NO01G04150, NO01G04150 (gene) Nannochloropsis oceanica

Overview
NameNO01G04150
Unique NameNO01G04150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2777
Alignment locationchr1:1109305..1112081 -

Link to JBrowse

Properties
Property NameValue
DescriptionH/ACA ribonucleoprotein complex subunit 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1109305..1112081 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
GO:0006396RNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
GO:0003824catalytic activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR015947PUA-like_domain
IPR004802tRNA_PsdUridine_synth_B_fam
IPR002501PsdUridine_synth
IPR032819TruB_C
IPR012960Dyskerin-like
IPR002478PUA
Homology
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BLAST of NO01G04150 vs. NCBI_GenBank
Match: XP_005854117.1 (H/ACA ribonucleoprotein complex subunit 4 [Nannochloropsis gaditana CCMP526] >EKU22238.1 H/ACA ribonucleoprotein complex subunit 4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 790.0 bits (2039), Expect = 4.500e-225
Identity = 394/410 (96.10%), Postives = 405/410 (98.78%), Query Frame = 0 
Query:   36 MGKKDKK-AAASSGDDESATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGHGKLMRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLVEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYSYDTYKDETYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNADTPKEYLEAFEGK 445
            MGKKDKK AAA++G+  +ATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEG  KL+RAVETLTGALFQRPPLIAAVKRQLRIRTIYESKL+EYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQY+YDTYKDE+YLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNA+TP++YLEAFEGK
Sbjct:    1 MGKKDKKAAAAANGEAAAATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFEGK 410
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BLAST of NO01G04150 vs. NCBI_GenBank
Match: EWM29366.1 (h aca ribonucleoprotein complex subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 790.0 bits (2039), Expect = 4.500e-225
Identity = 394/410 (96.10%), Postives = 405/410 (98.78%), Query Frame = 0 
Query:   36 MGKKDKK-AAASSGDDESATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGHGKLMRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLVEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYSYDTYKDETYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNADTPKEYLEAFEGK 445
            MGKKDKK AAA++G+  +ATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEG  KL+RAVETLTGALFQRPPLIAAVKRQLRIRTIYESKL+EYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQY+YDTYKDE+YLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNA+TP++YLEAFEGK
Sbjct:   28 MGKKDKKAAAAANGEAAAATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFEGK 437
[Close]
BLAST of NO01G04150 vs. NCBI_GenBank
