NO01G04370, NO01G04370 (gene) Nannochloropsis oceanica

Overview
NameNO01G04370
Unique NameNO01G04370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length980
Alignment locationchr1:1164130..1165109 -

Link to JBrowse

Properties
Property NameValue
DescriptionDna repair protein rad14
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1164130..1165109 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
GO:0003684damaged DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006289nucleotide-excision repair
Vocabulary: INTERPRO
TermDefinition
IPR009061DNA-bd_dom_put
IPR000465XPA
IPR022656XPA_C
Homology
[Close]
BLAST of NO01G04370 vs. NCBI_GenBank
Match: CEP06893.1 (hypothetical protein [Parasitella parasitica])

HSP 1 Score: 84.3 bits (207), Expect = 5.600e-13
Identity = 46/148 (31.08%), Postives = 78/148 (52.70%), Query Frame = 0 
Query:   76 AQGGFTTDGYEDDGG-NKTQSTRTIPVASLSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERRK 220
            ++GGF  D   D+   +K++S +   +      PP L   D   C+ C +  +DP F  VF I +C  CK    D+Y L+TK +A  ++LL +  ++   ++P   + NP  + +  M LY R+ +   A+++W G  GL+ E ERR+
Sbjct:   67 SKGGFIVDETNDEKKFDKSKSDKCYAIEPYF--PPSLEASDNPKCKECSSVDLDPVFFNVFHIYLCPTCKEKFPDKYSLITKTEAKEDYLLTDPELKDPELLPHWSKPNPHKSTWNDMMLYVREMVEEYAFKKWNGPEGLDAEYERRE 212
[Close]
BLAST of NO01G04370 vs. NCBI_GenBank
Match: XP_019028938.1 (DNA repair protein [Tsuchiyaea wingfieldii CBS 7118] >ODN87378.1 DNA repair protein [Tsuchiyaea wingfieldii CBS 7118])

HSP 1 Score: 84.3 bits (207), Expect = 5.600e-13
Identity = 51/166 (30.72%), Postives = 86/166 (51.81%), Query Frame = 0 
Query:   76 AQGGFTTDGYEDDGGNKTQSTRTIPVAS-------LSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERR---KKRRYENALE 229
            ++GGF T+  ED  G++ +S + +              + P +       C  CG+  +D  F++ FG+ VC  C+    ++Y L+TK +   ++LL +  +R   ++P L R NP  + Y+ M L+ R Q+   AY++W G  GL++E ERR   KKR+ E   E
Sbjct:  100 SRGGFLTE--EDVTGDRIKSLKELAAEKERELRQIREGEEPAIVPGRSPKCADCGSLEIDHVFEKTFGVRVCRKCQKEKPEKYSLLTKTECKEDYLLTDPELRDEDLIPHLLRPNPYASNYSNMMLFMRAQVEKVAYDKWGGDEGLDKEWERREEFKKRKREEKFE 263
[Close]
BLAST of NO01G04370 vs. NCBI_GenBank
Match: CBJ26398.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.0 bits (206), Expect = 7.300e-13
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = 0 
Query:  127 VDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIRVMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERRKKRRYENALEKMVNIF 235
            +D    E FGI VC  CK + E+   + TK D    +LL +GTI V+ F+ER NP ++ +TKMKLY R+++ A +Y+RW    GL  E  RR+  +Y+ +L +   IF
Sbjct:    1 MDKELLEAFGISVCRTCKMSREEFQYVSTK-DVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVVAYSYKRWGSEDGLAAERRRRESLKYDRSLARTKGIF 107
[Close]
BLAST of NO01G04370 vs. NCBI_GenBank
Match: SAM00385.1 (hypothetical protein [Absidia glauca])

