NO01G04310, NO01G04310 (gene) Nannochloropsis oceanica

Overview
NameNO01G04310
Unique NameNO01G04310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2167
Alignment locationchr1:1152707..1154873 +

Link to JBrowse

Properties
Property NameValue
DescriptionRegulator of chromosome condensation (RCC1) family protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1152707..1154873 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009091RCC1/BLIP-II
IPR000408Reg_chr_condens
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO01G04310 vs. NCBI_GenBank
Match: EWM29363.1 (putative e3 ubiquitin-protein ligase herc4 [Nannochloropsis gaditana])

HSP 1 Score: 742.7 bits (1916), Expect = 8.200e-211
Identity = 347/466 (74.46%), Postives = 404/466 (86.70%), Query Frame = 0
Query:    1 MEEEAPLQFYGCGVNSFFQLGPLMTD--GQGGGA---NDKEHTTSIPQGQHPSHHSRAQACALHLPQPLAFDRFLAEEDGPVKDLSCGSTFTVALTTRGIPYQWGILNGRAFPEPTRVSLGVPLRCMQVACGRKHTLALMEGGYIMSWGVGYFGQLGHGDDLSCDRPRMVHLLDPPRLGGDHVVAIACGGLHSAVSTAGQSVYCFGFNRYGQVGQGQTSDKISTPRPVSMSMIGPARIRQLACGRHHTSVLTDKGHVFSWGASSFGRLGLPDPKKVVTLPTEVISFRACPLAALACGDFHVLALGMDGKVYAWGYGAEGQGGLGATLHLRTPRPVEGLEGQQVAQVACGAWWSMVVTRQGRLYSWGYGDGGWLGLEHASELPYVEPCQPVTKYGATCSFDSDFNACLPSLVTALAHLKVEKVVGGGGHTIVMARRIQRRFSRAGGKVVRQEGGEGGGTRNGLAEGV 462
            M+EEAPL+FYGCG+NSFFQLGPL+++   Q  GA      + + +I QGQ+    S+ +   LHLPQPLA +R++AEEDG V+D++CG+TFT+ALT+RG+PYQWG +NGRA+PEP+RVSLGVPLRC+QV+CGRKH LALMEGG++ SWGVGYFGQLG GD+LS DRPR++H LDPPRLGGD VVA+ACGG HSAV TAGQSV+CFGFNRYGQVGQGQ  +KISTPRPV+MS IG ++IRQL CGRHHTSVLTDKG VFSWGASSFGRLGLPDPKK+V LPTEV +FR CPLAALACGDFHVL LG+DG+ YAWGYG+EGQGGLGATLHLRTPRPVEGLEG ++AQ+ACGAWWSMVVT  GRLY+WGYGDGGWLGLE AS+LPYVEPC PVTKYGATCSFDSDFNACLP++V+ L+HL+VEKVV GGGHTI+MARRIQRRFSRA  KVV  +G +G   R G  EG+
Sbjct:    1 MDEEAPLRFYGCGINSFFQLGPLVSECPSQSAGAAAQASDDGSGAIIQGQNIHFSSQEKKSVLHLPQPLALERYVAEEDGLVQDIACGATFTIALTSRGVPYQWGTVNGRAYPEPSRVSLGVPLRCLQVSCGRKHALALMEGGFVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGIGSSQIRQLVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGDFHVLGLGVDGRAYAWGYGSEGQGGLGATLHLRTPRPVEGLEGSRIAQIACGAWWSMVVTEAGRLYTWGYGDGGWLGLERASKLPYVEPCPPVTKYGATCSFDSDFNACLPAVVSTLSHLRVEKVVAGGGHTIIMARRIQRRFSRAERKVV--QGFDGHEMRRGGREGI 464          
BLAST of NO01G04310 vs. NCBI_GenBank
Match: XP_005854235.1 (hect domain and rld 4, partial [Nannochloropsis gaditana CCMP526] >EKU22126.1 hect domain and rld 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 729.9 bits (1883), Expect = 5.500e-207
