NO01G04370, NO01G04370 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G04370
Unique Name	NO01G04370
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	980
Alignment location	chr1:1164130..1165109 -

Link to JBrowse

Properties


Property Name	Value
Description	Dna repair protein rad14

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1164130..1165109 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003684	damaged DNA binding
GO:0003684	damaged DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006289	nucleotide-excision repair
GO:0006289	nucleotide-excision repair

Vocabulary: **INTERPRO**
Term	Definition
IPR009061	DNA-bd_dom_put
IPR000465	XPA
IPR022656	XPA_C

Homology

[Close]

BLAST of NO01G04370 vs. NCBI_GenBank
Match: EWM29360.1 (dna repair protein rad14 [Nannochloropsis gaditana])

HSP 1 Score: 233.8 bits (595), Expect = 5.700e-58
Identity = 128/230 (55.65%), Postives = 156/230 (67.83%), Query Frame = 0

Query:   31 MLTDEQKARIEENRRRALAL-----------------XXXXXXXXXXXXXXXXXXXXLHELLAQGGFTTDGYEDDGGNKTQSTRTIPVASLSVQPPK---LAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIRVMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERRKKRRYENALEKMVNIFDTQKKK 241
            MLTDEQ+ARIEENR+RALAL                                     L  LLAQGGFT +G ED+G     ST ++P A+ S   PK   + GK G+SCEVCG+GLVDP + +VF I VC+PCK+N+E+EYGL+TKGDAVAEFLLQEGT+RVMP+LER+NPRNTKY KMKLYCR+ LRAKAYERW G  GL EE  RR++RRYE+A++K +N+F    KK
Sbjct:    1 MLTDEQRARIEENRKRALALRARKEKERLQQHAELLREQQLQLTAADTNTPESSSQALQNLLAQGGFTREGPEDEG----DSTDSVPTAAPSAPVPKATQVEGK-GLSCEVCGSGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMRVMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRRRERRYESAIDKTLNVFAKTTKK 225

[Close]

BLAST of NO01G04370 vs. NCBI_GenBank
Match: XP_500388.1 (YALI0B01474p [Yarrowia lipolytica CLIB122] >CAG82605.1 YALI0B01474p [Yarrowia lipolytica CLIB122] >AOW01078.1 hypothetical protein YALI1_B02472g [Yarrowia lipolytica] >SEI34309.1 YALIA101S04e15742g1_1 [Yarrowia lipolytica])

HSP 1 Score: 88.6 bits (218), Expect = 3.000e-14
Identity = 56/175 (32.00%), Postives = 88/175 (50.29%), Query Frame = 0

Query:   77 QGGFTTDGYEDDGGN-KTQSTRTIPVASLSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERR----KKRRYENALEKMVNI-FDTQKKKWT 243
            QGG+  D  E+D    K +  +T     +S+ P      +   C  C +  +DP FQ VF +LVC  CK    ++Y L+TK +   ++LL E  +R   ++P LE+ NP    Y  M LY RKQ+   +  +W     L+ E ERR    K+R+ +  L+K+  +   T+ + WT
Sbjct:   69 QGGYLDDEEEEDVEEWKRRQAQTFEAGPMSINP-----SENPQCAECKSFDIDPQFQSVFKLLVCRACKKKIPEKYSLLTKTEVKNDYLLTEPELRDRDLIPHLEKPNPHKKTYNNMMLYVRKQVEEFSIRKWGSLDELDAEYERRVEMKKQRKDKKYLDKLKEMRKKTRAENWT 238

[Close]

BLAST of NO01G04370 vs. NCBI_GenBank
Match: XP_018988986.1 (DNA repair protein [Cryptococcus amylolentus CBS 6039] >ODN73045.1 DNA repair protein [Cryptococcus amylolentus CBS 6039])

HSP 1 Score: 87.4 bits (215), Expect = 6.600e-14
Identity = 53/166 (31.93%), Postives = 87/166 (52.41%), Query Frame = 0

Query:   76 AQGGFTTDGYEDDGGNKTQSTRTIPVAS-------LSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERR---KKRRYENALE 229
            ++GGF T+  ED  G++ +S + +              + P +      +C  CG+  +D  F++ FG+ VC  C+    ++Y L+TK +   ++LL +  +R   ++P L R NP  + Y+ M L+ R Q+   AYE+W G  GL+EE ERR   KKR+ E   E
Sbjct:   99 SRGGFLTE--EDVTGDRIKSLKELAAEKERELRQIREGEEPAIVPGRSPTCADCGSLEIDHVFEKTFGVRVCRKCQKEKPEKYSLLTKTECKEDYLLTDPELRDEDLIPHLLRPNPYASNYSNMMLFMRAQVEKVAYEKWGGDEGLDEEWERREEFKKRKREEKFE 262

