NO01G04240.1, NO01G04240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04240.1
Unique NameNO01G04240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1662
Alignment locationchr1:1133017..1134678 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1133017..1134678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04240.1 vs.
Match: XP_009529609.1 (hypothetical protein PHYSODRAFT_507383 [Phytophthora sojae]; EGZ15860.1 hypothetical protein PHYSODRAFT_507383 [Phytophthora sojae])

HSP 1 Score: 81.3 bits (199), Expect = 1.100e-11
Identity = 72/298 (24.16%), Postives = 125/298 (41.95%), Query Frame = 0 
Query:  115 VTWHEDFVFEGVKASQQVVVTCFMHRQSSGN-----DGCGTSC-SVVGEVQIPVGRLPEAHPIEQWYQLTSSSGGGGLGGSKTSKAAIKLRLFYQVRDESLAAGAAGGGGGSTAHRHGVSEMSHNGGSGPGGVPMTPTSLGLTTTLANLDMTQSLESTQQPLPPVAAPVLLGGGMEGPLPTSPVHAPIPTPSNMSELAQEELPTGLVDYFCIMGPRIDPSTNLP-SLTNGAILLRHPLQDKPEQPLPESPQFFCFPAGMALAYGSNPPKPAPLAYTFVIKHSGV-SSYGVCL-HFHRR 404
            + W E+F  E V +S ++V+ C    +   +     +G  +SC   +G+V +P+ RLPE   +EQWY L S      L      + A+++ L +      +  G       S   R                  +TPTS+ +++    + +                              SPV  P+P+P +++  A   + +G++DY  ++G       ++P SL    +  R+PL D+ + PLP   ++FCFP G  +   +  PK    ++  V    G+  SY VCL  +HRR
Sbjct:  120 ICWDEEFYMEQVSSSDELVLFCVDRARDETHASLPLEGDVSSCPGFIGKVSLPLTRLPEGQEVEQWYPLVSKESSSSL------RTALRVSLCF------VPNGILTTRSQSPERRR-----------------VTPTSVLISSPATEISL-----------------------------ASPVTKPLPSPDSVNS-AAITVKSGVIDYVIVVGTA--AGNDVPTSLDEAQVRFRYPLTDRLDFPLPTKIEWFCFPGGPEIVTQAERPKTKLFSFVLVGGDDGLCRSYVVCLVVYHRR 356
The following BLAST results are available for this feature:
BLAST of NO01G04240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009529609.11.100e-1124.16hypothetical protein PHYSODRAFT_507383 [Phytophtho... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04240NO01G04240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04240.1NO01G04240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04240.1.cds1NO01G04240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04240.1 ID=NO01G04240.1|Name=NO01G04240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1662bp
ATGCGCGAGTCCTCATTCTACGATAATGCCACAGAGAAAGAAGGTCCAAG