Identity = 341/465 (73.33%), Postives = 398/465 (85.59%), Query Frame = 0
Query:    1 MEEEAPLQFYGCGVNSFFQLGPLMTD--GQGGGA---NDKEHTTSIPQGQHPSHHSRAQACALHLPQPLAFDRFLAEEDGPVKDLSCGSTFTVALTTRGIPYQWGILNGRAFPEPTRVSLGVPLRCMQVACGRKHTLALMEGGYIMSWGVGYFGQLGHGDDLSCDRPRMVHLLDPPRLGGDHVVAIACGGLHSAVSTAGQSVYCFGFNRYGQVGQGQTSDKISTPRPVSMSMIGPARIRQLACGRHHTSVLTDKGHVFSWGASSFGRLGLPDPKKVVTLPTEVISFRACPLAALACGDFHVLALGMDGKVYAWGYGAEGQGGLGATLHLRTPRPVEGLEGQQVAQVACGAWWSMVVTRQGRLYSWGYGDGGWLGLEHASELPYVEPCQPVTKYGATCSFDSDFNACLPSLVTALAHLKVEKVVGGGGHTIVMARRIQRRFSRAGGKVVRQEGGEGGGTRNGLAEG 461
            M+EEAPL+FYGCG+NSFFQLGPL+++   Q  GA      + + +I QGQ+    S+ +   LHLPQPLA +R++AEEDG V+D++CG+TFT+ALT+RG+PYQWG +NGRA+PEP+RVSLGVPLRC+QV+CGRKH LALMEGG++ SWGVGYFGQLG GD+LS DRPR++H LDPPRLGGD VVA+ACGG HSAV TAGQSV+CFGFNRYGQVGQGQ  +KISTPRPV+MS IG ++IRQL CGRHHTSVLTDKG VFSWGASSFGRLGLPDPKK+V LPTEV +FR CPLAALACGDFHVL LG+DG+ YAWGYG+EGQGGLGATLHLRTPRPVEGLEG ++AQ+ACGAWWSMVVT  GRLY+WGYGDGGWLGLE AS+LPYVEPC PVTKYGATCSFDSDFNACLP++V+ L+HL+VEKVV GGGHTI+MARRIQRR  +    +   +GG G  T  G  EG
Sbjct:   47 MDEEAPLRFYGCGINSFFQLGPLVSECPSQSAGAAAQASDDGSGAIIQGQNIHFSSQEKKSVLHLPQPLALERYVAEEDGLVQDIACGATFTIALTSRGVPYQWGTVNGRAYPEPSRVSLGVPLRCLQVSCGRKHALALMEGGFVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGIGSSQIRQLVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGDFHVLGLGVDGRAYAWGYGSEGQGGLGATLHLRTPRPVEGLEGSRIAQIACGAWWSMVVTEAGRLYTWGYGDGGWLGLERASKLPYVEPCPPVTKYGATCSFDSDFNACLPAVVSTLSHLRVEKVVAGGGHTIIMARRIQRRLCKDLMDMKSGKGGRGSRTA-GQGEG 510          
BLAST of NO01G04310 vs. NCBI_GenBank
Match: CBN74531.1 (similar to retinitis pigmentosa GTPase regulator [Ectocarpus siliculosus])

HSP 1 Score: 369.4 bits (947), Expect = 1.900e-98
Identity = 181/392 (46.17%), Postives = 245/392 (62.50%), Query Frame = 0
Query:   48 SHHSRAQACALHLPQPLAFDRFLAEEDGPVKDLSCGSTFTVALTTRGIPYQWGILNGRAFPEPTRVSLGVPLRCMQVACGRKHTLALMEGGYIMSWGVGYFGQLGHGDDLSCDRPRMVHLLDPPRLGGDHVVAIACGGLHSAVSTAGQSVYCFGFNRYGQVGQGQTSDKISTPRPVSMSMIGP---ARIRQLACGRHHTSVLTDKGHVFSWGASSFGRLGLPDPKKVVTLPTEVISFRACPLAALACGDFHVLALGMDGKVYAWGYGAEGQGGLGATLHLRTPRPVEGLEGQQVAQVACGAWWSMVVTRQGRLYSWGYGDGGWLGLEHASELPYVEPCQPVTKYGATCSFDSDFNACLPSLVTALAHLKVEKVVGGGGHTIVMARRIQRRFS 437
            S   R  A     P+ +  DRF+ + D P    + G+  ++  T+ G  ++WG+ +G   P PT V   +PL C++V CGRKHT+ALM+GG++MSWG GYFGQLGHGD+ S   PR++  LDP RL G+ VV +ACGG HSAV+T    V+ +GFNRYGQ G G   + +  P  V +S + P     + ++ CGRHH++++T  G +++WGA SFG+LGL D +K V +P EV  F   PL   A GDFH++AL    +V++WGYGAEGQGG G+ LH+R PR V  L+   VAQV CG WWSM +T  G  Y+WG  DGGW GL     L  V+P     +   T SFDS  N  +P+LV +LA  KV +V  GGGHT+V+A+R  R  S
