NO01G04310.1, NO01G04310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04310.1
Unique NameNO01G04310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1608
Alignment locationchr1:1152707..1154873 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1152707..1154873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04310.1 vs.
Match: EWM29363.1 (putative e3 ubiquitin-protein ligase herc4 [Nannochloropsis gaditana])

HSP 1 Score: 742.3 bits (1915), Expect = 1.100e-210
Identity = 347/466 (74.46%), Postives = 405/466 (86.91%), Query Frame = 0 
Query:    1 MEEEAPLQFYGCGVNSFFQLGPLMTD--GQGGGANDK---EHTTSIPQGQHPSHHSRAQACALHLPQPLAFDRFLAEEDGPVKDLSCGSTFTVALTTRGIPYQWGILNGRAFPEPTRVSLGVPLRCMQVACGRKHTLALMEGGYIMSWGVGYFGQLGHGDDLSCDRPRMVHLLDPPRLGGDHVVAIACGGLHSAVSTAGQSVYCFGFNRYGQVGQGQTSDKISTPRPVSMSMIGPARIRQLACGRHHTSVLTDKGHVFSWGASSFGRLGLPDPKKVVTLPTEVISFRACPLAALACGDFHVLALGMDGKVYAWGYGAEGQGGLGATLHLRTPRPVEGLEGQQVAQVACGAWWSMVVTRQGRLYSWGYGDGGWLGLEHASELPYVEPCQPVTKYGATCSFDSDFNACLPSLVTALAHLKVEKVVGGGGHTIVMARRIQRRFSRAGGKVVRQEGGEGGGTRNGLAEGV 462
            M+EEAPL+FYGCG+NSFFQLGPL+++   Q  GA  +   + + +I QGQ+    S+ +   LHLPQPLA +R++AEEDG V+D++CG+TFT+ALT+RG+PYQWG +NGRA+PEP+RVSLGVPLRC+QV+CGRKH LALMEGG++ SWGVGYFGQLG GD+LS DRPR++H LDPPRLGGD VVA+ACGG HSAV TAGQSV+CFGFNRYGQVGQGQ  +KISTPRPV+MS IG ++IRQL CGRHHTSVLTDKG VFSWGASSFGRLGLPDPKK+V LPTEV +FR CPLAALACGDFHVL LG+DG+ YAWGYG+EGQGGLGATLHLRTPRPVEGLEG ++AQ+ACGAWWSMVVT  GRLY+WGYGDGGWLGLE AS+LPYVEPC PVTKYGATCSFDSDFNACLP++V+ L+HL+VEKVV GGGHTI+MARRIQRRFSRA  KVV  +G +G   R G  EG+
Sbjct:    1 MDEEAPLRFYGCGINSFFQLGPLVSECPSQSAGAAAQASDDGSGAIIQGQNIHFSSQEKKSVLHLPQPLALERYVAEEDGLVQDIACGATFTIALTSRGVPYQWGTVNGRAYPEPSRVSLGVPLRCLQVSCGRKHALALMEGGFVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGIGSSQIRQLVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGDFHVLGLGVDGRAYAWGYGSEGQGGLGATLHLRTPRPVEGLEGSRIAQIACGAWWSMVVTEAGRLYTWGYGDGGWLGLERASKLPYVEPCPPVTKYGATCSFDSDFNACLPAVVSTLSHLRVEKVVAGGGHTIIMARRIQRRFSRAERKVV--QGFDGHEMRRGGREGI 464
The following BLAST results are available for this feature:
BLAST of NO01G04310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29363.11.100e-21074.46putative e3 ubiquitin-protein ligase herc4 [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04310NO01G04310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04310.1NO01G04310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04310.1.cds1NO01G04310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04310.1.cds2NO01G04310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04310.1.cds3NO01G04310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04310.1.cds4NO01G04310.