Match: XP_002291351.1 (hypothetical protein THAPSDRAFT_508 [Thalassiosira pseudonana CCMP1335] >EED91458.1 hypothetical protein THAPSDRAFT_508 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 647.5 bits (1669), Expect = 3.600e-182
Identity = 313/381 (82.15%), Postives = 348/381 (91.34%), Query Frame = 0 
Query:   62 MIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGHGKLMRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLVEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYSYDTYKDETYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNADTPKEYLEAFE 443
            MI P + TPKLDTS WPLLLKNY  LH+RT+ YTPIP GSSPL R LK+++  GVINLDKPANPSSHEVV+WIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQ AGKEYVGVVRLH A+E   +L RAVETLTGALFQRPPLI+AVKRQLRIRTIYESKL+EYDEKR+LG+FWVSCEAGTY+RTLCVHLGLLVGTGGHMQELRRVRSGVL END+L+TMHDV+DAQ+ YDT KDE YLRR V+PLE L  N KR+VVKDSAVNAICYGA+LMIPGLLRFAD I++N EVV++TTKGEAIAVGIAQMTTAVMATCDHG+VAKIKRV+MERDTYPRRWGLGP+A +KKGL+KEGKLDKHG+PN  TPK++LE ++
Sbjct:    1 MIAPSSHTPKLDTSAWPLLLKNYSDLHIRTSHYTPIPCGSSPLARNLKDHISSGVINLDKPANPSSHEVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGVVRLHSALEDTKQLHRAVETLTGALFQRPPLISAVKRQLRIRTIYESKLIEYDEKRNLGIFWVSCEAGTYVRTLCVHLGLLVGTGGHMQELRRVRSGVLDENDNLVTMHDVMDAQHVYDTTKDEKYLRRVVMPLETLLTNYKRIVVKDSAVNAICYGAKLMIPGLLRFADDIDINQEVVLMTTKGEAIAVGIAQMTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGPMAQRKKGLIKEGKLDKHGKPNEKTPKDFLEGYK 381
[Close]
BLAST of NO01G04150 vs. NCBI_GenBank
Match: EJK48998.1 (hypothetical protein THAOC_32164 [Thalassiosira oceanica])

HSP 1 Score: 637.5 bits (1643), Expect = 3.700e-179
Identity = 310/402 (77.11%), Postives = 357/402 (88.81%), Query Frame = 0 
Query:   41 KKAAASSGDDESATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGHGKLMRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLVEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYSYDTYKDETYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNADTPKEYLEAFE 443
            KK  A +G+ E + G    + MI+P   TPKLDTS WPLLLKNY  LH+RT+ YTPIP GSSPL R LK+++  GVINLDKPANPSSHEVV+WIKRILRVEKTGHSGTLDPKVTGCLIVC+DRATRLVKAQQ AGKEY+GVVRLH AI+ + KL RAVETLTGALFQRPPLI+AVKRQLRIRTIYESKL+EYD++R+LG+FWVSCEAGTY+RTLCVHLGLLVGTGGHMQELRRVRSGV+ E D+L+TMHDV+DAQ+ +DT KDE YLRR V+PLE+L  N KRVVVKDSAVNAICYGA+LMIPGLLRFAD I++N EVV++TTKGEAIAVGIAQMTTAVMATCDHG+VAKIKRV+MERDTYPRRWGLG +AT+KK L+KEGKLD++G+ N  TPK++LE ++
Sbjct:   38 KKRKAENGEAEDSGG---AQPMIEPSKHTPKLDTSNWPLLLKNYSDLHIRTSHYTPIPCGSSPLARNLKDHISSGVINLDKPANPSSHEVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKAQQSAGKEYIGVVRLHSAIDDNKKLHRAVETLTGALFQRPPLISAVKRQLRIRTIYESKLIEYDDQRNLGIFWVSCEAGTYVRTLCVHLGLLVGTGGHMQELRRVRSGVMAEKDNLVTMHDVMDAQHVFDTTKDEKYLRRVVMPLEVLLTNYKRVVVKDSAVNAICYGAKLMIPGLLRFADDIDINQEVVLMTTKGEAIAVGIAQMTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGAMATRKKALIKEGKLDRYGKVNEKTPKDFLEGYK 436