Sbjct:   24 SKEPRICASVQETPKAVPLDRFVKKGDSPA-FAAAGANHSILRTSEGKLFRWGVEDGDVHPFPTGVCTQIPLPCIEVCCGRKHTVALMKGGFVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRL-GERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNGSKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGKLGLQDAEKTVCIPQEVTFFSDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAITVDGYCYAWGSADGGWTGLTRPPGLRVVDPGPSADRAVETQSFDSTHNVHVPALVYSLAPYKVLQVGCGGGHTLVVAKRRARPVS 413          
BLAST of NO01G04310 vs. NCBI_GenBank
Match: XP_002182991.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC45727.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 177.2 bits (448), Expect = 1.400e-40
Identity = 105/302 (34.77%), Postives = 153/302 (50.66%), Query Frame = 0
Query:   77 VKDLSCGSTFTVALTTRGIPYQWGI---------LNGRAFPEPTRVSLGVPLRCMQVACGRKHTLALMEGGYIMSWGVGYFGQLGHGDDLSCDRPRMVHLLDPPRLGGDHVVAIACGGLHSAVSTAGQSVYCFGFNRYGQVGQGQTSDKISTPRPVSMSMIGPARIRQLACGRHHTSVLTDKGHVFSWGASSFGRLGLPDPKKVVTLPTEVISFRACPLAALACGDFHVLALGMDGKVYAWGYGAEGQGGLGATLHLRTPRPVEGLEGQQVAQVACGAWWSMVVTRQGRLYSWGYGDGGWLG 370
            V+ ++CGS  TV LTT G  + WG           NG  +      SL   +  +QV CG  HT A+   G + +WG G +G+LGHGD+     P+ V       L G  V  IACG  H+A+ TA  ++Y +G    G  G G+T      PR   +  +   R+ Q++    HT+++TD G +F+WG   FGRLG    +   + PT V          ++CG FH   +  DG++Y +G G  GQ G    ++  TP  VE L+G  V+Q+ CG   S+ +T +G +Y+WG GD G LG
Sbjct:   35 VQQIACGSGHTVVLTTDGEVFTWGRGDDGRLGHGDNGWKYVPRMTQSLAGQI-VLQVTCGSYHTAAVTGNGDLYTWGGGMYGKLGHGDEAGHATPKRVE-----ALVGATVAQIACGSRHTAIVTASGALYTWGDKENGVAGHGETEGHQYLPR--LLESMAAKRVAQISACGFHTAIVTDAGELFTWGEGKFGRLGHMSERNCHS-PTIVDYMVGKKPRQVSCGGFHTAVVSEDGRLYTFGGGEHGQLGHNDRVNKMTPTFVEALDGMFVSQITCGWSHSVALTVKGLVYTWGNGDHGKLG 327          
BLAST of NO01G04310 vs. NCBI_GenBank
Match: GAX29431.1 (hypothetical protein FisN_16Hh128 [Fistulifera solaris])

HSP 1 Score: 176.8 bits (447), Expect = 1.800e-40
Identity = 124/412 (30.10%), Postives = 189/412 (45.87%), Query Frame = 0
Query:   52 RAQACALHLPQPLAFDRFLAEEDGPVKDLSCGSTFTVALTTRGIPYQWGILNGRAFPEPTRVSLGVPLRCMQVACGRKHTLALMEGGY-IMSWGVGYFGQLGHGDDLS---CDRPRMVHLLDPPRLGGDHVVAIACGGLHSAVSTAGQSVYCFGFNRYGQVGQGQTSDKISTPRPVSMSMIGPA--RIRQLACGR-HHTSVLTDKGHVFSWGASSFGRLGLPDPKKV--VTLPTEVISFRACPLAALACGDFHVLALGMDGKVYAWGYGAEGQGGLGATLHLRT-PRPVEGLE------GQ------------------QVAQVACGAWWSMVVTRQGRLYSWGYGDGGWLGLEHASELPYVEPCQPVTKYGATC------SFDSDFNACLPSLVTALAHLKVEKVVGGGGH 424