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04310.1.cds5NO01G04310.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04310.1 ID=NO01G04310.1|Name=NO01G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1608bp
ATGGAGGAGGAAGCGCCTCTGCAGTTTTACGGCTGTGGAGTCAATTCGTT
TTTCCAACTCGGGCCTCTCATGACCGATGGCCAAGGCGGAGGAGCAAACG
ACAAGGAACACACCACAAGTATTCCCCAAGGCCAGCATCCGTCCCATCAT
TCACGAGCGCAGGCTTGTGCCCTTCATTTACCTCAGCCTCTTGCGTTTGA
TCGATTTTTGGCGGAGGAGGACGGCCCTGTAAAGGATTTGTCATGTGGCT
CGACGTTCACCGTTGCCTTGACGACCCGCGGCATTCCGTATCAGTGGGGG
ATCTTGAATGGGCGGGCTTTCCCGGAACCGACGCGGGTCTCGTTGGGCGT
GCCCTTGCGGTGCATGCAAGTGGCATGTGGCCGTAAGCATACACTAGCAT
TAATGGAGGGAGGTTATATCATGAGCTGGGGTGTCGGCTATTTCGGCCAG
CTTGGGCACGGTGACGACCTTTCGTGTGACAGGCCGCGGATGGTCCACCT
GTTGGATCCTCCCCGCTTGGGGGGAGATCATGTCGTGGCCATTGCGTGTG
GGGGGTTGCATTCCGCCGTGTCGACAGCGGGGCAGTCGGTGTATTGTTTC
GGGTTTAACCGATACGGGCAGGTGGGGCAGGGGCAGACGAGTGATAAAAT
TTCTACACCGCGGCCAGTGAGCATGAGCATGATAGGTCCTGCAAGAATAC
GACAATTGGCCTGCGGGCGGCATCACACCTCCGTTTTAACAGACAAGGGA
CATGTCTTCTCTTGGGGTGCATCTTCCTTCGGTCGTCTCGGCCTGCCGGA
CCCCAAAAAAGTAGTCACATTGCCGACAGAAGTCATTTCTTTTCGCGCGT
GCCCTCTCGCGGCATTGGCCTGCGGGGACTTTCATGTGCTGGCGTTGGGG
ATGGATGGGAAGGTTTATGCGTGGGGGTATGGGGCCGAAGGACAGGGGGG
ACTGGGCGCAACGTTGCATTTGAGGACTCCCCGACCAGTGGAGGGATTGG
AAGGGCAGCAGGTGGCGCAGGTGGCGTGTGGAGCGTGGTGGTCGATGGTG
GTGACGAGACAAGGACGCCTGTACTCCTGGGGCTACGGTGACGGTGGCTG
GCTTGGACTCGAGCACGCATCGGAACTCCCCTATGTGGAGCCATGTCAAC
CTGTAACCAAATACGGAGCCACTTGTTCATTTGACAGCGACTTTAATGCT
TGCTTGCCCAGCCTTGTCACAGCTTTGGCCCATCTAAAGGTTGAAAAAGT
CGTCGGCGGCGGCGGGCACACGATTGTCATGGCTAGGAGGATACAAAGGA
GGTTCTCGAGGGCGGGAGGTAAGGTGGTGAGGCAGGAAGGTGGGGAAGGA
GGTGGGACGAGGAATGGGCTTGCAGAGGGGGTAGAGTCCATGTCTTTGGT
GAACTCGGATGAAGAAGGCGAGGAGAATAGGCAGGAAGAAGAGGAAGGTG
GTGCAGGTGCAGAAAGGGCGAATGCCAGTCGTCGGGGGTGTGGGGCTAGC
ACGAGAAGCAGCACCTCGTCAAGCTCCTCATCCTCGTCGTCCTCCTTCTC
GTCGTCTTCGTTCTCCTCCACCTCCAAATCCTCGGCATCTAGTATGCCCA
CAACATGA
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protein sequence of NO01G04310.1

>NO01G04310.1-protein ID=NO01G04310.1-protein|Name=NO01G04310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=536bp
MEEEAPLQFYGCGVNSFFQLGPLMTDGQGGGANDKEHTTSIPQGQHPSHH
SRAQACALHLPQPLAFDRFLAEEDGPVKDLSCGSTFTVALTTRGIPYQWG
ILNGRAFPEPTRVSLGVPLRCMQVACGRKHTLALMEGGYIMSWGVGYFGQ
LGHGDDLSCDRPRMVHLLDPPRLGGDHVVAIACGGLHSAVSTAGQSVYCF