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BLAST of NO01G04150 vs. NCBI_GenBank
Match: XP_005832113.1 (hypothetical protein GUITHDRAFT_71484 [Guillardia theta CCMP2712] >EKX45133.1 hypothetical protein GUITHDRAFT_71484 [Guillardia theta CCMP2712])

HSP 1 Score: 630.6 bits (1625), Expect = 4.500e-177
Identity = 301/407 (73.96%), Postives = 352/407 (86.49%), Query Frame = 0 
Query:   36 MGKKDKKAAASSGDDESATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGHGKLMRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLVEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYSYDTYKDETYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNADTPKEYLEAFE 443
            MGKKDK        ++S     S ++ IKPE  TPK+DTS WPLLLKNYD+L++RT  YTPIP G SPLKRP+ EY+RYGVINLDKPANPSSHEVVAWI+RILRV+KTGHSGTLDPKVTGCLIVC++RATRLVK+QQGAGKEYV + RLHGAIE   K  +A+E L GA+FQRPPLI+AVKRQLRIRTIYESK++E+D++R+LGVFW+SCEAGTY+RT+CVH+GLL+G GGHMQELRRVRSG LTE+D+LMTMHDVLDAQ+ YDTYKDE+YLRR +LPLE L    KRVVVKDSAVNAICYGA+LMIPGLLRF DGIE+  E+VM+TTKGEAI +GIAQMTTAVMATCDHG+VAKIKRV+MERDTYPRRWGLGP A  KK ++ +GKLDK+GRPNA+TP  +   ++
Sbjct:    1 MGKKDK-------SEKSEKKKESLDYTIKPEDVTPKIDTSNWPLLLKNYDKLNIRTGHYTPIPNGCSPLKRPILEYVRYGVINLDKPANPSSHEVVAWIRRILRVDKTGHSGTLDPKVTGCLIVCVERATRLVKSQQGAGKEYVSIARLHGAIESENKFAKALEKLKGAIFQRPPLISAVKRQLRIRTIYESKMIEFDKERNLGVFWISCEAGTYVRTMCVHIGLLLGVGGHMQELRRVRSGALTEHDNLMTMHDVLDAQWMYDTYKDESYLRRVILPLERLLTGYKRVVVKDSAVNAICYGAKLMIPGLLRFEDGIEIGTEIVMITTKGEAICLGIAQMTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGPQAKAKKQMIIDGKLDKYGRPNANTPSNWQNLYK 400
[Close]
BLAST of NO01G04150 vs. NCBI_GenBank
Match: GAY03286.1 (H/ACA ribonucleoprotein complex subunit 4 [Pythium insidiosum])

HSP 1 Score: 623.6 bits (1607), Expect = 5.600e-175
Identity = 307/402 (76.37%), Postives = 345/402 (85.82%), Query Frame = 0 
Query:   38 KKDKKAAASSGDDESATGLPST---EFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGHGKLMRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLVEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYSYDTYKDETYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNADTPKE 437
            KK KK       D+SA   P +   + +I PE   PKLDTS WPLLLKNY+QL+VRT  YTPIP  +SPLKR L++Y+RYGVINLDKPANPSSHEVVAWI+RILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYV VVRLH AIEG  KL RA+ETLTGALFQRPPLI+AVKRQLRIRTIY+SKL+EYD+ RHLGVFWVSCEAGTYIRTLCVHLGL++G GGHMQELRRVRSGVL E D ++TMHDVLDAQY YDTYKDE+YLRR V PLE+L    KR+VVKDS+VNAICYGA+ M+PGLLRFAD I++ +EVV++TTKGEAIAVGIAQMTTAVMATCDHG+VAKIKRV+MERDTYPRRWGLGP+A K KGL+K+GK+      N  TP +
Sbjct:    8 KKAKKXXXXQSVDDSAAVAPQSTDGKDLIAPEAHAPKLDTSKWPLLLKNYNQLNVRTGHYTPIPTSTSPLKRNLQDYIRYGVINLDKPANPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVAVVRLHSAIEGQAKLARAIETLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDQDRHLGVFWVSCEAGTYIRTLCVHLGLVLGVGGHMQELRRVRSGVLGEQDSMVTMHDVLDAQYQYDTYKDESYLRRIVRPLEVLLTTYKRIVVKDSSVNAICYGAKFMVPGLLRFADDIDIGEEVVLMTTKGEAIAVGIAQMTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGPMAQKVKGLVKDGKMGXXXXXNDSTPSD 409