HSP 1 Score: 84.0 bits (206), Expect = 7.300e-13
Identity = 47/148 (31.76%), Postives = 79/148 (53.38%), Query Frame = 0 
Query:   77 QGGFTTDGYEDDGGN--KTQSTRTIPVASLSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERRK 220
            +GGF  D   ++  N  + Q+T+  P+   S+ P          C+ C +  VD  F +VF I VC+ CK    D+Y L+TK +A  ++LL +  ++   ++P   + NPR + +  M LY R+ +   A+++W G  GL+ E ERR+
Sbjct:   67 KGGFIVDPVTEEKVNRFREQATKIEPMLLYSLDP-----ATAPKCKECDSTNVDTVFYQVFNICVCADCKEKYPDKYSLITKTEAREDYLLTDPELKDKDLLPHWSKPNPRKSTWNNMMLYVREMVEDYAFQKWGGPEGLDAEYERRE 209
[Close]
BLAST of NO01G04370 vs. NCBI_GenBank
Match: PIK61145.1 (putative DNA repair protein [Apostichopus japonicus])

HSP 1 Score: 84.0 bits (206), Expect = 7.300e-13
Identity = 63/223 (28.25%), Postives = 104/223 (46.64%), Query Frame = 0 
Query:   26 SPQVSMLTDEQKARIEENRRRALALXXXXXXXXXXXXXXXXXXXXLHELLAQGGFTTDG--YEDDGGNKTQSTRTIPVASLSV--QPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTI----RVMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERRKKRRYENALEKMVNIFDTQKKK 241
            S + S L+D Q+ARIE NR+RAL +                      + + +G     G   + + G   Q    +    L++  +P  L G   + C  CGN   D +  + F   VC  C+ + E+++ L+TK +A  E+LL++  +      + FL R NP N ++  MKLY R Q+  +A E W+     +EE++  K+RR EN  +  +   D   K+
Sbjct:   14 SSEASPLSDRQRARIERNRQRALMVRHSKHAYQPYTKKKPEKK---EDKIPEGAIRLPGGLLDTNSGFLIQEDEVVEEKELNIVQEPGPLLGAGLLRCLECGNDFQDSSLYKQFDHSVCDDCR-DSEEKHTLITKTEAKHEYLLKDADLDKREPTLKFLVRKNPHNPRWGDMKLYLRLQIEKRALEVWES----QEEIDAAKERRTENREKAKMKKLDKSVKE 228
[Close]
BLAST of NO01G04370 vs. NCBI_GenBank
Match: XP_021872138.1 (XPA protein C-terminus-domain-containing protein [Kockovaella imperatae] >ORX38216.1 XPA protein C-terminus-domain-containing protein [Kockovaella imperatae])

HSP 1 Score: 83.6 bits (205), Expect = 9.500e-13
Identity = 48/153 (31.37%), Postives = 80/153 (52.29%), Query Frame = 0 
Query:   76 AQGGFTTDGYEDDGGNKT-----QSTRTIPVASLSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERRKK 221
            ++GGF T+   DDG  K+     +         +  + P +       C  C +  +D  FQ+VF I VC  CK    ++Y L+TK +   ++LL +  +R   ++P L R NP  + Y+ M L+ R+Q+   A+++W G  GL++E ERR+K
Sbjct:  108 SRGGFLTEDDADDGRIKSVIEMAREKERQRQMIMEGEEPAIFADTSPRCRECRSLEIDNQFQKVFSINVCKSCKEKFPEKYSLLTKTECKEDYLLTDPELRDEDLLPHLLRPNPYASTYSNMMLFMREQVEKVAWDKWGGEEGLDKEWERREK 260
[Close]
BLAST of NO01G04370 vs. NCBI_GenBank
Match: CDH54519.1 (dna repair protein rad14 [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 83.2 bits (204), Expect = 1.200e-12
Identity = 47/154 (30.52%), Postives = 79/154 (51.30%), Query Frame = 0 
Query:   77 QGGFTTDGYEDD---GGNKTQSTRTIPVASLSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERRKKRRYE 225
            +GGF  +   +D      + ++T+  P   +S  P      +   C  CG+  VDP F +VF + VC  CK    + Y L+TK +A  ++LL +  +R   ++P   + NPR   +  M LY R+ +   A+++W G  GL+ E ERR+ ++ E
Sbjct:   86 KGGFMIEETREDKLIKSRREEATKISPFIPMSSDP-----SENPKCRDCGSQDVDPIFFQVFHMSVCPRCKEKYPERYSLITKTEAKEDYLLTDPELRDTELLPHWSKPNPRKATWNNMMLYVREMVEEYAFKKWGGEEGLDAEYERREAQKKE 234
[Close]
BLAST of NO01G04370 vs. NCBI_GenBank
Match: ORY32144.1 (XPA protein C-terminus-domain-containing protein [Naematelia encephala])