[Close]

BLAST of NO01G04370 vs. NCBI_GenBank
Match: CDS10364.1 (hypothetical protein LRAMOSA03040 [Lichtheimia ramosa])

HSP 1 Score: 86.3 bits (212), Expect = 1.500e-13
Identity = 60/220 (27.27%), Postives = 102/220 (46.36%), Query Frame = 0

Query:   19 TACIMAHSPQVSMLTDEQKARIEENRRRAL-------ALXXXXXXXXXXXXXXXXXXXXLHELL-AQGGFTTDGYEDD---GGNKTQSTRTIPVASLSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERRKKRRYE 225
            T   M  +   + L++EQ  RI++N+ +AL        L                    L  ++  +GGF  +  ++D      + ++T+  P   +S  P K        C  CG+  VDP F +VF + VC  CK    + Y L+TK +A  ++LL +  +R   ++P   + NPR   +  M LY R+ +   A+++W G  GL+ E ERR+ ++ E
Sbjct:    5 TTADMDANTTTTSLSEEQLKRIQQNKEKALEKLKAKRQLEEQQSKRPKRARWTKYYEYDLSTMVDTKGGFMVEETKEDKLIKSRREEATKISPFIPMSSDPSK-----NPKCRDCGSMDVDPVFFQVFHMSVCPACKEKYPERYSLITKTEAKEDYLLTDPELRDTELLPHWSKPNPRKATWNNMMLYVREMVEEYAFKKWGGEEGLDAEYERREAQKKE 219

[Close]

BLAST of NO01G04370 vs. NCBI_GenBank
Match: KZP00814.1 (DNA repair protein, partial [Calocera viscosa TUFC12733])

HSP 1 Score: 85.9 bits (211), Expect = 1.900e-13
Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 0

Query:  119 CEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERRK 220
            CE CG   +D  F +V+G+ VC+ CK    ++Y L+TK +  A++LL +  +R   +MP L ++NP +  Y  M L+ RKQ+ A A+ +W G  GL+ E ERR+
Sbjct:  136 CEQCGTIDIDHQFNKVYGVRVCAQCKDKFPEQYSLLTKTECKADYLLTDSELRDEQLMPHLLKANPHSATYNNMMLFLRKQVEAFAWAKWGGPEGLDAEWERRE 239

[Close]

BLAST of NO01G04370 vs. NCBI_GenBank
Match: ODN98199.1 (DNA repair protein [Cryptococcus amylolentus CBS 6273])

HSP 1 Score: 85.9 bits (211), Expect = 1.900e-13
Identity = 52/166 (31.33%), Postives = 87/166 (52.41%), Query Frame = 0

Query:   76 AQGGFTTDGYEDDGGNKTQSTRTIPVAS-------LSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERR---KKRRYENALE 229
            ++GGF T+  ED  G++ +S + +              + P +      +C  CG+  +D  F++ FG+ VC  C+    ++Y L+TK +   ++LL +  +R   ++P L R NP  + Y+ M L+ R Q+   AYE+W G  GL++E ERR   KKR+ E   E
Sbjct:   99 SRGGFLTE--EDVTGDRIKSLKELAAEKERELRQIREGEEPAIVPGRSPTCADCGSLEIDHVFEKTFGVRVCRKCQKEKPEKYSLLTKTECKEDYLLTDPELRDEDLIPHLLRPNPYASNYSNMMLFMRAQVEKVAYEKWGGDEGLDKEWERREEFKKRKREEKFE 262

[Close]

BLAST of NO01G04370 vs. NCBI_GenBank
Match: ORZ08697.1 (XPA protein C-terminus-domain-containing protein [Absidia repens])

HSP 1 Score: 85.9 bits (211), Expect = 1.900e-13
Identity = 65/217 (29.95%), Postives = 100/217 (46.08%), Query Frame = 0

Query:   25 HSPQVSM-LTDEQKARIEENRRRALALXXXXXXXXXXXXXXXXXXXXLHELLA----------------QGGFTTDGYEDDGGN--KTQSTRTIPVASLSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERRK 220
            +S   SM LTDEQ+ +IEEN+++AL                       +   A                +GGF  D   ++  N  K Q+T+  P   LS  P      D   C+ C +  VD  F +VF I VC  CK    D+Y L+TK +A  ++LL +  ++   ++P   + NPR + +  M LY R+ +   A+++W G  GL+ E ERR+
Sbjct:    2 NSTSTSMALTDEQRQKIEENKKKALEKLASRNKRALNQDDELTATSNSNNKKAKWTRFYEYDLSTMENTKGGFIVDEATEEKINRFKDQATKIEPNYLLSFDP-----LDMPKCKECQSMDVDNNFIQVFNISVCHACKEKYPDKYSLITKTEAREDYLLTDPELKDKELLPHWSKPNPRKSTWNNMMLYVREMVEEYAFKKWGGPEGLDAEYERRE 213