            ++Q  ++   +P  +    A     V+   C +  TV LT+ G  YQ G L+G+ F  PT V +   L+C+++A GR   L  +EGG  ++SWG G+FGQLG G D        P ++  L  PR  G  +  IA G  H+        V+ +G NR  Q G+  TS  ++     ++ +  P    + Q++ GR H  +++   G V+ WGAS FG+      + V  V  P  V S +   +  ++ G  H L L   G+V+AWG G EGQ GLG  +  +T PR +  L+      GQ                  ++  +  G  +S+     G LY WG  D G LG+   S LP+++ CQ   +   +       +FDS+ N  LP  + A   L V  V  G  H
Sbjct:    5 KSQQKSIAFGKPYFYATKSAPSGKTVEQAVCTNQSTVFLTSDGKIYQTGTLHGQIFKSPTLVEIRYALKCVEIAAGRHFCLGRLEGGQAVVSWGAGHFGQLGLGGDKMVSFTSSPTIIERL-LPRHTGSPIKQIAAGSWHALALAESGKVWAWGSNRNWQCGRQLTSKSLTDAPTFTVPLPVPQLDGVDQISAGRAHSVALIAQSGEVYCWGASHFGQCAASVRRGVSGVAPPKLVQSLQDVLVTKVSAGGNHTLCLTSGGRVFAWGAGGEGQLGLGVPVPYQTKPRLIGDLDFVAIAAGQDWKKQQKGASAKSLASVPKIRDIFAGPTYSVATCTTGHLYVWGSNDAGQLGVPAPSNLPFLDSCQETRQQNGSLRDMHVRTFDSNHNLLLPHRLIAAEPLDVTFVACGPNH 415          
BLAST of NO01G04310 vs. NCBI_GenBank
Match: KZS10254.1 (E3 ubiquitin-protein ligase HERC2 [Daphnia magna])

HSP 1 Score: 176.0 bits (445), Expect = 3.100e-40
Identity = 109/306 (35.62%), Postives = 154/306 (50.33%), Query Frame = 0
Query:  124 VACGRKHTLALMEGGYIMSWGVGYFGQLGHGDDLSCDRPRMVHLLDPPRLGGDHVVAIACGGLHSAVSTAGQSVYCFGFNRYGQVGQGQTSDKISTPRPVSMSMIGPARIRQLACGR--HHTSVLT--DKGHVFSWGASSFGRLGLPDPKKVVTLPTEVISFRACPLAALACGDFHVLALGMDGKVYAWGYGAEGQGGLGATLHLRTPRPVEGLEGQQVAQVACGAWWSMVVTRQGRLYSWGYGDGGWLGLEHASELPYVEPCQPVTKYGATCSFDSDFNACLPSLVTALAHLKVEKVVGGGGHTI 426
            V  G KH LAL   G + SWG G  G+LGHG+ L CDRPR++       L G  VV +ACGG HSA  TA   +Y +G  RYG++G G + D++   +P  +  +   R++ +ACG     T  +T  D G V+SWG   +G+LG         +PT++ S     +  + CG    +AL  +G VY WG G   + G GA  H+R P+ V  L+G++V  ++ GA   +V T QG +Y+WG  D G LG                   G T           P LVTAL + K+ +V  G  HT+
Sbjct: 4024 VNSGGKHCLALSSEGEVYSWGEGEDGKLGHGNKLPCDRPRIIE-----SLRGKDVVDVACGGAHSAAITASGELYTWGKGRYGRLGHGDSDDQL---KPKLVEALVGYRVKDVACGSGDAQTCAITEEDGGTVWSWGDGDYGKLG-RGGSDGCKIPTKIESLSGKSIVKVECGSQFSVALSSNGSVYTWGKGDYHRLGHGADEHVRRPKKVMTLQGKKVISISTGALHCVVCTDQGEVYTWGDNDEGQLG------------------DGTTTGIQK------PRLVTALQNKKINRVSCGSAHTV 4296          
BLAST of NO01G04310 vs. NCBI_GenBank
Match: XP_006821411.1 (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2-like [Saccoglossus kowalevskii])

HSP 1 Score: 174.1 bits (440), Expect = 1.200e-39