GFNRYGQVGQGQTSDKISTPRPVSMSMIGPARIRQLACGRHHTSVLTDKG
HVFSWGASSFGRLGLPDPKKVVTLPTEVISFRACPLAALACGDFHVLALG
MDGKVYAWGYGAEGQGGLGATLHLRTPRPVEGLEGQQVAQVACGAWWSMV
VTRQGRLYSWGYGDGGWLGLEHASELPYVEPCQPVTKYGATCSFDSDFNA
CLPSLVTALAHLKVEKVVGGGGHTIVMARRIQRRFSRAGGKVVRQEGGEG
GGTRNGLAEGVESMSLVNSDEEGEENRQEEEEGGAGAERANASRRGCGAS
TRSSTSSSSSSSSSSFSSSSFSSTSKSSASSMPTT*
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mRNA from alignment at chr1:1152707..1154873+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04310.1 ID=NO01G04310.1|Name=NO01G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2167bp|location=Sequence derived from alignment at chr1:1152707..1154873+ (Nannochloropsis oceanica)
ATGGAGGAGGAAGCGCCTCTGCAGTTTTACGGCTGTGGAGTCAATTCGTT
TTTCCAACTCGGGCCTCTCATGACCGATGGCCAAGGCGGAGGAGCAAACG
ACAAGGAACACACCACAAGTATTCCCCAAGGCCAGCATCCGTCCCATCAT
TCACGAGCGCAGGCTTGTGCCCTTCATTTACCTCAGCCTCTTGCGTTTGA
TCGATTTTTGGCGGAGGAGGACGGCCCTGTAAAGGATTTGTCATGTGGCT
CGACGTTCACCGTTGCCTTGACGACCCGCGGCATTCCGTATCAGTGGGGG
ATCTTGAATGGTACGTTTGCGCGCATGAAAAGAGGAGATGGAGAGATCCG
AAGAAAATGTTGCGCACGTATAATAGAGAGACCGAATGAGAGTCTGATTT
ACTTCTAACACAGGGCGGGCTTTCCCGGAACCGACGCGGGTCTCGTTGGG
CGTGCCCTTGCGGTGCATGCAAGTGGCATGTGGCCGTAAGCATACACTAG
CATTAATGGAGGGAGGTTATATCATGAGCTGGGGTACGTGCTGCTTTTTA
TATGACGAGGATGGGCAAGAGCAAGAAATACCGGTGTGCGAGCGGCGAGC
AGAGGGAAGCCCACTCATTCCTCCCGTTTCCTCCCTCCCTCCCTCCTTCC
CTCCCTCTTTCCGTCCTTTCCAGGTGTCGGCTATTTCGGCCAGCTTGGGC
ACGGTGACGACCTTTCGTGTGACAGGCCGCGGATGGTCCACCTGTTGGAT
CCTCCCCGCTTGGGGGGAGATCATGTCGTGGCCATTGCGTGTGGGGGGTT
GCATTCCGCCGTGTCGACAGCGGGGCAGTCGGTGTATTGTTTCGGGTTTA
ACCGATACGGGCAGGTGGGGCAGGGGCAGACGAGTGATAAAATTTCTACA
CCGCGGCCAGTGAGCATGAGCATGATAGGTAGGTGCTCGAGAGAAAGAGA
GGGAGGAGGGGAGGGAGGGAGGGAGAGGAGGGAGGGAGAGGAACCGGAAG
TTGCGTGTCTTCACCATCCTTATTCGTTCTACCTCTCTCCCTCATTTCCT
CCATTCACCCTCAGGTCCTGCAAGAATACGACAATTGGCCTGCGGGCGGC
ATCACACCTCCGTTTTAACAGACAAGGGACATGTCTTCTCTTGGGGTGCA
TCTTCCTTCGGTCGTCTCGGCCTGCCGGACCCCAAAAAAGTAGTCACATT
GCCGACAGAAGTCATTTCTTTTCGCGCGTGCCCTCTCGCGGCATTGGCCT
GCGGGGACTTTCATGTGCTGGCGTTGGGGATGGATGGGAAGGTTTATGCG
TGGGGGTATGGGGCCGAAGGACAGGGGGGACTGGGCGCAACGTTGCATTT
GAGGACTCCCCGACCAGTGGAGGGATTGGAAGGGCAGCAGGTGGCGCAGG
TGGCGTGTGGAGCGTGGTGGTCGATGGTGGTGACGAGACAAGGGTACGTT
GAAGTGGACTTTTGTGCGGGGGGCGGTAGAAAGAGTAGGCGGAGGTCGTC
CGGTGGCCCGGGAGGAGAAGGACAACGGCGTCCATGTTCCTTGCTCCTTC
CTTGTGCAGTGGTCTCGTCTCATCCGCTTTCTCCCTTCCTATCTTTTTCT
ATCTCTTCCCCCCTTCTCTTCAGACGCCTGTACTCCTGGGGCTACGGTGA
CGGTGGCTGGCTTGGACTCGAGCACGCATCGGAACTCCCCTATGTGGAGC
CATGTCAACCTGTAACCAAATACGGAGCCACTTGTTCATTTGACAGCGAC
