NO01G03940, NO01G03940 (gene) Nannochloropsis oceanica

Overview
NameNO01G03940
Unique NameNO01G03940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1473
Alignment locationchr1:1050792..1052264 -

Link to JBrowse

Properties
Property NameValue
DescriptionPyruvate dehydrogenase E1 component subunit alpha
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1050792..1052264 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016624oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR029061THDP-binding
IPR001017DH_E1
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Homology
BLAST of NO01G03940 vs. NCBI_GenBank
Match: EWM29330.1 (pyruvate dehydrogenase e1 component alpha subunit [Nannochloropsis gaditana])

HSP 1 Score: 729.2 bits (1881), Expect = 7.300e-207
Identity = 360/410 (87.80%), Postives = 376/410 (91.71%), Query Frame = 0
Query:    6 MFTMRCGLRVLGHKVCSGSSVTAAAAARGMAPKAAFSSAASITVDLSKAFDLHNLEAAPPTEATATKEELVEYLRLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVAVGVNSALDFNDSWITSYRCHCVALSRGSTVEQIISELFGFKEGTVKGKGGSMHFYSKKHNFYGGQGIVGAQVPVGTGLAFANKYNTPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIERSSSNTRYYTMGNKIPGIRMDGMNVVAVREGMKFVKDFVGSGNGPIFVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLVDHSMLSSDGVKEMEKGIRKEVQDALKKAKAGSQPPLEELFRDIYSADEKGTNQYPPYIRMPDRTKSREFA 416
            M TMR GL++LG K    S            P AAFSS +SITVDLSKAFD HNL++APPT ATATKEELVEYLRLMYTMRRMEITCDTEYK RTIRGFCHLYDGQEAVAVGVNSALD NDSWITSYRCHCVALSRGSTVEQIISELFGFKEGTVKGKGGSMHFYSK HNFYGGQGIVGAQVPVGTGLAFAN+Y TPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIERSSSNT+Y+TMGN+IPGIRMDGMNVVAVREGMKFVK+FVGSGNGP+FVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNL++HS+LS D VKEMEK IRKEVQDALKKAKAGSQPPLEELF+DIY  D+KG NQYPPYIRMPDRTKSR FA
Sbjct:  637 MLTMRRGLQLLGRKASRSSGGGLGGKVNATPPTAAFSSDSSITVDLSKAFDTHNLDSAPPTSATATKEELVEYLRLMYTMRRMEITCDTEYKTRTIRGFCHLYDGQEAVAVGVNSALDLNDSWITSYRCHCVALSRGSTVEQIISELFGFKEGTVKGKGGSMHFYSKSHNFYGGQGIVGAQVPVGTGLAFANRYKTPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIERSSSNTKYFTMGNRIPGIRMDGMNVVAVREGMKFVKEFVGSGNGPLFVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLIEHSLLSPDDVKEMEKQIRKEVQDALKKAKAGSQPPLEELFKDIY-CDDKGGNQYPPYIRMPDRTKSRTFA 1045          
BLAST of NO01G03940 vs. NCBI_GenBank
Match: GAX27155.1 (pyruvate dehydrogenase E1 component alpha subunit [Fistulifera solaris])