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BLAST of NO01G04150 vs. NCBI_GenBank
Match: XP_009534562.1 (hypothetical protein PHYSODRAFT_258871 [Phytophthora sojae] >EGZ09701.1 hypothetical protein PHYSODRAFT_258871 [Phytophthora sojae])

HSP 1 Score: 623.2 bits (1606), Expect = 7.300e-175
Identity = 308/404 (76.24%), Postives = 346/404 (85.64%), Query Frame = 0 
Query:   38 KKDKKAAASSGDDESATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGHGKLMRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLVEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYSYDTYKDETYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNADTPKEYLEAF 442
            KK  KAA + G D           +I PE+ TP LDTS WPLLLKNY+QL+VRT  YTPI   SSPLKR L +Y+RYGVINLDKPANPSSHEVVAWI+RILRVEKTGHSGTLDPKVTGCLIVC+DRATRLVKAQQGAGKEYV VVRLH AIEG  KL RA+ETLTGALFQRPPLI+AVKRQLRIRTIY SKL+EYDE RHLG+F VSCEAGTYIRTLCVHLGL++G GGHMQELRRVRSGVL END ++TMHDVLDAQ+ YDTYKDE+YLRR V PLE+L    KR+VVKDS+VNAICYGA+ MIPGLLRFAD I++ +EVV++TTKGEAIAV IAQMTTAVMATCDHG+VAKIKRV+MERDTYPRRWGLGP+A K KGL+KEGK+ K+G+ N +TP +  E +
Sbjct:   12 KKKLKAANAEGKD-----------LIAPESHTPALDTSKWPLLLKNYNQLNVRTGHYTPIACSSSPLKRNLNDYVRYGVINLDKPANPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKAQQGAGKEYVAVVRLHSAIEGQAKLARAIETLTGALFQRPPLISAVKRQLRIRTIYSSKLIEYDEDRHLGIFHVSCEAGTYIRTLCVHLGLVLGVGGHMQELRRVRSGVLGENDSMVTMHDVLDAQFQYDTYKDESYLRRIVRPLEVLLTTYKRIVVKDSSVNAICYGAKFMIPGLLRFADDIDIGEEVVLMTTKGEAIAVAIAQMTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGPMAQKVKGLVKEGKIGKYGKVNENTPADVSELY 404
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BLAST of NO01G04150 vs. NCBI_GenBank
Match: XP_002180965.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47617.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 623.2 bits (1606), Expect = 7.300e-175
Identity = 307/408 (75.25%), Postives = 351/408 (86.03%), Query Frame = 0 
Query:   36 MGKKDKKAAASSGDDESATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGHGKLMRAVE-TLTGALFQRPPLIAAVKRQLRIRTIYESKLVEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYSYDTYKDETYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNADTPKEYLEAFE 443
            M    K A     DD SA    S   MI P + TPKLDTS WPLLLKNY +LHVRTA YTP+P GSSPL R L+++L+YGVINLDKPANPSSHEVV+WIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQ AGKEY+GVVRLH A++   +L RA+E TLTGALFQRPPLI+AVKRQLRIRTIY+SKL+E+D +R+LGVFWV CEAGTYIRTLCVH GLLVGTGGHMQELRRV+SGVL E D+L+T+HDV+DAQ+ YDT KDETYLRR V+PLE L  N KR+VVKDSAVNAICYGA+LMIPGLLRFAD IE+N EVV++TTKGEAIAV +AQMTTAVMAT DHG+VAKIKRV+MERD YPRRWGLGP+A +KK ++KEGKLDKHG+PN  TP  +L++++