Identity = 118/359 (32.87%), Postives = 169/359 (47.08%), Query Frame = 0
Query:   80 LSCGSTFTVALTTRGIPYQWG-ILNGR----------AFPEPTRVSLGVPLRCMQVACGRKHTLALMEGGYIMSWGVGYFGQLGHGDDLSCDRPRMVHLLDPPRLGGDHVVAIACGGLHSAVSTAGQSVYCFGFNRYGQVGQGQTSDKISTPRPVSMSMIGPARIRQLACGRH--HTSVLTDKGHVFSWGASSFGRLGLPDPKKVVTLPTEVISFRACPLAALACGDFHVLALGMDGKVYAWGYGAEGQGGLGATLHLRTPRPVEGLEGQQVAQVACGAWWSMVVTRQGRLYSWGYGDGGWLGLEHASELPYVEPCQPVTKYGATCSFDSDFNACLPSLVTALAHLKVEKVVGGGGHTI 426
            +S GS     +T  G  Y  G   NGR          A P+P        +R + V  G +H +AL   G + SWG G  G+LGH   ++CD+PR++  L   R     V  IACG  HSA  T+  ++Y +G   YG++G G  + ++   +P  +  +   R+ Q+ACG     T  LTD+G VFSWG   FG+LG    + V T P  V       +  + CG    LAL   G+V+ WG G   + G G+  H+R P+ VEGL+G+++  VA GA   + VT  G++Y+WG  D G  G               V K               P+LV  L  +K+ KV  G  H+I
Sbjct: 2928 ISGGSKSLFIVTQEGKMYACGESTNGRLGLGPVTGNVAMPKPVTSLSQYVVRKVAVHSGGRHAMALTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEALKTKR-----VRDIACGSSHSAAITSDGALYTWGLGEYGRLGHGDNTTQL---KPKQVKTLSGQRVVQVACGSRDAQTLALTDEGMVFSWGDGDFGKLGRGGSEGVNT-PHNVERLNGQGVTQIECGAQFSLALTKTGQVWTWGKGDYYRLGHGSDAHVRKPQVVEGLKGKKIVHVAVGALHCLAVTDNGQVYAWGDNDHGQQG----------NGMTTVNK--------------KPALVHGLEGVKITKVACGSSHSI 3253          
BLAST of NO01G04310 vs. NCBI_GenBank
Match: EFX81111.1 (hypothetical protein DAPPUDRAFT_50378 [Daphnia pulex])

HSP 1 Score: 172.9 bits (437), Expect = 2.600e-39
Identity = 118/360 (32.78%), Postives = 170/360 (47.22%), Query Frame = 0
Query:   80 LSCGSTFTVALTTRGIPYQWGILNGRAFPEPTRVSLGVP----------LRCMQVACGRKHTLALMEGGYIMSWGVGYFGQLGHGDDLSCDRPRMVHLLDPPRLGGDHVVAIACGGLHSAVSTAGQSVYCFGFNRYGQVGQGQTSDKISTPRPVSMSMIGPARIRQLACGR--HHTSVLTDK--GHVFSWGASSFGRLGLPDPKKVVTLPTEVISFRACPLAALACGDFHVLALGMDGKVYAWGYGAEGQGGLGATLHLRTPRPVEGLEGQQVAQVACGAWWSMVVTRQGRLYSWGYGDGGWLGLEHASELPYVEPCQPVTKYGATCSFDSDFNACLPSLVTALAHLKVEKVVGGGGHTI 426
            L+ G     A+T+ G  Y  G   G         S+ VP          ++ + V  G KH LAL   G + SWG G  G+LGHG+ L CDRPR++       L G  VV +ACGG HSA  TA   +Y +G  RYG++G G + D++   +P  +  +   R+  +ACG     T  +TD+  G V+SWG   +G+LG         +PT++ S     +  + CG    +AL  +G VY WG G   + G G   H+R P+ V  L+G++V  ++ GA   +V T QG +Y+WG  D G LG                   G T           P LV AL + K+ +V  G  HT+
Sbjct: 3652 LAGGEQTLFAITSDGRVYATGYGAGGRLGIGGAESVTVPSLLESLQHVFVKKVAVNSGGKHCLALSSEGEVYSWGEGEDGKLGHGNKLPCDRPRIIE-----SLRGKDVVDVACGGAHSAAITALGELYTWGKGRYGRLGHGDSDDQL---KPKLVEALLGYRVMDVACGSGDAQTCAITDEEGGTVWSWGDGDYGKLG-RGGSDGCKIPTKIESLSGLGIIKVECGSQFSVALSNNGSVYTWGKGDYHRLGHGVDEHVRRPKKVMTLQGKKVISISTGALHCVVCTDQGEVYTWGDNDEGQLG------------------DGTTTGIQK------PRLVAALQNKKINRVSCGSAHTV 3978          