CTCTTGCGGCCCTCATAGCCGCAACAGCGGCAACGCCGCAAATGGAACCT
TGGAGCTGCGCGTAATCGAAGCAGCCGATCTTGTGGAACGACGCAAGGAG
CGAAAACAACGCAGCTTCTTCGCAGGAATGACCGATTCCAATTCGGAATC
ATCGCGTAGGGAATATGCCTGGCCCTTTGTGACCATCCGGGCAGGCGAAG
ACCCGACCCGACGAACTATGCCAGGGGTCCTTTCTTTAGGTAACGAAGGA
AGCAACAGCAGCAGCGGCAGCAGCAGCAGTGGTGGTGGGATGGTGACATG
GCACGAGGACTTTGTGTTTGAGGGCGTCAAGGCCAGTCAGCAGGTGGTGG
TGACGTGCTTCATGCATCGACAATCCTCGGGAAATGATGGGTGTGGTACT
TCGTGCTCCGTTGTCGGTGAGGTCCAAATTCCTGTCGGGAGGTTACCCGA
GGCCCACCCAATTGAGCAGTGGTATCAGCTGACGTCCAGTAGCGGAGGAG
GAGGGTTAGGGGGAAGTAAAACCAGCAAGGCTGCTATCAAGCTGCGGTTG
TTCTACCAGGTGCGAGACGAAAGCCTAGCTGCAGGGGCAGCAGGAGGAGG
AGGAGGAAGTACAGCACACCGGCATGGAGTGTCGGAAATGAGCCACAACG
GTGGCAGCGGACCAGGCGGAGTCCCCATGACACCCACCTCTCTCGGTCTC
ACAACAACACTTGCCAACCTCGACATGACTCAATCCCTCGAAAGCACCCA
ACAGCCCCTGCCTCCCGTCGCCGCGCCTGTCCTCCTTGGAGGCGGCATGG
AGGGACCACTGCCTACTTCTCCCGTACACGCCCCCATCCCCACCCCCAGC
AACATGTCCGAACTCGCTCAAGAAGAGCTTCCCACGGGCCTAGTGGACTA
TTTCTGCATCATGGGTCCCCGCATTGATCCCAGCACCAACCTCCCCTCCC
TCACCAACGGTGCCATCCTCCTCCGGCACCCTCTCCAGGACAAACCCGAG
CAGCCCCTTCCCGAAAGCCCCCAATTCTTCTGTTTTCCCGCAGGCATGGC
CTTAGCTTATGGATCGAATCCTCCTAAGCCAGCACCGCTTGCTTATACCT
TCGTGATAAAGCATTCGGGTGTGTCGTCCTATGGGGTCTGTCTACACTTC
CATCGACGTTGGGATAAGGTTTCCCAAGGGGTTTTGTCGCCCTCCGTGGG
ATTGCTTGGAATCGATAACAACACCGCAAAGAGCAGCAGCAGCAGCAATA
ACAAGACCACCACTAGTTGCAGCAACCGCAACAGCAACAGCAGCAACAGC
AACAGCAACAGCAGAAGAAGCAGCAGTACGAGCAAGCAGCCCACTACCGT
GTGGGCGCCCGTGTGCCTATGTCTGTTGACACGGGTGCCCGTGGTCCAAC
CGCTCCTGACCTGGCTTGTCCACGCCTACGACAACCTCGACCTTCTACTC
CCCCCCACCTACGATGCCCTCCTCCAAGACTCCCTCCTGTCTTCCCCATC
CGTCCCCTCCCCCCTCTTTCCTCCTCCCCTGGCGCCCACCTCTCCTCCCT
CCTCCGCATGCATATCGTACAGCTCACCCTTGAAGTCCCTCTCCCCATCC
CTGGGGCTCTAG
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protein sequence of NO01G04240.1

>NO01G04240.1-protein ID=NO01G04240.1-protein|Name=NO01G04240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MRESSFYDNATEKEGPSSCGPHSRNSGNAANGTLELRVIEAADLVERRKE
RKQRSFFAGMTDSNSESSRREYAWPFVTIRAGEDPTRRTMPGVLSLGNEG
SNSSSGSSSSGGGMVTWHEDFVFEGVKASQQVVVTCFMHRQSSGNDGCGT
SCSVVGEVQIPVGRLPEAHPIEQWYQLTSSSGGGGLGGSKTSKAAIKLRL
FYQVRDESLAAGAAGGGGGSTAHRHGVSEMSHNGGSGPGGVPMTPTSLGL
TTTLANLDMTQSLESTQQPLPPVAAPVLLGGGMEGPLPTSPVHAPIPTPS
