NO01G04380.1, NO01G04380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04380.1
Unique NameNO01G04380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length959
Alignment locationchr1:1165175..1166372 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1165175..1166372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04380.1 vs.
Match: XP_005854233.1 (redoxin domain protein [Nannochloropsis gaditana CCMP526]; EKU22124.1 redoxin domain protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 249.2 bits (635), Expect = 9.400e-63
Identity = 119/173 (68.79%), Postives = 141/173 (81.50%), Query Frame = 0 
Query:    3 PPRQGDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGIPGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLGPLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKGIVQDFQVDISGQIKFSRAANVLSRL 176
            P + GD FPNVDLWVL PA SDNKPR+PV+V+   + KGKRRV+ VGIPGPFTPGCS+SHVPGF+E A  L+AKGID IYV+STAD +VMDAFA +LG   Q QP  I FLADGN +LT ALD+++DG++RGMG RMQRFAMVV+G G+++D  VD SG IKFSRA NVLSRL
Sbjct:    2 PSQVGDLFPNVDLWVLEPAHSDNKPRQPVSVRSWQLVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 174
The following BLAST results are available for this feature:
BLAST of NO01G04380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854233.19.400e-6368.79redoxin domain protein [Nannochloropsis gaditana C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04380NO01G04380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04380.1NO01G04380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04380.1.cds1NO01G04380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04380.1.cds2NO01G04380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04380.1.cds3NO01G04380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04380.1 ID=NO01G04380.1|Name=NO01G04380.1|organism=Nannochloropsis oceanica|type=mRNA|length=959bp
TTGATGTTTTGATGGAATAGACGCGGGAGATACTACTTGTCCAGTACTGC
CAAACGTGCGTTGTGCGGGTGCAGGGAACCACCGTACGTCGGGGCACTTA
ATCGTGACTGGAAAAAAATGAACGATTTAAATCGTCAGGCAGACTCGGAG
CGCAGCACAAAGGGGATGGCCTTGTCAACTGATTGTGTAAGGAGTCCCGA
TGCTGGCGGCGATCTCTGCCTCCCATGCGCCGCTCGTATTGCATGCCGAA
GTCTTAGTACCAATCACACTCGCTTCCTCATCCCTTGACTCCGTCATGTA
AAACACGCGGATTTCCTCCAATTGACGCCGCAACCCCGCCATCATATAGG
CCGGCATGCCTCCACCCCGCCAGGGCGACACATTTCCCAACGTGGACCTC
TGGGTTCTGTCTCCTGCCACATCTGACAACAAGCCCCGAGAACCTGTAGC
TGTCAAGCCCTTGGACATTTTTAAGGGCAAGCGGCGCGTGGTGGTGGTGG
GCATCCCGGGACCGTTTACCCCCGGCTGCTCCAGGAGCCACGTGCCAGGC
TTCCTTGAAGCTGCCAAAGACCTGCGCGCAAAAGGGATAGATCAAATTTA
CGTTGTCAGCACCGCCGACGTATATGTGATGGATGCCTTTGCCAGCTCGC
TAGGACCGCTCGCACAAGAGCAACCTCCTCCCATCATCTTCCTTGCCGAC
GGCAATCAATCTCTCACCAACGCCTTGGACCTGAAAATGGATGGCACAAG
TCGAGGAATGGGCCCGCGGATGCAGCGGTTTGCGATGGTAGTGGATGGGA
AAGGTATCGTTCAAGACTTCCAAGTCGATATAAGCGGCCAGATCAAATTT
TCGCGGGCGGCGAATGTGTTGAGTCGCTTGTAGGAAAGTAGAAAGATGCT
GGAGTCAAATGAAAGTGTACGAATAGAATAGAATAATAATTGGACAAGGG
AAAAAATGC