BLAST of NO01G04310 vs. NCBI_GenBank
Match: XP_002959204.1 (hypothetical protein VOLCADRAFT_70529 [Volvox carteri f. nagariensis] >EFJ39741.1 hypothetical protein VOLCADRAFT_70529 [Volvox carteri f. nagariensis])

HSP 1 Score: 171.4 bits (433), Expect = 7.600e-39
Identity = 107/314 (34.08%), Postives = 164/314 (52.23%), Query Frame = 0
Query:   74 DGPVKDLSCGSTFTVALT-TRGIPYQW----------GILNGRAFPEPTRVSLGVPLRCMQVACGRKHTLALMEGGYIMSWGVGYFGQLGHGDDLSCDRPRMVHLLDPPRLGGDHVVAIACGGLHSAVSTAGQSVYCFGFNRYGQVGQGQTSDKISTPRPVSMSMIGPARIRQLACGRHHTSVLTDKGHVFSWGASSFGRLGLPDPKKVVTLPTEVISFRACPLAALACGDFHVLALGMDGKVYAWGYGAEGQGGLGATLHLRTPRPVEG-LEGQQVAQVACGAWWSMVVTRQGRLYSWGYGDGGWLGLEHASE 376
            D  ++ + CG+ +T+A+  +RG  Y W          G  N    P P     G P+   +VACG  HTL +   G + ++G    GQLG G    C  P++V  L      G+ V ++ACG  HS  +T   +V+ +G+ RYG +G G++ D+    R V +  I   R+    CG  H++V+++ G VF++G S +G+LG  D     T+P +V + R   ++++A G  H +A    G +Y WG+   GQ GLG +    +P  V G L GQ+V+ V CG   ++ VT  GR+YSWG G  G LG  H +E
Sbjct:   64 DAGIESVVCGAEYTIAVAPSRGQVYSWGWGDFGRLGHGDCNDVFVPRPIEFFSGRPVH--RVACGDTHTLVVAGEGELFTFGRNQNGQLGLGHTNDCLSPQLVVALQ-----GERVRSVACGSEHSLAATESGTVFSWGWGRYGNLGDGESQDRYLPTRVVGLEGI---RMVSAECGWRHSAVVSEDGRVFTFGWSKYGQLGHGDHTD-RTVPCQVAALRHTRISSVAGGWRHTMAADSSGNLYGWGWNKFGQLGLGDSSDRPSPVLVGGALAGQRVSLVTCGWRHTVAVTEGGRVYSWGRGVNGQLG--HGAE 364          
BLAST of NO01G04310 vs. NCBI_GenBank
Match: XP_014791308.1 (PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Octopus bimaculoides] >KOF95815.1 hypothetical protein OCBIM_22037142mg [Octopus bimaculoides])

HSP 1 Score: 169.5 bits (428), Expect = 2.900e-38
Identity = 108/312 (34.62%), Postives = 153/312 (49.04%), Query Frame = 0
Query:  119 LRCMQVACGRKHTLALMEGGYIMSWGVGYFGQLGHGDDLSCDRPRMVHLLDPPRLGGDHVVAIACGGLHSAVSTAGQSVYCFGFNRYGQVGQGQTSDKISTPRPVSMSMIGPARIRQLACGR--HHTSVLTDKGHVFSWGASSFGRLGL--PDPKKVVTLPTEVISFRACPLAALACGDFHVLALGMDGKVYAWGYGAEGQGGLGATLHLRTPRPVEGLEGQQVAQVACGAWWSMVVTRQGRLYSWGYGDGGWLGLEHASELPYVEPCQPVTKYGATCSFDSDFNAC-LPSLVTALAHLKVEKVVGGGGHTI 426
            ++ + V  G KH LAL   G + +WG G  G+LGHG  + CDRPRMV       L G  V+ IA GG HSA  TA   +Y +G  RYG++G G + D+    +P  + ++   R+  +ACG     T  +TD   V+SWG   +G+LG    D  KV   P ++ S ++  +  + CG    +AL   G VY WG G   + G G   H+R PR V  L+G++V  +ACG+   +  T  G +Y+WG  D G LG                         D   NA   P LVTAL   K+ +V  G  H++
