NO01G04370.1, NO01G04370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04370.1
Unique NameNO01G04370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length980
Alignment locationchr1:1164130..1165109 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1164130..1165109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G04370.1 vs.
Match: EWM29360.1 (dna repair protein rad14 [Nannochloropsis gaditana])

HSP 1 Score: 248.1 bits (632), Expect = 2.900e-62
Identity = 140/230 (60.87%), Postives = 171/230 (74.35%), Query Frame = 0 
Query:   31 MLTDEQKARIEENRRRALALRAQKLQE--QQH----REQQ-----------QKEGGALHELLAQGGFTTDGYEDDGGNKTQSTRTIPVASLSVQPPK---LAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIRVMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERRKKRRYENALEKMVNIFDTQKKK 241
            MLTDEQ+ARIEENR+RALALRA+K +E  QQH    REQQ           +    AL  LLAQGGFT +G ED+G     ST ++P A+ S   PK   + GK G+SCEVCG+GLVDP + +VF I VC+PCK+N+E+EYGL+TKGDAVAEFLLQEGT+RVMP+LER+NPRNTKY KMKLYCR+ LRAKAYERW G  GL EE  RR++RRYE+A++K +N+F    KK
Sbjct:    1 MLTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDEG----DSTDSVPTAAPSAPVPKATQVEGK-GLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMRVMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRRRERRYESAIDKTLNVFAKTTKK 225
The following BLAST results are available for this feature:
BLAST of NO01G04370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29360.12.900e-6260.87dna repair protein rad14 [Nannochloropsis gaditana... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04370NO01G04370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04370.1NO01G04370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04370.1.cds1NO01G04370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04370.1 ID=NO01G04370.1|Name=NO01G04370.1|organism=Nannochloropsis oceanica|type=mRNA|length=980bp
GTTTTTGGGGTGATGCGCGACCGATCACGCTCTCGTGACCACCGTATAGA
AGTTATTTGATTTTCAATACGGTTACTATTTTTTCTTGCACCAGCATTTT
TTCCGATGTGACCAGCGCTTCCTTTTCCTGGGTGGCACAAGAAGTCGCTC
GCTGATATCATGATTCTGCGTTATGTGCCTGTGTTATCCCAGATCACACA
GCGAAGACCACTCACCGCATGCATTATGGCCCACTCACCTCAGGTATCCA
TGCTGACAGATGAGCAAAAGGCCAGGATCGAGGAAAACAGGAGGCGGGCC
TTGGCGTTGCGAGCTCAGAAGCTCCAGGAGCAGCAGCATAGAGAGCAGCA
GCAGAAGGAGGGCGGGGCCCTCCACGAGCTGCTCGCCCAAGGAGGCTTTA
CCACGGACGGCTACGAAGACGACGGTGGGAATAAAACCCAAAGCACGAGA
ACTATCCCAGTAGCGTCACTTTCCGTCCAGCCACCCAAGCTGGCGGGGAA
GGATGGTATGTCGTGCGAGGTGTGCGGGAACGGGCTCGTGGACCCCACTT
TTCAAGAAGTCTTTGGCATCCTAGTATGCTCACCATGCAAGAGCAACGAT
GAGGATGAATATGGGCTTATGACAAAGGGAGATGCAGTTGCCGAATTTCT
GTTGCAAGAAGGGACGATCCGCGTCATGCCCTTTCTAGAGCGAAGTAACC
CCCGCAATACGAAGTATACCAAGATGAAGCTATATTGCCGAAAACAATTG
CGGGCAAAGGCGTACGAGCGATGGAAGGGCCGGAGCGGGTTGGAGGAGGA
GGTTGAACGGCGGAAGAAGCGGAGATATGAGAATGCCCTGGAAAAAATGG
TGAATATATTCGATACTCAAAAGAAGAAATGGACCCCGCCATGAGGAGGG
TGAGGAAGAGAAAGACGTAGGACTTGGGTACATGAGTGGGGGGAGAGTAA
ACGTAATCAAGAGAGGGATATGCAATGTAC
back to top

protein sequence of NO01G04370.1

>NO01G04370.1-protein ID=NO01G04370.1-protein|Name=NO01G04370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MILRYVPVLSQITQRRPLTACIMAHSPQVSMLTDEQKARIEENRRRALAL
RAQKLQEQQHREQQQKEGGALHELLAQGGFTTDGYEDDGGNKTQSTRTIP
VASLSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDE
YGLMTKGDAVAEFLLQEGTIRVMPFLERSNPRNTKYTKMKLYCRKQLRAK
AYERWKGRSGLEEEVERRKKRRYENALEKMVNIFDTQKKKWTPP*
back to top