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protein sequence of NO01G04380.1

>NO01G04380.1-protein ID=NO01G04380.1-protein|Name=NO01G04380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MPPPRQGDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGI
PGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLG
PLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKG
IVQDFQVDISGQIKFSRAANVLSRL*
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mRNA from alignment at chr1:1165175..1166372-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04380.1 ID=NO01G04380.1|Name=NO01G04380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1198bp|location=Sequence derived from alignment at chr1:1165175..1166372- (Nannochloropsis oceanica)
TTGATGTTTTGATGGAATAGACGCGGGAGATACTACTTGTCCAGTACTGC
CAAACGTGCGTTGTGCGGGTGCAGGGAACCACCGTACGTCGGGGCACTTA
ATCGTGACTGGAAAAAAATGAACGATTTAAATCGTCAGGCAGACTCGGAG
CGCAGCACAAAGGGGATGGCCTTGTCAACTGATTGTGTAAGGAGTCCCGA
TGCTGGCGGCGATCTCTGCCTCCCATGCGCCGCTCGTATTGCATGCCGAA
GTCTTAGTACCAATCACACTCGCTTCCTCATCCCTTGACTCCGTCATGTA
AAACACGCGGATTTCCTCCAATTGACGCCGCAACCCCGCCATCATATAGG
CCGGCATGCCTCCACCCCGCCAGGGCGACACATTTCCCAACGTGGACCTC
TGGGTTCTGTCTCCTGCCACATCTGACAACAAGCCCCGAGAACCTGTAGC
TGTCAAGCCCTTGGACATTTTTAAGGGCAAGCGGCGCGTGGTGGTGGTGG
GCATCCCGGGACCGGTGCGTAGCTGAATTCTTTGACCGGTGTATTGCAGA
ATCGGGGAGGGGGAGACTGGCCTGCGGGCTTTGGAGGGCAATCGATACCT
TGCCCGAGCCATCCTGTTAACCTTTTCTGTTACAATGGTATATTTCAAAC
CCTTACAGTTTACCCCCGGCTGCTCCAGGAGCCACGTGCCAGGCTTCCTT
GAAGCTGCCAAAGACCTGCGCGCAAAAGGGATAGATCAAATTTACGTTGT
CAGCACCGCCGACGGTAGGAGACACAAAAATATTGGAAGTACTGCATGTC
AGGATAATGTACATCATGAGAGCTCATAATTTTATCTGTCTCTTGTATCA
TCCACCAAGTATATGTGATGGATGCCTTTGCCAGCTCGCTAGGACCGCTC
GCACAAGAGCAACCTCCTCCCATCATCTTCCTTGCCGACGGCAATCAATC
TCTCACCAACGCCTTGGACCTGAAAATGGATGGCACAAGTCGAGGAATGG
GCCCGCGGATGCAGCGGTTTGCGATGGTAGTGGATGGGAAAGGTATCGTT
CAAGACTTCCAAGTCGATATAAGCGGCCAGATCAAATTTTCGCGGGCGGC
GAATGTGTTGAGTCGCTTGTAGGAAAGTAGAAAGATGCTGGAGTCAAATG
AAAGTGTACGAATAGAATAGAATAATAATTGGACAAGGGAAAAAATGC
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Coding sequence (CDS) from alignment at chr1:1165175..1166372-

>NO01G04380.1 ID=NO01G04380.1|Name=NO01G04380.1|organism=Nannochloropsis oceanica|type=CDS|length=528bp|location=Sequence derived from alignment at chr1:1165175..1166372- (Nannochloropsis oceanica)
ATGCCTCCACCCCGCCAGGGCGACACATTTCCCAACGTGGACCTCTGGGT
TCTGTCTCCTGCCACATCTGACAACAAGCCCCGAGAACCTGTAGCTGTCA
AGCCCTTGGACATTTTTAAGGGCAAGCGGCGCGTGGTGGTGGTGGGCATC
CCGGGACCGTTTACCCCCGGCTGCTCCAGGAGCCACGTGCCAGGCTTCCT
TGAAGCTGCCAAAGACCTGCGCGCAAAAGGGATAGATCAAATTTACGTTG
TCAGCACCGCCGACGTATATGTGATGGATGCCTTTGCCAGCTCGCTAGGA
CCGCTCGCACAAGAGCAACCTCCTCCCATCATCTTCCTTGCCGACGGCAA
TCAATCTCTCACCAACGCCTTGGACCTGAAAATGGATGGCACAAGTCGAG
GAATGGGCCCGCGGATGCAGCGGTTTGCGATGGTAGTGGATGGGAAAGGT
ATCGTTCAAGACTTCCAAGTCGATATAAGCGGCCAGATCAAATTTTCGCG
GGCGGCGAATGTGTTGAGTCGCTTGTAG
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Synonyms
Publications