Sbjct: 3865 IKKLAVNSGGKHCLALSAEGEVFTWGEGEDGKLGHGIKIPCDRPRMVE-----ALRGKEVIDIAAGGAHSACITASGELYTWGKGRYGRLGHGDSDDQ---TKPKLVEVLKDYRVIDVACGSGDAQTLCITDDDSVWSWGDGDYGKLGRGGSDGCKV---PIKIESLQSLGVIKVECGSQFSVALTQSGAVYTWGKGDYHRLGHGTDDHVRKPRRVSALQGKKVIDIACGSLHCVACTDTGEVYTWGDNDEGQLG-------------------------DGTTNAIQRPRLVTALQGTKINRVACGSAHSL 4140          
The following BLAST results are available for this feature:
BLAST of NO01G04310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29363.18.200e-21174.46putative e3 ubiquitin-protein ligase herc4 [Nannoc... [more]
XP_005854235.15.500e-20773.33hect domain and rld 4, partial [Nannochloropsis ga... [more]
CBN74531.11.900e-9846.17similar to retinitis pigmentosa GTPase regulator [... [more]
XP_002182991.11.400e-4034.77predicted protein, partial [Phaeodactylum tricornu... [more]
GAX29431.11.800e-4030.10hypothetical protein FisN_16Hh128 [Fistulifera sol... [more]
KZS10254.13.100e-4035.62E3 ubiquitin-protein ligase HERC2 [Daphnia magna][more]
XP_006821411.11.200e-3932.87PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-prote... [more]
EFX81111.12.600e-3932.78hypothetical protein DAPPUDRAFT_50378 [Daphnia pul... [more]
XP_002959204.17.600e-3934.08hypothetical protein VOLCADRAFT_70529 [Volvox cart... [more]
XP_014791308.12.900e-3834.62PREDICTED: E3 ubiquitin-protein ligase HERC2-like ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007851NSK007851Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04310.1NO01G04310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636785gene_448Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100028g31gene1266Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04310.1NO01G04310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04310 ID=NO01G04310|Name=NO01G04310|organism=Nannochloropsis oceanica|type=gene|length=2167bp
ATGGAGGAGGAAGCGCCTCTGCAGTTTTACGGCTGTGGAGTCAATTCGTT
TTTCCAACTCGGGCCTCTCATGACCGATGGCCAAGGCGGAGGAGCAAACG
ACAAGGAACACACCACAAGTATTCCCCAAGGCCAGCATCCGTCCCATCAT
TCACGAGCGCAGGCTTGTGCCCTTCATTTACCTCAGCCTCTTGCGTTTGA
TCGATTTTTGGCGGAGGAGGACGGCCCTGTAAAGGATTTGTCATGTGGCT
CGACGTTCACCGTTGCCTTGACGACCCGCGGCATTCCGTATCAGTGGGGG
ATCTTGAATGgtacgtttgcgcgcatgaaaagaggagatggagagatccg
aagaaaatgttgcgcacgtataatagagagaccgaatgagagtctgattt
acttctaacacagGGCGGGCTTTCCCGGAACCGACGCGGGTCTCGTTGGG
CGTGCCCTTGCGGTGCATGCAAGTGGCATGTGGCCGTAAGCATACACTAG
CATTAATGGAGGGAGGTTATATCATGAGCTGGGgtacgtgctgcttttta
