NO01G04240, NO01G04240 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G04240 vs. NCBI_GenBank
Match: ETK88133.1 (hypothetical protein L915_07575 [Phytophthora parasitica]) HSP 1 Score: 65.9 bits (159), Expect = 4.600e-7 Identity = 69/298 (23.15%), Postives = 110/298 (36.91%), Query Frame = 0 Query: 115 VTWHEDFVFEGVKASQQVVVTCFMHRQSSGN-----DGCGTSC-SVVGEVQIPVGRLPEAHPIEQWYQLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRHGVSEMSHNGGSGPGGVPMTPTSLGLTTTLANLDMTQSLESTQQPLPPVAAPVLLGGGMEGPLPTSPVHAPIPT-PSNMSELAQEELPTGLVDYFCIMGPRIDPSTNLPSLTNGAILLRHPLQDKPEQPLPESPQFFCFPAGMALAYGSNPPKPAPLAYTFVIKHSGV-SSYGVCL-HFHRR 404 + W E+F E V + +V + C ++ + G +SC +G+V +P+ RLPE +EQWY L +GV P V TP +T T LPP A + SPV + S + A L +G++DY ++G ++ N SL + R+P+ D+P+ PLP ++FCFP G + ++ P+ ++ V G+ Y VCL +HRR Sbjct: 115 ICWDEEFYMEQVSSDDEVELFCLDRVRNKTHASLPLQGDISSCPGYIGKVTLPLTRLPEGQEVEQWYPLVRKESSSALRTALRVSLYFVP--------------------------NGV----------PASVSQTPERGRVTPT--------------SMLPPSPATEISS--------ASPVSNQLRVETSEAANAATIPLESGIIDYVIVVGAAVN-GDNSSSLDEAQVRFRYPITDRPDFPLPTKVEWFCFPGGPEIVTQADRPQSKIFSFVLVGGDDGLCRCYVVCLVVYHRR 353
BLAST of NO01G04240 vs. NCBI_GenBank
Match: ETK88134.1 (hypothetical protein, variant 1 [Phytophthora parasitica] >ETK88135.1 hypothetical protein, variant 2 [Phytophthora parasitica]) HSP 1 Score: 65.9 bits (159), Expect = 4.600e-7 Identity = 69/298 (23.15%), Postives = 110/298 (36.91%), Query Frame = 0 Query: 115 VTWHEDFVFEGVKASQQVVVTCFMHRQSSGN-----DGCGTSC-SVVGEVQIPVGRLPEAHPIEQWYQLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRHGVSEMSHNGGSGPGGVPMTPTSLGLTTTLANLDMTQSLESTQQPLPPVAAPVLLGGGMEGPLPTSPVHAPIPT-PSNMSELAQEELPTGLVDYFCIMGPRIDPSTNLPSLTNGAILLRHPLQDKPEQPLPESPQFFCFPAGMALAYGSNPPKPAPLAYTFVIKHSGV-SSYGVCL-HFHRR 404 + W E+F E V + +V + C ++ + G +SC +G+V +P+ RLPE +EQWY L +GV P V TP +T T LPP A + SPV + S + A L +G++DY ++G ++ N SL + R+P+ D+P+ PLP ++FCFP G + ++ P+ ++ V G+ Y VCL +HRR Sbjct: 115 ICWDEEFYMEQVSSDDEVELFCLDRVRNKTHASLPLQGDISSCPGYIGKVTLPLTRLPEGQEVEQWYPLVRKESSSALRTALRVSLYFVP--------------------------NGV----------PASVSQTPERGRVTPT--------------SMLPPSPATEISS--------ASPVSNQLRVETSEAANAATIPLESGIIDYVIVVGAAVN-GDNSSSLDEAQVRFRYPITDRPDFPLPTKVEWFCFPGGPEIVTQADRPQSKIFSFVLVGGDDGLCRCYVVCLVVYHRR 353
BLAST of NO01G04240 vs. NCBI_GenBank