Sbjct:    1 MPSATKSAKKRKADDGSAVAETSAGPMITPSSHTPKLDTSKWPLLLKNYHELHVRTAHYTPLPTGSSPLARTLEQHLQYGVINLDKPANPSSHEVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYIGVVRLHAALDDPKQLTRAIETTLTGALFQRPPLISAVKRQLRIRTIYDSKLLEFDGERNLGVFWVKCEAGTYIRTLCVHAGLLVGTGGHMQELRRVKSGVLGEEDNLVTLHDVMDAQHVYDTTKDETYLRRVVMPLETLLTNYKRIVVKDSAVNAICYGAKLMIPGLLRFADDIELNQEVVLMTTKGEAIAVALAQMTTAVMATVDHGVVAKIKRVIMERDVYPRRWGLGPMAQRKKSMIKEGKLDKHGKPNEKTPSNFLDSYK 408
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BLAST of NO01G04150 vs. NCBI_GenBank
Match: OEU14656.1 (Dkc1 protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 622.9 bits (1605), Expect = 9.500e-175
Identity = 307/408 (75.25%), Postives = 350/408 (85.78%), Query Frame = 0 
Query:   36 MGKKDKKAAASSGDDESATGLPSTE-FMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGHGKLMRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLVEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYSYDTYKDETYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNADTPKEYLEAFE 443
            MG   KK      DD +A  + S+   MI P  +TPKLDTS WPLLLKNY QLHVRT+ YTP+P GSSPL RPL  +L YGVINLDKPANPSSHEVV+WIK+ILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVK+QQ AGKEYV V RLH A +   K+ R+VETLTGALFQRPPLI+AVKRQLRIRTIYESKL+EYDE+R+LGV W+SCEAGTY+RTLCVHLGLL G GGHMQELRRVRSG L E D+L+TMHDVLDAQ+ YDT KDETYLRR V+PLE+L    KR+VVKDSAVNAICYGA+ MIPGLLRFADGIE+NDEVV++TTKGEAIAV IAQMTTAVMAT DHG+VAKIKRV+MERD YPRRWGLGP+A +KK ++K+GKLDKHG+PN  TP ++L++++
Sbjct:    1 MGSSTKK---RKNDDGTAVAVASSSTSMIAPSNSTPKLDTSNWPLLLKNYHQLHVRTSHYTPLPCGSSPLARPLNHHLSYGVINLDKPANPSSHEVVSWIKKILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAVARLHSACD-VAKVQRSVETLTGALFQRPPLISAVKRQLRIRTIYESKLLEYDEERNLGVLWLSCEAGTYVRTLCVHLGLLTGAGGHMQELRRVRSGALAEKDNLVTMHDVLDAQHVYDTTKDETYLRRVVMPLEVLLTKYKRIVVKDSAVNAICYGAKFMIPGLLRFADGIELNDEVVLMTTKGEAIAVAIAQMTTAVMATVDHGVVAKIKRVIMERDVYPRRWGLGPMAQRKKSMIKDGKLDKHGKPNEKTPTDFLKSYK 404
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BLAST of NO01G04150 vs. NCBI_GenBank
Match: PIA13587.1 (putative rRNA pseudouridine synthase [Coemansia reversa NRRL 1564])

HSP 1 Score: 622.9 bits (1605), Expect = 9.500e-175
Identity = 296/384 (77.08%), Postives = 344/384 (89.58%), Query Frame = 0 
Query:   58 STEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGHGKLMRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLVEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYSYDTYKDETYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNADTPKEYLEAF 442
            +T+F IKPE +   +DTS WP LLKNYD+LHVRT  YTPIPMGS+PLKR L EY+RYGVINLDKPANPSSHEVVAWI+RILRV+KTGHSGTLDPKVTGCLIVC+DRATRLVK+QQ AGKEYV VVRLH A+E    L +AVETLTGALFQRPPLI+AVKRQLR+RTIYESKL+E+D +RHLGVFWVSCEAGTY+RTLCVHLGLL+G GGHMQELRRVRSG LTEND+L+TMHDVLDAQ++YD  KDE+YLRR V PLE L    KRVVVKDS++NAICYGA+LM+PGLLRF DGIEV++E+V++TTKGEA+A+ IAQMTTA+MATCDHG+VAKIKRV+MERDTYPR+WGLGPVA  KK ++K+GKLDK GR N +TPK++ +A+