TTTAATGCTTGCTTGCCCAGCCTTGTCACAGCTTTGGCCCATCTAAAGGT
TGAAAAAGTCGTCGGCGGCGGCGGGCACACGATTGTCATGGCTAGGAGGA
TACAAAGGAGGTTCTCGAGGGCGGGAGGTAAGGTGGTGAGGCAGGAAGGT
GGGGAAGGAGGTGGGACGAGGAATGGGCTTGCAGAGGGGGTAGAGTCCAT
GTCTTTGGTGAACTCGGATGAAGAAGGCGAGGAGAATAGGCAGGAAGAAG
AGGAAGGTGGTGCAGGTGCAGAAAGGGCGAATGCCAGTCGTCGGGGGTGT
GGGGCTAGCACGAGAAGCAGCACCTCGTCAAGCTCCTCATCCTCGTCGTC
CTCCTTCTCGTCGTCTTCGTTCTCCTCCACCTCCAAATCCTCGGCATCTA
GTATGCCCACAACATGA
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Coding sequence (CDS) from alignment at chr1:1152707..1154873+

>NO01G04310.1 ID=NO01G04310.1|Name=NO01G04310.1|organism=Nannochloropsis oceanica|type=CDS|length=1608bp|location=Sequence derived from alignment at chr1:1152707..1154873+ (Nannochloropsis oceanica)
ATGGAGGAGGAAGCGCCTCTGCAGTTTTACGGCTGTGGAGTCAATTCGTT
TTTCCAACTCGGGCCTCTCATGACCGATGGCCAAGGCGGAGGAGCAAACG
ACAAGGAACACACCACAAGTATTCCCCAAGGCCAGCATCCGTCCCATCAT
TCACGAGCGCAGGCTTGTGCCCTTCATTTACCTCAGCCTCTTGCGTTTGA
TCGATTTTTGGCGGAGGAGGACGGCCCTGTAAAGGATTTGTCATGTGGCT
CGACGTTCACCGTTGCCTTGACGACCCGCGGCATTCCGTATCAGTGGGGG
ATCTTGAATGGGCGGGCTTTCCCGGAACCGACGCGGGTCTCGTTGGGCGT
GCCCTTGCGGTGCATGCAAGTGGCATGTGGCCGTAAGCATACACTAGCAT
TAATGGAGGGAGGTTATATCATGAGCTGGGGTGTCGGCTATTTCGGCCAG
CTTGGGCACGGTGACGACCTTTCGTGTGACAGGCCGCGGATGGTCCACCT
GTTGGATCCTCCCCGCTTGGGGGGAGATCATGTCGTGGCCATTGCGTGTG
GGGGGTTGCATTCCGCCGTGTCGACAGCGGGGCAGTCGGTGTATTGTTTC
GGGTTTAACCGATACGGGCAGGTGGGGCAGGGGCAGACGAGTGATAAAAT
TTCTACACCGCGGCCAGTGAGCATGAGCATGATAGGTCCTGCAAGAATAC
GACAATTGGCCTGCGGGCGGCATCACACCTCCGTTTTAACAGACAAGGGA
CATGTCTTCTCTTGGGGTGCATCTTCCTTCGGTCGTCTCGGCCTGCCGGA
CCCCAAAAAAGTAGTCACATTGCCGACAGAAGTCATTTCTTTTCGCGCGT
GCCCTCTCGCGGCATTGGCCTGCGGGGACTTTCATGTGCTGGCGTTGGGG
ATGGATGGGAAGGTTTATGCGTGGGGGTATGGGGCCGAAGGACAGGGGGG
ACTGGGCGCAACGTTGCATTTGAGGACTCCCCGACCAGTGGAGGGATTGG
AAGGGCAGCAGGTGGCGCAGGTGGCGTGTGGAGCGTGGTGGTCGATGGTG
GTGACGAGACAAGGACGCCTGTACTCCTGGGGCTACGGTGACGGTGGCTG
GCTTGGACTCGAGCACGCATCGGAACTCCCCTATGTGGAGCCATGTCAAC
CTGTAACCAAATACGGAGCCACTTGTTCATTTGACAGCGACTTTAATGCT
TGCTTGCCCAGCCTTGTCACAGCTTTGGCCCATCTAAAGGTTGAAAAAGT
CGTCGGCGGCGGCGGGCACACGATTGTCATGGCTAGGAGGATACAAAGGA
GGTTCTCGAGGGCGGGAGGTAAGGTGGTGAGGCAGGAAGGTGGGGAAGGA
GGTGGGACGAGGAATGGGCTTGCAGAGGGGGTAGAGTCCATGTCTTTGGT
GAACTCGGATGAAGAAGGCGAGGAGAATAGGCAGGAAGAAGAGGAAGGTG
GTGCAGGTGCAGAAAGGGCGAATGCCAGTCGTCGGGGGTGTGGGGCTAGC
ACGAGAAGCAGCACCTCGTCAAGCTCCTCATCCTCGTCGTCCTCCTTCTC
GTCGTCTTCGTTCTCCTCCACCTCCAAATCCTCGGCATCTAGTATGCCCA
CAACATGA
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Synonyms
Publications