tatgacgaggatgggcaagagcaagaaataccggtgtgcgagcggcgagc
agagggaagcccactcattcctcccgtttcctccctccctccctccttcc
ctccctctttccgtcctttccagGTGTCGGCTATTTCGGCCAGCTTGGGC
ACGGTGACGACCTTTCGTGTGACAGGCCGCGGATGGTCCACCTGTTGGAT
CCTCCCCGCTTGGGGGGAGATCATGTCGTGGCCATTGCGTGTGGGGGGTT
GCATTCCGCCGTGTCGACAGCGGGGCAGTCGGTGTATTGTTTCGGGTTTA
ACCGATACGGGCAGGTGGGGCAGGGGCAGACGAGTGATAAAATTTCTACA
CCGCGGCCAGTGAGCATGAGCATGATAGgtaggtgctcgagagaaagaga
gggaggaggggagggagggagggagaggagggagggagaggaaccggaag
ttgcgtgtcttcaccatccttattcgttctacctctctccctcatttcct
ccattcaccctcagGTCCTGCAAGAATACGACAATTGGCCTGCGGGCGGC
ATCACACCTCCGTTTTAACAGACAAGGGACATGTCTTCTCTTGGGGTGCA
TCTTCCTTCGGTCGTCTCGGCCTGCCGGACCCCAAAAAAGTAGTCACATT
GCCGACAGAAGTCATTTCTTTTCGCGCGTGCCCTCTCGCGGCATTGGCCT
GCGGGGACTTTCATGTGCTGGCGTTGGGGATGGATGGGAAGGTTTATGCG
TGGGGGTATGGGGCCGAAGGACAGGGGGGACTGGGCGCAACGTTGCATTT
GAGGACTCCCCGACCAGTGGAGGGATTGGAAGGGCAGCAGGTGGCGCAGG
TGGCGTGTGGAGCGTGGTGGTCGATGGTGGTGACGAGACAAGGgtacgtt
gaagtggacttttgtgcggggggcggtagaaagagtaggcggaggtcgtc
cggtggcccgggaggagaaggacaacggcgtccatgttccttgctccttc
cttgtgcagtggtctcgtctcatccgctttctcccttcctatctttttct
atctcttccccccttctcttcagACGCCTGTACTCCTGGGGCTACGGTGA
CGGTGGCTGGCTTGGACTCGAGCACGCATCGGAACTCCCCTATGTGGAGC
CATGTCAACCTGTAACCAAATACGGAGCCACTTGTTCATTTGACAGCGAC
TTTAATGCTTGCTTGCCCAGCCTTGTCACAGCTTTGGCCCATCTAAAGGT
TGAAAAAGTCGTCGGCGGCGGCGGGCACACGATTGTCATGGCTAGGAGGA
TACAAAGGAGGTTCTCGAGGGCGGGAGGTAAGGTGGTGAGGCAGGAAGGT
GGGGAAGGAGGTGGGACGAGGAATGGGCTTGCAGAGGGGGTAGAGTCCAT
GTCTTTGGTGAACTCGGATGAAGAAGGCGAGGAGAATAGGCAGGAAGAAG
AGGAAGGTGGTGCAGGTGCAGAAAGGGCGAATGCCAGTCGTCGGGGGTGT
GGGGCTAGCACGAGAAGCAGCACCTCGTCAAGCTCCTCATCCTCGTCGTC
CTCCTTCTCGTCGTCTTCGTTCTCCTCCACCTCCAAATCCTCGGCATCTA
GTATGCCCACAACATGA
back to top

protein sequence of NO01G04310.1

>NO01G04310.1-protein ID=NO01G04310.1-protein|Name=NO01G04310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=536bp
MEEEAPLQFYGCGVNSFFQLGPLMTDGQGGGANDKEHTTSIPQGQHPSHH
SRAQACALHLPQPLAFDRFLAEEDGPVKDLSCGSTFTVALTTRGIPYQWG
ILNGRAFPEPTRVSLGVPLRCMQVACGRKHTLALMEGGYIMSWGVGYFGQ
LGHGDDLSCDRPRMVHLLDPPRLGGDHVVAIACGGLHSAVSTAGQSVYCF
GFNRYGQVGQGQTSDKISTPRPVSMSMIGPARIRQLACGRHHTSVLTDKG
HVFSWGASSFGRLGLPDPKKVVTLPTEVISFRACPLAALACGDFHVLALG
MDGKVYAWGYGAEGQGGLGATLHLRTPRPVEGLEGQQVAQVACGAWWSMV
VTRQGRLYSWGYGDGGWLGLEHASELPYVEPCQPVTKYGATCSFDSDFNA
CLPSLVTALAHLKVEKVVGGGGHTIVMARRIQRRFSRAGGKVVRQEGGEG
GGTRNGLAEGVESMSLVNSDEEGEENRQEEEEGGAGAERANASRRGCGAS
TRSSTSSSSSSSSSSFSSSSFSSTSKSSASSMPTT*
back to top
Synonyms
Publications