Sbjct:    4 ATDFRIKPEASGASIDTSQWPYLLKNYDKLHVRTGHYTPIPMGSTPLKRSLSEYIRYGVINLDKPANPSSHEVVAWIRRILRVDKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQSAGKEYVCVVRLHDALENEMGLAKAVETLTGALFQRPPLISAVKRQLRVRTIYESKLLEFDNERHLGVFWVSCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGALTENDNLVTMHDVLDAQWTYDNTKDESYLRRVVRPLEWLLTGYKRVVVKDSSINAICYGAKLMVPGLLRFEDGIEVDEEIVLMTTKGEAVAIAIAQMTTAIMATCDHGVVAKIKRVIMERDTYPRKWGLGPVAQMKKKMIKDGKLDKFGRKNEETPKDWQKAY 387
The following BLAST results are available for this feature:
BLAST of NO01G04150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854117.14.500e-22596.10H/ACA ribonucleoprotein complex subunit 4 [Nannoch... [more]
EWM29366.14.500e-22596.10h aca ribonucleoprotein complex subunit 4 [Nannoch... [more]
XP_002291351.13.600e-18282.15hypothetical protein THAPSDRAFT_508 [Thalassiosira... [more]
EJK48998.13.700e-17977.11hypothetical protein THAOC_32164 [Thalassiosira oc... [more]
XP_005832113.14.500e-17773.96hypothetical protein GUITHDRAFT_71484 [Guillardia ... [more]
GAY03286.15.600e-17576.37H/ACA ribonucleoprotein complex subunit 4 [Pythium... [more]
XP_009534562.17.300e-17576.24hypothetical protein PHYSODRAFT_258871 [Phytophtho... [more]
XP_002180965.17.300e-17575.25predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU14656.19.500e-17575.25Dkc1 protein [Fragilariopsis cylindrus CCMP1102][more]
PIA13587.19.500e-17577.08putative rRNA pseudouridine synthase [Coemansia re... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007873NSK007873Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04150.1NO01G04150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577304gene_430Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100028g51gene1282Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04150.1NO01G04150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04150 ID=NO01G04150|Name=NO01G04150|organism=Nannochloropsis oceanica|type=gene|length=2777bp
CACATGTGAGACTCGGGTGAAGCAATGGCCTGCAAGGATCCGGGCTTTAC
ACCATTTGCCTCGGCTAATCAGTCTCCTCGCACTATAGGCTTGGTAGCAT
GTCGTCATTGGGGTTTTTAGTGAGCCTCTTGTTGTGTTTAAGGGTGGCGG
CTTCCGTATTACCATGCTATTCACAATGACATGGGATGATGGATACTCCA
CACGCCTCTATCCTCTTAATTTCTGCTTGATAAGGCCATAGACAAGCCGC
CCGCCAACCCCTAAGCTGACATGCCGCATAAAGCGTCGCAATTACAGACA
ACTAGAACAGACGCACGTCCATGAGCGACCTGGCTGGGGCAGCTCAATTT
CTGTCCCGCGTCCCATCACCCACCATTCCTCTGCCCTCTCCCACCCTTCT
GACCTCAACACATAGCAGGCCTATCATGGGCAAAAAGGACAAGAAGGCCG
CGGCCTCCAGTGGCGACGATGAAAGTGCCACCGGGTTGCCCTCGACCGAG
TTTATGATCAAGCCCGAGACCGCCACACCTAAGCTGGACACATCCACCTG
GCCTCTGCTCCTCAAGAACTACGATCAGCTTCACGTCCGGACCGCGCGCT
ATACGCCCATTCCCATGGGTTCTTCTCCCCTGAAGCGCCCCTTAAAAGAA
TATCTGCGGTATGGTGTCATCAACTTGGACAAGCCGGCCAACCCATCGTC
TCACGAGGTGGTGGCGTGGATCAAGCGGATTCTCCGGGTGGAAAAAACGG
GGCACTCGGGCACGCTCGACCCCAAGGTAACAGGCTGCCTAATCGTTTGC
ATTGACCGGGCCACCCGCCTAGTCAAGGCCCAACAGGGGGCGGGGAAAGA
GTACGTGGGCGTGGTTCGTTTGCACGGGGCGATTGAAGGACACGGAAAGT