[Close]

BLAST of NO01G04370 vs. NCBI_GenBank
Match: XP_006815218.1 (PREDICTED: DNA repair protein complementing XP-A cells homolog [Saccoglossus kowalevskii])

HSP 1 Score: 85.1 bits (209), Expect = 3.300e-13
Identity = 65/229 (28.38%), Postives = 102/229 (44.54%), Query Frame = 0

Query:   26 SPQVSMLTDEQKARIEENRRRALALXXXXXXXXXXXXXXXXXXXXLHE-----------LLAQGGFTTDGYEDDGGNKTQSTRTIPVASLSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTI----RVMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERRKKRRYENALEKMVNIFDTQKK 240
            +P  S L+D Q+A+IE NR+RAL L                      E           L   GGF  +  ++D  NK       P   + V  P+        CE CG    D      + + +C  C+ +D D++ L+TK DA  ++LL++  +     ++ FL R NP +  + +MKLY + Q+ ++A E WK     EE ++  KK+R EN  +     FD + K
Sbjct:   18 TPSKSKLSDAQRAKIERNRQRALLLRQARLASQPYSKGKPMRRDGKAEVSSVTRSSGQVLDTGGGFLLEEDQEDEDNKINIVHE-PAPIIDVNRPR--------CEDCGKQFSDSFLSTHYNVEICDMCR-DDADKHSLITKTDAKQQYLLKDSDLDKREPILKFLVRKNPHSAGWGEMKLYLKSQVLSRALEIWKS----EENIQEEKKKRVENKEKLKQKKFDKKMK 232

[Close]

BLAST of NO01G04370 vs. NCBI_GenBank
Match: ORY99263.1 (DNA repair protein RAD14 [Syncephalastrum racemosum])

HSP 1 Score: 84.7 bits (208), Expect = 4.300e-13
Identity = 61/207 (29.47%), Postives = 95/207 (45.89%), Query Frame = 0

Query:   29 VSMLTDEQKARIEENRRRAL--------ALXXXXXXXXXXXXXXXXXXXXLHELL----AQGGFTTDGYEDDGGNK---TQSTRTIPVASLSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVER 218
            +S LTDEQK RIEEN+ +AL        A                      ++L     ++GGF  +  + D   K      TR +P+  L+  P      D   C  C +  VDP F ++F + VC  CK    + Y L+TK +A  ++LL +  +R   ++P   + NPR   ++ M LY R+ +   A+++W    GL+ E ER
Sbjct:    1 MSTLTDEQKKRIEENKAKALEKLAQKRKATEQETEDPQQRRRKARWQKYYDYDLSTIEDSKGGFLVEETKSDQKLKELQENVTRIMPMIPLAADP-----NDQPKCRDCKSLDVDPAFYQIFHLSVCPKCKEKFPERYSLITKTEAKEDYLLTDPELRDRELLPHWLKPNPRKPMWSNMMLYVREMVEEYAFKKWGSAEGLDAEYER 202

[Close]

BLAST of NO01G04370 vs. NCBI_GenBank
Match: EJU01028.1 (DNA repair protein [Dacryopinax primogenitus])

HSP 1 Score: 84.3 bits (207), Expect = 5.600e-13
Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = 0

Query:   77 QGGFTTDGYEDDGGNKTQSTRTIPV------ASLSVQPPK-LAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDEYGLMTKGDAVAEFLLQEGTIR---VMPFLERSNPRNTKYTKMKLYCRKQLRAKAYERWKGRSGLEEEVERRKK 221
            +GGF T+  E     K Q TR             +  PP  +       CE CG   +D  + +V+G+ VC+ CK    + Y L+TK +  A++LL +  +R    MP L ++NP +  Y  M L+ RKQ+ A A+E+W G  GL+ E  RR++
Sbjct:  126 KGGFLTEA-EKGEAEKAQETRRXXXXXXRERMKQNFDPPVFMNASKNPRCEQCGTIDIDHQYNKVYGVRVCAQCKDKFPELYSLLTKTECKADYLLTDSELRDETAMPHLLKANPHSATYNNMMLFLRKQVEAFAWEKWGGPKGLDAEWARREE 278

The following BLAST results are available for this feature:

BLAST of NO01G04370 vs. NCBI_GenBank

BLAST of NO01G04370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM29360.1	5.700e-58	55.65	dna repair protein rad14 [Nannochloropsis gaditana...	[more]
XP_500388.1	3.000e-14	32.00	YALI0B01474p [Yarrowia lipolytica CLIB122] >CAG826...	[more]
XP_018988986.1	6.600e-14	31.93	DNA repair protein [Cryptococcus amylolentus CBS 6...	[more]
CDS10364.1	1.500e-13	27.27	hypothetical protein LRAMOSA03040 [Lichtheimia ram...	[more]
KZP00814.1	1.900e-13	39.42	DNA repair protein, partial [Calocera viscosa TUFC...	[more]
ODN98199.1	1.900e-13	31.33	DNA repair protein [Cryptococcus amylolentus CBS 6...	[more]
ORZ08697.1	1.900e-13	29.95	XPA protein C-terminus-domain-containing protein [...	[more]
XP_006815218.1	3.300e-13	28.38	PREDICTED: DNA repair protein complementing XP-A c...	[more]
ORY99263.1	4.300e-13	29.47	DNA repair protein RAD14 [Syncephalastrum racemosu...	[more]
EJU01028.1	5.600e-13	33.12	DNA repair protein [Dacryopinax primogenitus]	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL005	nonsL005	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR047	ncniR047	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR091	ngnoR091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK007843	NSK007843	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO01G04370.1	NO01G04370.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577364	gene_454	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100028g25	gene1261	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO01G04370.1	NO01G04370.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO01G04370 ID=NO01G04370|Name=NO01G04370|organism=Nannochloropsis oceanica|type=gene|length=980bp
GTTTTTGGGGTGATGCGCGACCGATCACGCTCTCGTGACCACCGTATAGA
AGTTATTTGATTTTCAATACGGTTACTATTTTTTCTTGCACCAGCATTTT
TTCCGATGTGACCAGCGCTTCCTTTTCCTGGGTGGCACAAGAAGTCGCTC
GCTGATATCATGATTCTGCGTTATGTGCCTGTGTTATCCCAGATCACACA
GCGAAGACCACTCACCGCATGCATTATGGCCCACTCACCTCAGGTATCCA
TGCTGACAGATGAGCAAAAGGCCAGGATCGAGGAAAACAGGAGGCGGGCC
TTGGCGTTGCGAGCTCAGAAGCTCCAGGAGCAGCAGCATAGAGAGCAGCA
GCAGAAGGAGGGCGGGGCCCTCCACGAGCTGCTCGCCCAAGGAGGCTTTA
CCACGGACGGCTACGAAGACGACGGTGGGAATAAAACCCAAAGCACGAGA
ACTATCCCAGTAGCGTCACTTTCCGTCCAGCCACCCAAGCTGGCGGGGAA
GGATGGTATGTCGTGCGAGGTGTGCGGGAACGGGCTCGTGGACCCCACTT
TTCAAGAAGTCTTTGGCATCCTAGTATGCTCACCATGCAAGAGCAACGAT
GAGGATGAATATGGGCTTATGACAAAGGGAGATGCAGTTGCCGAATTTCT
GTTGCAAGAAGGGACGATCCGCGTCATGCCCTTTCTAGAGCGAAGTAACC
CCCGCAATACGAAGTATACCAAGATGAAGCTATATTGCCGAAAACAATTG
CGGGCAAAGGCGTACGAGCGATGGAAGGGCCGGAGCGGGTTGGAGGAGGA
GGTTGAACGGCGGAAGAAGCGGAGATATGAGAATGCCCTGGAAAAAATGG
TGAATATATTCGATACTCAAAAGAAGAAATGGACCCCGCCATGAGGAGGG
TGAGGAAGAGAAAGACGTAGGACTTGGGTACATGAGTGGGGGGAGAGTAA
ACGTAATCAAGAGAGGGATATGCAATGTAC

protein sequence of NO01G04370.1

>NO01G04370.1-protein ID=NO01G04370.1-protein|Name=NO01G04370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MILRYVPVLSQITQRRPLTACIMAHSPQVSMLTDEQKARIEENRRRALAL
RAQKLQEQQHREQQQKEGGALHELLAQGGFTTDGYEDDGGNKTQSTRTIP
VASLSVQPPKLAGKDGMSCEVCGNGLVDPTFQEVFGILVCSPCKSNDEDE
YGLMTKGDAVAEFLLQEGTIRVMPFLERSNPRNTKYTKMKLYCRKQLRAK
AYERWKGRSGLEEEVERRKKRRYENALEKMVNIFDTQKKKWTPP*

Synonyms

Publications