jgi.p|Nanoce1779_2|577304, gene_430 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577304
Unique Namegene_430
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_3:1058560..1063613 -

Link to JBrowse

Properties
Property NameValue
TranscriptId577390
ProteinId577304
Product namePseudouridine synthase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1058560..1063613 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0042299lupeol synthase activity
GO:0042300beta-amyrin synthase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0031119tRNA pseudouridine synthesis
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL047ncniL047Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04150NO01G04150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577304mRNA_430-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577304mRNA_430Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|577304

>mRNA_430-protein ID=mRNA_430-protein|Name=jgi.p|Nanoce1779_2|577304|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MGKKDKKAAASCGDDESATGLPSTEFMIKPETATPKLDTSTWPLLLKNYD
QLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIK
RILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLH
GAIEGHGKLMRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLVEYDEK
RHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHL
MTMHDVLDAQYSYDTYKDETYLRRAVLPLEILFANTKRVVVKDSAVNAIC
YGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDH
GMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNADTPK
EYLEAFEGKGGPAAAAGAGAGGGEVVKKEKKKEKKEKKEVEDVAISVADG
SGGEENGEGKKKKKKDKKEKKRPAEEVPSSPEAAEEKKKKKKKSKGE*
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Synonyms
Publications