HSP 1 Score: 542.0 bits (1395), Expect = 1.700e-150
Identity = 258/381 (67.72%), Postives = 307/381 (80.58%), Query Frame = 0
Query:   33 RGMAPKAAFSSAASITVDLSKAFDLHNLEAAPPTEATATKEELVEYLRLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVAVGVNSALDFNDSWITSYRCHCVALSRGSTVEQIISELFGFKEGTVKGKGGSMHFYSKKHNFYGGQGIVGAQVPVGTGLAFANKYNTPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIERSSSNTRYYTMGNKIPGIRMDGMNVVAVREGMKFVKDFVGSGNGPIFVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLVDHSMLSSDGVKEMEKGIRKEVQDALKKAKAGSQPPLEELFRDIYSAD--EKGTNQYPPYIRMPDRTKS 412
            R    +  FS+  ++  DLS +F  HNLE AP      +K+EL     LMYTMRRMEITCD EYKAR IRGFCHLYDGQEAVA G+  ALD  DS+ITSYRCHC+AL+RG +V+Q+++ELFGF++G  KGKGGSMHFY+KKHNFYGGQGIVGAQVPVG GLAFANKYNTPPGE MPVAI  YGDGAANQGQIWEAANMA+LWKLPMIFCIENNQYGMGTSI+R SS++ YY MGN IPG+R+DGMNV+AVREGM+FVKD+  SG GP++VEM TYRYHGHSMSDPGTTYRNR+EI  TRSTRDP+E+VKK LVD    + D +KE EK IRK+VQ  + +AK  ++P ++ LF DI++ D   +  +++PP+IRMPD  KS
Sbjct:   15 RAATSRYYFSTGPAVVFDLSGSFQTHNLETAPNETTECSKDELWNMFELMYTMRRMEITCDNEYKARNIRGFCHLYDGQEAVATGILQALDEKDSYITSYRCHCIALARGGSVKQVVAELFGFEDGMTKGKGGSMHFYNKKHNFYGGQGIVGAQVPVGAGLAFANKYNTPPGERMPVAIGCYGDGAANQGQIWEAANMASLWKLPMIFCIENNQYGMGTSIDRHSSHSDYYKMGNHIPGVRIDGMNVLAVREGMRFVKDYCASGQGPMYVEMMTYRYHGHSMSDPGTTYRNREEIAFTRSTRDPLEFVKKCLVDAEFATPDELKEAEKRIRKDVQQQVMEAKESAKPSMDSLFEDIFAKDLVSRSGSEFPPHIRMPDYAKS 395          
BLAST of NO01G03940 vs. NCBI_GenBank
Match: EJK55386.1 (hypothetical protein THAOC_24894 [Thalassiosira oceanica])

HSP 1 Score: 535.4 bits (1378), Expect = 1.600e-148
Identity = 265/410 (64.63%), Postives = 314/410 (76.59%), Query Frame = 0
Query:    6 MFTMRCGLRVLGHK-VCSGSSVTAAAAARGMAPKAAFSSAASITVDLSKAFDLHNLEAAPPTEATATKEELVEYLRLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVAVGVNSALDFNDSWITSYRCHCVALSRGSTVEQIISELFGFKEGTVKGKGGSMHFYSKKHNFYGGQGIVGAQVPVGTGLAFANKYNTPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIERSSSNTRYYTMGNKIPGIRMDGMNVVAVREGMKFVKDFVGSGNGPIFVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLVDHSMLSSDGVKEMEKGIRKEVQDALKKAKAGSQPPLE-ELFRDIYSAD-EKGTNQYPPYIRMPDRTKSR 413
            MF  R    +L    V S +S  A  + RG       SS+  +T DL+ +F+ HNLE AP    T TK+EL+ +  LMYTMRRMEITCD EYKAR IRGFCHLYDGQEAVA G+N+A D  DSWITSYRCHC AL+RG TVE ++ ELFG   G  KGKGGSMHFY+K HNF+GGQGIVGAQVPVG GLAF N YN  PGE M VAIA YGDGAANQGQIWEAANMA+LWKLPM+FCIENN YGMGTS+ER SS++ YY MGN IPG+R+DGMNV+AV+EGM+FVKDFVGSGNGP++VEM TYRYHGHSMSDPGTTYRNR+EI  TRSTRDP+E+VKK L+D     ++ +KE EK IRK+V   +K AKA  +P +E  LF  ++++D  K  N++PP+IRMPD  KS+
Sbjct:    1 MFASRAASLLLRRSAVPSAASNAACNSLRGGLSVRQMSSSDEVTFDLTGSFETHNLETAPSDTITMTKDELLSHFELMYTMRRMEITCDNEYKARNIRGFCHLYDGQEAVATGINAAFDLEDSWITSYRCHCTALARGGTVESVLGELFGNAGGQTKGKGGSMHFYNKAHNFFGGQGIVGAQVPVGLGLAFTNHYNAKPGETMNVAIACYGDGAANQGQIWEAANMASLWKLPMVFCIENNHYGMGTSMERHSSHSDYYKMGNHIPGVRIDGMNVLAVKEGMRFVKDFVGSGNGPMYVEMMTYRYHGHSMSDPGTTYRNREEIALTRSTRDPLEFVKKTLIDAGFADAEQIKETEKRIRKDVASQVKAAKASPKPTVEPHLFEYVFTSDGGKEQNEFPPHIRMPDFAKSK 410          
BLAST of NO01G03940 vs. NCBI_GenBank
Match: GAX27614.1 (pyruvate dehydrogenase E1 component alpha subunit [Fistulifera solaris])