HSP 1 Score: 83.2 bits (204), Expect = 1.200e-12
Identity = 53/166 (31.93%), Postives = 86/166 (51.81%), Query Frame = 0 
Query:   76 AQGGFTTDGYEDDGGNKT------QSTRTIPVASLSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERR---KKRRYENALEK 230
            ++GGF T+  +DDG  K+      +  R I +     +P  L       C  CG   ++  F +VF   VC  CK    ++Y L+TK +   ++LL +  ++   ++P L R NP  + Y+ M L+ R+Q+   A+E+W G  GL++E ERR   KKR+ E   E+
Sbjct:  102 SRGGFLTEDDKDDGRIKSVVEMAREKERQIKMMREGEEPAILV-DSSPRCRECGTLEIEHQFLKVFNTTVCKSCKVKFPEKYSLLTKTECKEDYLLTDPELKDEDLLPHLLRPNPYASTYSNMMLFLREQVEKVAWEKWGGEEGLDKEWERREQFKKRKREEKFEQ 266
[Close]
BLAST of NO01G04370 vs. NCBI_GenBank
Match: KZT61365.1 (DNA repair protein [Calocera cornea HHB12733])

HSP 1 Score: 82.8 bits (203), Expect = 1.600e-12
Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 0 
Query:  119 CEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERR----KKRRYENALEKM 231
            CE CG   +D  F +V+G+ VC+ CK    ++Y L+TK +   ++LL +  +R    MP L ++NP +  Y  M L+ RKQ+   A+++W G  GL+ E ERR    K +R +   EK+
Sbjct:  176 CEQCGTIDIDHQFNKVYGVCVCAQCKDKFPEQYSLLTKTECKTDYLLTDSELRDEQAMPHLLKANPHSATYNNMMLFLRKQVETFAWQKWGGPDGLDAEWERRELGKKSKRGKKFEEKL 294
[Close]
BLAST of NO01G04370 vs. NCBI_GenBank
Match: XP_009541430.1 (hypothetical protein HETIRDRAFT_307602 [Heterobasidion irregulare TC 32-1] >ETW87538.1 hypothetical protein HETIRDRAFT_307602 [Heterobasidion irregulare TC 32-1])