NMSELAQEELPTGLVDYFCIMGPRIDPSTNLPSLTNGAILLRHPLQDKPE
QPLPESPQFFCFPAGMALAYGSNPPKPAPLAYTFVIKHSGVSSYGVCLHF
HRRWDKVSQGVLSPSVGLLGIDNNTAKSSSSSNNKTTTSCSNRNSNSSNS
NSNSRRSSSTSKQPTTVWAPVCLCLLTRVPVVQPLLTWLVHAYDNLDLLL
PPTYDALLQDSLLSSPSVPSPLFPPPLAPTSPPSSACISYSSPLKSLSPS
LGL*
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mRNA from alignment at chr1:1133017..1134678+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04240.1 ID=NO01G04240.1|Name=NO01G04240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1662bp|location=Sequence derived from alignment at chr1:1133017..1134678+ (Nannochloropsis oceanica)
ATGCGCGAGTCCTCATTCTACGATAATGCCACAGAGAAAGAAGGTCCAAG
CTCTTGCGGCCCTCATAGCCGCAACAGCGGCAACGCCGCAAATGGAACCT
TGGAGCTGCGCGTAATCGAAGCAGCCGATCTTGTGGAACGACGCAAGGAG
CGAAAACAACGCAGCTTCTTCGCAGGAATGACCGATTCCAATTCGGAATC
ATCGCGTAGGGAATATGCCTGGCCCTTTGTGACCATCCGGGCAGGCGAAG
ACCCGACCCGACGAACTATGCCAGGGGTCCTTTCTTTAGGTAACGAAGGA
AGCAACAGCAGCAGCGGCAGCAGCAGCAGTGGTGGTGGGATGGTGACATG
GCACGAGGACTTTGTGTTTGAGGGCGTCAAGGCCAGTCAGCAGGTGGTGG
TGACGTGCTTCATGCATCGACAATCCTCGGGAAATGATGGGTGTGGTACT
TCGTGCTCCGTTGTCGGTGAGGTCCAAATTCCTGTCGGGAGGTTACCCGA
GGCCCACCCAATTGAGCAGTGGTATCAGCTGACGTCCAGTAGCGGAGGAG
GAGGGTTAGGGGGAAGTAAAACCAGCAAGGCTGCTATCAAGCTGCGGTTG
TTCTACCAGGTGCGAGACGAAAGCCTAGCTGCAGGGGCAGCAGGAGGAGG
AGGAGGAAGTACAGCACACCGGCATGGAGTGTCGGAAATGAGCCACAACG
GTGGCAGCGGACCAGGCGGAGTCCCCATGACACCCACCTCTCTCGGTCTC
ACAACAACACTTGCCAACCTCGACATGACTCAATCCCTCGAAAGCACCCA
ACAGCCCCTGCCTCCCGTCGCCGCGCCTGTCCTCCTTGGAGGCGGCATGG
AGGGACCACTGCCTACTTCTCCCGTACACGCCCCCATCCCCACCCCCAGC
AACATGTCCGAACTCGCTCAAGAAGAGCTTCCCACGGGCCTAGTGGACTA
TTTCTGCATCATGGGTCCCCGCATTGATCCCAGCACCAACCTCCCCTCCC
TCACCAACGGTGCCATCCTCCTCCGGCACCCTCTCCAGGACAAACCCGAG
CAGCCCCTTCCCGAAAGCCCCCAATTCTTCTGTTTTCCCGCAGGCATGGC
CTTAGCTTATGGATCGAATCCTCCTAAGCCAGCACCGCTTGCTTATACCT
TCGTGATAAAGCATTCGGGTGTGTCGTCCTATGGGGTCTGTCTACACTTC
CATCGACGTTGGGATAAGGTTTCCCAAGGGGTTTTGTCGCCCTCCGTGGG
ATTGCTTGGAATCGATAACAACACCGCAAAGAGCAGCAGCAGCAGCAATA
ACAAGACCACCACTAGTTGCAGCAACCGCAACAGCAACAGCAGCAACAGC
AACAGCAACAGCAGAAGAAGCAGCAGTACGAGCAAGCAGCCCACTACCGT
GTGGGCGCCCGTGTGCCTATGTCTGTTGACACGGGTGCCCGTGGTCCAAC
CGCTCCTGACCTGGCTTGTCCACGCCTACGACAACCTCGACCTTCTACTC
CCCCCCACCTACGATGCCCTCCTCCAAGACTCCCTCCTGTCTTCCCCATC
