAVNDVYVMNAWEK-----ATQAADKILFLADGNADFTKAVGLEADMTPGGMGTRSKRYSMIVE-DGVVRALEVEDSPGQIEASSAGHMLELL 161
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_015780599.1 (peroxiredoxin [Kangiella koreensis] >ACV26993.1 Redoxin domain protein [Kangiella koreensis DSM 16069])

HSP 1 Score: 123.6 bits (309), Expect = 6.000e-25
Identity = 72/169 (42.60%), Postives = 100/169 (59.17%), Query Frame = 0 
Query:    7 GDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            GD  PNV L V+           P  +   DIF GK +VV+  +PG FTP CS +H+PGF+  A D+++KG+D I  +S  DV+VMDA+  +      +    I+ LADGN   T A+ ++MD T  GMG R +RFAM+VD  G+V+  +VD  G  K S A N+LS+L
Sbjct:    5 GDALPNVTLKVMG-------KDGPQDISTDDIFSGK-KVVLFAVPGAFTPTCSAAHLPGFVVQADDIKSKGVDTIACMSVNDVFVMDAWGKA------QNADEIMMLADGNADFTEAMGIEMDATGFGMGVRSKRFAMIVD-DGVVKALEVDEKGFEK-SSAENILSKL 157
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_106646919.1 (peroxiredoxin [Kangiella profundi] >AUD79087.1 peroxiredoxin [Kangiella profundi])

HSP 1 Score: 123.6 bits (309), Expect = 6.000e-25
Identity = 72/169 (42.60%), Postives = 101/169 (59.76%), Query Frame = 0 
Query:    7 GDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            GDT PNV L V+           P  +   DIF GK +VV+  +PG FTP CS +H+PGF+  A ++++KG+D I  +S  DV+VMDA+  +      +    I+ LADGN   T A+ ++MD T  GMG R +RFAM+VD  G+V+  +VD  G  K S A N+LS+L
Sbjct:    5 GDTLPNVTLKVMG-------KDGPTDITTDDIFAGK-KVVLFAVPGAFTPTCSAAHLPGFVVNADEIKSKGVDTIACMSVNDVFVMDAWGKA------QNADEIMMLADGNADFTEAMGIEMDATGFGMGVRSKRFAMIVD-DGVVKALEVDEKGFEK-SSAENILSKL 157
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_036258412.1 (peroxiredoxin [Methylocapsa aurea])

HSP 1 Score: 123.2 bits (308), Expect = 7.800e-25
Identity = 71/170 (41.76%), Postives = 104/170 (61.18%), Query Frame = 0 
Query:    7 GDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQV-DISGQIKFSRAANVLSRL 176
            GD+ P     V++P     +  +       +IFKG RRVV+ G+PG FTP CS SH+PGF + A +L++KGID+I V S  DV+VMDA+A +    A+     I FLADGN    NAL L +D T RG+G R QR++M+V+  G+V+   V +  G+ + S A  +L+++
Sbjct:    6 GDSLPKATFTVMTPDGPKLRTTD-------EIFKG-RRVVLFGVPGAFTPTCSASHLPGFRDKADELKSKGIDEIAVASVNDVFVMDAWAKAANAEAK-----ISFLADGNGDFANALGLSLDLTERGLGVRSQRYSMLVE-DGVVRTLNVEEAPGKAEISSAEALLTQI 161
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_031552410.1 (peroxiredoxin [Parvularcula oceani])

HSP 1 Score: 122.9 bits (307), Expect = 1.000e-24
Identity = 75/171 (43.86%), Postives = 96/171 (56.14%), Query Frame = 0 
Query:    5 RQGDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            +QGD  P      L  AT+D     P  V+  ++F GK +  +  +PG FTP CS  H+PGF+E A DLRAKGIDQI  VS  D +VM A+    G         I+ LADGN   T AL L MDG S GMG R QR+AMVV+    V+   V+  G  + S A ++LS+L
Sbjct:    3 KQGDKLPEK---TLMKATADG----PEPVETAELFGGK-KTALFAVPGAFTPTCSARHLPGFIEKADDLRAKGIDQIVCVSVNDAFVMRAWGEQSG-----ATDDIVMLADGNGEFTEALGLVMDGASFGMGKRSQRYAMVVE-DNTVKRLDVEEGGAFEVSSAEHMLSQL 159
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_090194752.1 (peroxiredoxin [Erythrobacter sp. HL-111] >KPP90289.1 Peroxiredoxin [Erythrobacteraceae bacterium HL-111] >SDR84553.1 Peroxiredoxin [Erythrobacter sp. HL-111])

HSP 1 Score: 122.9 bits (307), Expect = 1.000e-24
Identity = 75/169 (44.38%), Postives = 95/169 (56.21%), Query Frame = 0 
Query:    7 GDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            GD  P+V    L  AT+D     P  V+  D F GK RV +  +PG FTP CS  H+PGF+E A DLRAKGID+I   +  D +VM A+  S G         I  LADGN     AL L MDG+  GMG R QRF+MVV+  G+V+   V+  G  K S A ++L +L
Sbjct:    6 GDKLPDV---TLVKATADG----PQQVQAADYFAGK-RVALFSVPGAFTPTCSAKHLPGFVEKASDLRAKGIDEICGTAVNDAFVMQAWNQSAG------SENITMLADGNGDFVEALGLTMDGSGFGMGKRGQRFSMVVN-DGVVEQLNVEAPGDFKVSSAEHMLGQL 159
[Close]
BLAST of NO01G04380 vs. NCBI_GenBank
Match: WP_008945893.1 (peroxiredoxin [Oceanibaculum indicum] >EKE69404.1 redoxin domain-containing protein [Oceanibaculum indicum P24])