HSP 1 Score: 82.4 bits (202), Expect = 2.100e-12
Identity = 43/137 (31.39%), Postives = 80/137 (58.39%), Query Frame = 0 
Query:  105 SVQPP-KLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERR-------KKRRYENALEKM 231
            +V+PP  L       C+ C +  +D T++++F  LVC+ CKSN +++YGL+TK +   ++LL +  +R    +P L ++NP  + +  M L+CR Q+   A+++W     L++E ERR       K +++E  L+++
Sbjct:  134 NVEPPISLDPSRNPKCKECSSIDIDQTYRKMFRCLVCNQCKSNMQEKYGLLTKTECKEDYLLTDSELRDAEELPHLLKANPHKSTFANMMLFCRFQVEEFAWKKWGSPEALDDEWERRAVEAKKKKNKKFEQGLKEL 270
The following BLAST results are available for this feature:
BLAST of NO01G04370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CEP06893.15.600e-1331.08hypothetical protein [Parasitella parasitica][more]
XP_019028938.15.600e-1330.72DNA repair protein [Tsuchiyaea wingfieldii CBS 711... [more]
CBJ26398.17.300e-1340.74conserved unknown protein [Ectocarpus siliculosus][more]
SAM00385.17.300e-1331.76hypothetical protein [Absidia glauca][more]
PIK61145.17.300e-1328.25putative DNA repair protein [Apostichopus japonicu... [more]
XP_021872138.19.500e-1331.37XPA protein C-terminus-domain-containing protein [... [more]
CDH54519.11.200e-1230.52dna repair protein rad14 [Lichtheimia corymbifera ... [more]
ORY32144.11.200e-1231.93XPA protein C-terminus-domain-containing protein [... [more]
KZT61365.11.600e-1236.13DNA repair protein [Calocera cornea HHB12733][more]
XP_009541430.12.100e-1231.39hypothetical protein HETIRDRAFT_307602 [Heterobasi... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007843NSK007843Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04370.1NO01G04370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577364gene_454Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100028g25gene1261Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04370.1NO01G04370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04370 ID=NO01G04370|Name=NO01G04370|organism=Nannochloropsis oceanica|type=gene|length=980bp
GTTTTTGGGGTGATGCGCGACCGATCACGCTCTCGTGACCACCGTATAGA
AGTTATTTGATTTTCAATACGGTTACTATTTTTTCTTGCACCAGCATTTT
TTCCGATGTGACCAGCGCTTCCTTTTCCTGGGTGGCACAAGAAGTCGCTC
GCTGATATCATGATTCTGCGTTATGTGCCTGTGTTATCCCAGATCACACA
GCGAAGACCACTCACCGCATGCATTATGGCCCACTCACCTCAGGTATCCA
TGCTGACAGATGAGCAAAAGGCCAGGATCGAGGAAAACAGGAGGCGGGCC
TTGGCGTTGCGAGCTCAGAAGCTCCAGGAGCAGCAGCATAGAGAGCAGCA
GCAGAAGGAGGGCGGGGCCCTCCACGAGCTGCTCGCCCAAGGAGGCTTTA
CCACGGACGGCTACGAAGACGACGGTGGGAATAAAACCCAAAGCACGAGA
ACTATCCCAGTAGCGTCACTTTCCGTCCAGCCACCCAAGCTGGCGGGGAA
GGATGGTATGTCGTGCGAGGTGTGCGGGAACGGGCTCGTGGACCCCACTT
TTCAAGAAGTCTTTGGCATCCTAGTATGCTCACCATGCAAGAGCAACGAT
GAGGATGAATATGGGCTTATGACAAAGGGAGATGCAGTTGCCGAATTTCT
GTTGCAAGAAGGGACGATCCGCGTCATGCCCTTTCTAGAGCGAAGTAACC
CCCGCAATACGAAGTATACCAAGATGAAGCTATATTGCCGAAAACAATTG
CGGGCAAAGGCGTACGAGCGATGGAAGGGCCGGAGCGGGTTGGAGGAGGA
GGTTGAACGGCGGAAGAAGCGGAGATATGAGAATGCCCTGGAAAAAATGG
TGAATATATTCGATACTCAAAAGAAGAAATGGACCCCGCCATGAGGAGGG
TGAGGAAGAGAAAGACGTAGGACTTGGGTACATGAGTGGGGGGAGAGTAA
ACGTAATCAAGAGAGGGATATGCAATGTAC
back to top

protein sequence of NO01G04370.1

>NO01G04370.1-protein ID=NO01G04370.1-protein|Name=NO01G04370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MILRYVPVLSQITQRRPLTACIMAHSPQVSMLTDEQKARIEENRRRALAL
RAQKLQEQQHREQQQKEGGALHELLAQGGFTTDGYEDDGGNKTQSTRTIP
VASLSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDE
YGLMTKGDAVAEFLLQEGTIRVMPFLERSNPRNTKYTKMKLYCRKQLRAK
AYERWKGRSGLEEEVERRKKRRYENALEKMVNIFDTQKKKWTPP*
back to top
Synonyms
Publications