TGATGCGCGCGGTGGAGACGTTGACGGGGGCTTTGTTCCAGCGTCCACCT
CTGATTGCCGCCGTCAAGCGTCAGCTGCGCATTCGAACCATCTACGAGAG
TAAACTGGTAGAGTATGATGAGAAGAGGCATTTGGGAGTGTTTTGGGTGA
GTTGCGAGGCAGGGACGTACATCCGGACGTTGTGTGTGCATTTGGGGTTG
TTGGTGGGGACGGGAGGGCACATGCAGGAATTGCGGCGGGTAAGGTCTGG
GGTGTTGACTGAGAACGACCACTTGATGACGATGCATGACGTGTTAGACG
CACAGTATTCGTATGATACGTATAAAGATGAGACTTACCTGCGCCGGGCG
GTGTTGCCGTTGGAGATCTTGTTTGCGAATACGAAGAGGGTGGTGGTGAA
GGATAGTGCGGTCAATGCCATCTGCTATGGGGCCCGACTGATGATCCCAG
GCTTGTTGCGGTTCGCGGATGGTATTGAAGTAAACGATGAGGTGGTGATG
GTGACGACGAAGGGGGAGGCAATTGCAGTGGGGATAGCCCAGATGACGAC
GGCTGTAATGGCCACGTGCGACCATGGCATGGTGGCGAAAATCAAGCGAG
TGGTGATGGAACGAGATACCTACCCCCGAAGATGGGGGCTGGGACCAGTG
GCAACCAAGAAGAAGGGTTTGATGAAGGAGGGGAAGTTGGACAAGCACGG
ACGGCCGAACGCGGATACGCCCAAGGAGTATCTGGAAGCTTTTGAGGGCA
AGGGAGGACCGGCGGCAGCGGCAGGGGCAGGAGCAGGAGGAGGTGAAGTT
GTGAAGAAGGAGAAGAAGAAGGAGAAGAAAGAAAAGAAGGAGGTGGAGGA
TGTGGCAATATCGGTGGCAGATGGCAGCGGAGGGGAGGAGAATGGCGAGG
GAAAGAAGAAGAAAAAGAAGGACAAGAAGGAGAAAAAGCGACCGGCGGAG
GAAGTGCCGTCATCTCCCGAGGCGGCAGAGGAGAAGAAAAAGAAGAAGAA
GAAGAGCAAGGGGGAGTAAACGAGGAGAGACTCAGAGGTCGGGGTGGAGG
GACAGCGATGAAACAATACGATGTGACGCGTGTACGTTTGCTTTGCGCGG
GGTGTGTGTGTATGTATGCGTTTGGAATACTATCAAGGAAAGAAGCGAAT
GGGGAGGTAACATCCCGCCCGCTACCCACTGCCTGCCGCTCGCCGGCCTG
CGTGCATAGCCCCACGAAGATTAAGGAAAGATAAGCGACAGCAATGAGAA
ACATTGGCGGTGATAATTTGCCTTTGGCTTCTTTCAAGAGAAGACGCTTC
TGTTGGGCATTCCAAAGAAGTGGGTCGAGACCTCCTCTCACGCCAAAACC
ATCCTTGTCATGCAATCAAACACGTTCCTCTAATCAATTTCTCAACGTGT
GCACATGTAAACATGACTAGGAAGCGCATAACAAAGAAACAACAGCTTAC
AGCACCAAGGGAGAAAAATGGTAATTGCTCACCAATAATGCCCGATTTTC
GACTCATATTTGACTCGCAAGTTTTTCCTCTACCAATAAATTCATAAAAG
TACCAAAATCCCAAAGAATTACCTCAATTAGCTCTTTTCCACCGAACAAG
GTTTCTCCATTGAGGAACGTGTACCGGGCCCTCCCAGCCTCAATCAATCC
TTGAAGCAGAAGCAGACCGACCGACCGACAGACGACACCTCGGAAATTTA
GCAGTAAATTAATAGATTAAACCACGCGCAATGACTATTTCGGTCGATAA
GGATATGAATGTGTTGTTCATTTCTTATCTTGGGTCGATATCACCTGGGA
AATACACCCTTTTCCCGCACACTGTTCCTCGTGATGCGTTTCACTTGGGT
TTTCACTTGAAATTTACTCGAATTTAC
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protein sequence of NO01G04150.1

>NO01G04150.1-protein ID=NO01G04150.1-protein|Name=NO01G04150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MSDLAGAAQFLSRVPSPTIPLPSPTLLTSTHSRPIMGKKDKKAAASSGDD
ESATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMG
SSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLD
PKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGHGKLMRAVET
LTGALFQRPPLIAAVKRQLRIRTIYESKLVEYDEKRHLGVFWVSCEAGTY
IRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYSYDT
YKDETYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFAD
GIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDT
YPRRWGLGPVATKKKGLMKEGKLDKHGRPNADTPKEYLEAFEGKGGPAAA
AGAGAGGGEVVKKEKKKEKKEKKEVEDVAISVADGSGGEENGEGKKKKKK
DKKEKKRPAEEVPSSPEAAEEKKKKKKKSKGE*
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Synonyms
Publications