mRNA from alignment at chr1:1164130..1165109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04370.1 ID=NO01G04370.1|Name=NO01G04370.1|organism=Nannochloropsis oceanica|type=mRNA|length=980bp|location=Sequence derived from alignment at chr1:1164130..1165109- (Nannochloropsis oceanica)
GTTTTTGGGGTGATGCGCGACCGATCACGCTCTCGTGACCACCGTATAGA
AGTTATTTGATTTTCAATACGGTTACTATTTTTTCTTGCACCAGCATTTT
TTCCGATGTGACCAGCGCTTCCTTTTCCTGGGTGGCACAAGAAGTCGCTC
GCTGATATCATGATTCTGCGTTATGTGCCTGTGTTATCCCAGATCACACA
GCGAAGACCACTCACCGCATGCATTATGGCCCACTCACCTCAGGTATCCA
TGCTGACAGATGAGCAAAAGGCCAGGATCGAGGAAAACAGGAGGCGGGCC
TTGGCGTTGCGAGCTCAGAAGCTCCAGGAGCAGCAGCATAGAGAGCAGCA
GCAGAAGGAGGGCGGGGCCCTCCACGAGCTGCTCGCCCAAGGAGGCTTTA
CCACGGACGGCTACGAAGACGACGGTGGGAATAAAACCCAAAGCACGAGA
ACTATCCCAGTAGCGTCACTTTCCGTCCAGCCACCCAAGCTGGCGGGGAA
GGATGGTATGTCGTGCGAGGTGTGCGGGAACGGGCTCGTGGACCCCACTT
TTCAAGAAGTCTTTGGCATCCTAGTATGCTCACCATGCAAGAGCAACGAT
GAGGATGAATATGGGCTTATGACAAAGGGAGATGCAGTTGCCGAATTTCT
GTTGCAAGAAGGGACGATCCGCGTCATGCCCTTTCTAGAGCGAAGTAACC
CCCGCAATACGAAGTATACCAAGATGAAGCTATATTGCCGAAAACAATTG
CGGGCAAAGGCGTACGAGCGATGGAAGGGCCGGAGCGGGTTGGAGGAGGA
GGTTGAACGGCGGAAGAAGCGGAGATATGAGAATGCCCTGGAAAAAATGG
TGAATATATTCGATACTCAAAAGAAGAAATGGACCCCGCCATGAGGAGGG
TGAGGAAGAGAAAGACGTAGGACTTGGGTACATGAGTGGGGGGAGAGTAA
ACGTAATCAAGAGAGGGATATGCAATGTAC
back to top

Coding sequence (CDS) from alignment at chr1:1164130..1165109-

>NO01G04370.1 ID=NO01G04370.1|Name=NO01G04370.1|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr1:1164130..1165109- (Nannochloropsis oceanica)
ATGATTCTGCGTTATGTGCCTGTGTTATCCCAGATCACACAGCGAAGACC
ACTCACCGCATGCATTATGGCCCACTCACCTCAGGTATCCATGCTGACAG
ATGAGCAAAAGGCCAGGATCGAGGAAAACAGGAGGCGGGCCTTGGCGTTG
CGAGCTCAGAAGCTCCAGGAGCAGCAGCATAGAGAGCAGCAGCAGAAGGA
GGGCGGGGCCCTCCACGAGCTGCTCGCCCAAGGAGGCTTTACCACGGACG
GCTACGAAGACGACGGTGGGAATAAAACCCAAAGCACGAGAACTATCCCA
GTAGCGTCACTTTCCGTCCAGCCACCCAAGCTGGCGGGGAAGGATGGTAT
GTCGTGCGAGGTGTGCGGGAACGGGCTCGTGGACCCCACTTTTCAAGAAG
TCTTTGGCATCCTAGTATGCTCACCATGCAAGAGCAACGATGAGGATGAA
TATGGGCTTATGACAAAGGGAGATGCAGTTGCCGAATTTCTGTTGCAAGA
AGGGACGATCCGCGTCATGCCCTTTCTAGAGCGAAGTAACCCCCGCAATA
CGAAGTATACCAAGATGAAGCTATATTGCCGAAAACAATTGCGGGCAAAG
GCGTACGAGCGATGGAAGGGCCGGAGCGGGTTGGAGGAGGAGGTTGAACG
GCGGAAGAAGCGGAGATATGAGAATGCCCTGGAAAAAATGGTGAATATAT
TCGATACTCAAAAGAAGAAATGGACCCCGCCATGA
back to top
Synonyms
Publications