CGTCCCCTCCCCCCTCTTTCCTCCTCCCCTGGCGCCCACCTCTCCTCCCT
CCTCCGCATGCATATCGTACAGCTCACCCTTGAAGTCCCTCTCCCCATCC
CTGGGGCTCTAG
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Coding sequence (CDS) from alignment at chr1:1133017..1134678+

>NO01G04240.1 ID=NO01G04240.1|Name=NO01G04240.1|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at chr1:1133017..1134678+ (Nannochloropsis oceanica)
ATGCGCGAGTCCTCATTCTACGATAATGCCACAGAGAAAGAAGGTCCAAG
CTCTTGCGGCCCTCATAGCCGCAACAGCGGCAACGCCGCAAATGGAACCT
TGGAGCTGCGCGTAATCGAAGCAGCCGATCTTGTGGAACGACGCAAGGAG
CGAAAACAACGCAGCTTCTTCGCAGGAATGACCGATTCCAATTCGGAATC
ATCGCGTAGGGAATATGCCTGGCCCTTTGTGACCATCCGGGCAGGCGAAG
ACCCGACCCGACGAACTATGCCAGGGGTCCTTTCTTTAGGTAACGAAGGA
AGCAACAGCAGCAGCGGCAGCAGCAGCAGTGGTGGTGGGATGGTGACATG
GCACGAGGACTTTGTGTTTGAGGGCGTCAAGGCCAGTCAGCAGGTGGTGG
TGACGTGCTTCATGCATCGACAATCCTCGGGAAATGATGGGTGTGGTACT
TCGTGCTCCGTTGTCGGTGAGGTCCAAATTCCTGTCGGGAGGTTACCCGA
GGCCCACCCAATTGAGCAGTGGTATCAGCTGACGTCCAGTAGCGGAGGAG
GAGGGTTAGGGGGAAGTAAAACCAGCAAGGCTGCTATCAAGCTGCGGTTG
TTCTACCAGGTGCGAGACGAAAGCCTAGCTGCAGGGGCAGCAGGAGGAGG
AGGAGGAAGTACAGCACACCGGCATGGAGTGTCGGAAATGAGCCACAACG
GTGGCAGCGGACCAGGCGGAGTCCCCATGACACCCACCTCTCTCGGTCTC
ACAACAACACTTGCCAACCTCGACATGACTCAATCCCTCGAAAGCACCCA
ACAGCCCCTGCCTCCCGTCGCCGCGCCTGTCCTCCTTGGAGGCGGCATGG
AGGGACCACTGCCTACTTCTCCCGTACACGCCCCCATCCCCACCCCCAGC
AACATGTCCGAACTCGCTCAAGAAGAGCTTCCCACGGGCCTAGTGGACTA
TTTCTGCATCATGGGTCCCCGCATTGATCCCAGCACCAACCTCCCCTCCC
TCACCAACGGTGCCATCCTCCTCCGGCACCCTCTCCAGGACAAACCCGAG
CAGCCCCTTCCCGAAAGCCCCCAATTCTTCTGTTTTCCCGCAGGCATGGC
CTTAGCTTATGGATCGAATCCTCCTAAGCCAGCACCGCTTGCTTATACCT
TCGTGATAAAGCATTCGGGTGTGTCGTCCTATGGGGTCTGTCTACACTTC
CATCGACGTTGGGATAAGGTTTCCCAAGGGGTTTTGTCGCCCTCCGTGGG
ATTGCTTGGAATCGATAACAACACCGCAAAGAGCAGCAGCAGCAGCAATA
ACAAGACCACCACTAGTTGCAGCAACCGCAACAGCAACAGCAGCAACAGC
AACAGCAACAGCAGAAGAAGCAGCAGTACGAGCAAGCAGCCCACTACCGT
GTGGGCGCCCGTGTGCCTATGTCTGTTGACACGGGTGCCCGTGGTCCAAC
CGCTCCTGACCTGGCTTGTCCACGCCTACGACAACCTCGACCTTCTACTC
CCCCCCACCTACGATGCCCTCCTCCAAGACTCCCTCCTGTCTTCCCCATC
CGTCCCCTCCCCCCTCTTTCCTCCTCCCCTGGCGCCCACCTCTCCTCCCT
CCTCCGCATGCATATCGTACAGCTCACCCTTGAAGTCCCTCTCCCCATCC
CTGGGGCTCTAG
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Synonyms
Publications