HSP 1 Score: 122.5 bits (306), Expect = 1.300e-24
Identity = 72/169 (42.60%), Postives = 101/169 (59.76%), Query Frame = 0 
Query:    7 GDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            GD  P+V L V    T+D        V   D FKGK +VV+  +PG FTP CS  HVPGF+E A DL+ KG+D I  +S  D +VMDA+A       Q+    ++ LADG+ + T A+ L++D T+RGMG R QR+AM+VD  G V   +V+  G  + S A ++L++L
Sbjct:    6 GDKIPSVTLQV---KTADGINE----VSTDDFFKGK-KVVLFALPGAFTPTCSAKHVPGFVEKAADLKGKGVDTIACLSVNDAFVMDAWAKD-----QKSDGKVVMLADGSAAFTKAVGLELDLTARGMGVRSQRYAMIVD-DGKVTRLEVEEPGAFQVSSAESILAKL 160
The following BLAST results are available for this feature:
BLAST of NO01G04380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854233.19.400e-6368.79redoxin domain protein [Nannochloropsis gaditana C... [more]
EWM29355.11.200e-6268.79redoxin domain protein [Nannochloropsis gaditana][more]
WP_018624645.11.200e-2543.20peroxiredoxin [Kangiella aquimarina][more]
WP_078706987.13.500e-2541.18peroxiredoxin [Aurantimonas sp. USBA 369] >SJZ7134... [more]
WP_015780599.16.000e-2542.60peroxiredoxin [Kangiella koreensis] >ACV26993.1 Re... [more]
WP_106646919.16.000e-2542.60peroxiredoxin [Kangiella profundi] >AUD79087.1 per... [more]
WP_036258412.17.800e-2541.76peroxiredoxin [Methylocapsa aurea][more]
WP_031552410.11.000e-2443.86peroxiredoxin [Parvularcula oceani][more]
WP_090194752.11.000e-2444.38peroxiredoxin [Erythrobacter sp. HL-111] >KPP90289... [more]
WP_008945893.11.300e-2442.60peroxiredoxin [Oceanibaculum indicum] >EKE69404.1 ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007841NSK007841Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04380.1NO01G04380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577366gene_455Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100028g24gene1260Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04380.1NO01G04380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04380 ID=NO01G04380|Name=NO01G04380|organism=Nannochloropsis oceanica|type=gene|length=1198bp
TTGATGTTTTGATGGAATAGACGCGGGAGATACTACTTGTCCAGTACTGC
CAAACGTGCGTTGTGCGGGTGCAGGGAACCACCGTACGTCGGGGCACTTA
ATCGTGACTGGAAAAAAATGAACGATTTAAATCGTCAGGCAGACTCGGAG
CGCAGCACAAAGGGGATGGCCTTGTCAACTGATTGTGTAAGGAGTCCCGA
TGCTGGCGGCGATCTCTGCCTCCCATGCGCCGCTCGTATTGCATGCCGAA
GTCTTAGTACCAATCACACTCGCTTCCTCATCCCTTGACTCCGTCATGTA
AAACACGCGGATTTCCTCCAATTGACGCCGCAACCCCGCCATCATATAGG
CCGGCATGCCTCCACCCCGCCAGGGCGACACATTTCCCAACGTGGACCTC
TGGGTTCTGTCTCCTGCCACATCTGACAACAAGCCCCGAGAACCTGTAGC
TGTCAAGCCCTTGGACATTTTTAAGGGCAAGCGGCGCGTGGTGGTGGTGG
GCATCCCGGGACCGgtgcgtagctgaattctttgaccggtgtattgcaga
atcggggagggggagactggcctgcgggctttggagggcaatcgatacct
tgcccgagccatcctgttaaccttttctgttacaatggtatatttcaaac
ccttacagTTTACCCCCGGCTGCTCCAGGAGCCACGTGCCAGGCTTCCTT
GAAGCTGCCAAAGACCTGCGCGCAAAAGGGATAGATCAAATTTACGTTGT
CAGCACCGCCGACGgtaggagacacaaaaatattggaagtactgcatgtc
aggataatgtacatcatgagagctcataattttatctgtctcttgtatca
tccaccaagTATATGTGATGGATGCCTTTGCCAGCTCGCTAGGACCGCTC
GCACAAGAGCAACCTCCTCCCATCATCTTCCTTGCCGACGGCAATCAATC
TCTCACCAACGCCTTGGACCTGAAAATGGATGGCACAAGTCGAGGAATGG
GCCCGCGGATGCAGCGGTTTGCGATGGTAGTGGATGGGAAAGGTATCGTT
CAAGACTTCCAAGTCGATATAAGCGGCCAGATCAAATTTTCGCGGGCGGC
GAATGTGTTGAGTCGCTTGTAGGAAAGTAGAAAGATGCTGGAGTCAAATG
AAAGTGTACGAATAGAATAGAATAATAATTGGACAAGGGAAAAAATGC
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protein sequence of NO01G04380.1

>NO01G04380.1-protein ID=NO01G04380.1-protein|Name=NO01G04380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MPPPRQGDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGI
PGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLG
PLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKG
IVQDFQVDISGQIKFSRAANVLSRL*
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Synonyms
Publications