Match: ETP50397.1 (hypothetical protein F442_04330 [Phytophthora parasitica P10297]) HSP 1 Score: 65.9 bits (159), Expect = 4.600e-7 Identity = 69/298 (23.15%), Postives = 110/298 (36.91%), Query Frame = 0 Query: 115 VTWHEDFVFEGVKASQQVVVTCFMHRQSSGN-----DGCGTSC-SVVGEVQIPVGRLPEAHPIEQWYQLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRHGVSEMSHNGGSGPGGVPMTPTSLGLTTTLANLDMTQSLESTQQPLPPVAAPVLLGGGMEGPLPTSPVHAPIPT-PSNMSELAQEELPTGLVDYFCIMGPRIDPSTNLPSLTNGAILLRHPLQDKPEQPLPESPQFFCFPAGMALAYGSNPPKPAPLAYTFVIKHSGV-SSYGVCL-HFHRR 404 + W E+F E V + +V + C ++ + G +SC +G+V +P+ RLPE +EQWY L +GV P V TP +T T LPP A + SPV + S + A L +G++DY ++G ++ N SL + R+P+ D+P+ PLP ++FCFP G + ++ P+ ++ V G+ Y VCL +HRR Sbjct: 115 ICWDEEFYMEQVSSDDEVELFCLDRVRNKTHASLPLQGDISSCPGYIGKVTLPLTRLPEGQEVEQWYPLVRKESSSALRTALRVSLYFVP--------------------------NGV----------PASVSQTPERGRVTPT--------------SMLPPSPATEISS--------ASPVSNQLRVETSEAANAATIPLESGIIDYVIVVGAAVN-GDNSSSLDEAQVRFRYPITDRPDFPLPTKVEWFCFPGGPEIVTQADRPQSKIFSFVLVGGDDGLCRCYVVCLVVYHRR 353
BLAST of NO01G04240 vs. NCBI_GenBank
Match: ETP50398.1 (hypothetical protein, variant 1 [Phytophthora parasitica P10297] >ETP50399.1 hypothetical protein, variant 2 [Phytophthora parasitica P10297]) HSP 1 Score: 65.9 bits (159), Expect = 4.600e-7 Identity = 69/298 (23.15%), Postives = 110/298 (36.91%), Query Frame = 0 Query: 115 VTWHEDFVFEGVKASQQVVVTCFMHRQSSGN-----DGCGTSC-SVVGEVQIPVGRLPEAHPIEQWYQLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRHGVSEMSHNGGSGPGGVPMTPTSLGLTTTLANLDMTQSLESTQQPLPPVAAPVLLGGGMEGPLPTSPVHAPIPT-PSNMSELAQEELPTGLVDYFCIMGPRIDPSTNLPSLTNGAILLRHPLQDKPEQPLPESPQFFCFPAGMALAYGSNPPKPAPLAYTFVIKHSGV-SSYGVCL-HFHRR 404 + W E+F E V + +V + C ++ + G +SC +G+V +P+ RLPE +EQWY L +GV P V TP +T T LPP A + SPV + S + A L +G++DY ++G ++ N SL + R+P+ D+P+ PLP ++FCFP G + ++ P+ ++ V G+ Y VCL +HRR Sbjct: 115 ICWDEEFYMEQVSSDDEVELFCLDRVRNKTHASLPLQGDISSCPGYIGKVTLPLTRLPEGQEVEQWYPLVRKESSSALRTALRVSLYFVP--------------------------NGV----------PASVSQTPERGRVTPT--------------SMLPPSPATEISS--------ASPVSNQLRVETSEAANAATIPLESGIIDYVIVVGAAVN-GDNSSSLDEAQVRFRYPITDRPDFPLPTKVEWFCFPGGPEIVTQADRPQSKIFSFVLVGGDDGLCRCYVVCLVVYHRR 353 The following BLAST results are available for this feature:
BLAST of NO01G04240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 14
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G04240 ID=NO01G04240|Name=NO01G04240|organism=Nannochloropsis oceanica|type=gene|length=1662bpback to top protein sequence of NO01G04240.1 >NO01G04240.1-protein ID=NO01G04240.1-protein|Name=NO01G04240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bpback to top Synonyms
Publications
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