HSP 1 Score: 534.6 bits (1376), Expect = 2.600e-148
Identity = 264/399 (66.17%), Postives = 313/399 (78.45%), Query Frame = 0
Query:   15 VLGHKVCSGSSVTAAAAARGMAPKAAFSSAASITVDLSKAFDLHNLEAAPPTEATATKEELVEYLRLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVAVGVNSALDFNDSWITSYRCHCVALSRGSTVEQIISELFGFKEGTVKGKGGSMHFYSKKHNFYGGQGIVGAQVPVGTGLAFANKYNTPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIERSSSNTRYYTMGNKIPGIRMDGMNVVAVREGMKFVKDFVGSGNGPIFVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLVDHSMLSSDGVKEMEKGIRKEVQDALKKAKAGSQPPLEELFRDIYSAD--EKGTNQYPPYIRMPDRTKS 412
            +L   V    S+  AA +R       FS+  ++  DLS +F  HNLE AP      TK+EL     LMYTMRRMEITCD EYKAR IRGFCHLYDGQEAVA G+  ALD  DS+ITSYRCHC+AL+RG +V+Q+++ELFGF+EG  KGKGGSMHFY+KK+NFYGGQGIVGAQVPVG GLAFANKYNTPPGE MPVAI  YGDGAANQGQIWEAANMA+LWKLPMIFCIENNQYGMGTSI+R SS++ YY MGN IPG+R+DGMNV+AVREGM+FVKD   SG GP++VEM TYRYHGHSMSDPGTTYRNR+EI  TRSTRDP+E+VKK LVD    + D +KE EK IRK+VQ  + +AK  ++P ++ LF DI++ D   +  +++PP+IRMPD  KS
Sbjct:    1 MLSTVVKGNRSIVRAATSR------CFSTGPAV-FDLSGSFQTHNLETAPNETTECTKDELWNMFELMYTMRRMEITCDNEYKARNIRGFCHLYDGQEAVATGILQALDEKDSYITSYRCHCIALARGGSVKQVVAELFGFEEGMTKGKGGSMHFYNKKNNFYGGQGIVGAQVPVGAGLAFANKYNTPPGERMPVAIGCYGDGAANQGQIWEAANMASLWKLPMIFCIENNQYGMGTSIDRHSSHSDYYKMGNHIPGVRIDGMNVLAVREGMRFVKDHCASGQGPMYVEMMTYRYHGHSMSDPGTTYRNREEIAFTRSTRDPLEFVKKCLVDAEFATPDELKEAEKRIRKDVQQQVMEAKESAKPSMDSLFEDIFAKDLVSRSGSEFPPHIRMPDYAKS 392          
BLAST of NO01G03940 vs. NCBI_GenBank
Match: XP_009035434.1 (hypothetical protein AURANDRAFT_53060 [Aureococcus anophagefferens] >EGB09355.1 hypothetical protein AURANDRAFT_53060 [Aureococcus anophagefferens])

HSP 1 Score: 531.9 bits (1369), Expect = 1.700e-147
Identity = 266/384 (69.27%), Postives = 306/384 (79.69%), Query Frame = 0
Query:   30 AAARGMAPKAAFS-SAASITVDLSKAFDLHNLEAAPPTEATATKEELVEYLRLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVAVGVNSALDFNDSWITSYRCHCVALSRGSTVEQIISELFGFKEGTVKGKGGSMHFYSKKHNFYGGQGIVGAQVPVGTGLAFANKYNTPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIERSSSNTRYYTMGNKIPGIRMDGMNVVAVREGMKFVKDFVGSGNGPIFVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLVDHSMLSSDGVKEMEKGIRKEVQDALKKAKAGSQP-PLEELFRDIYSADEKGTNQYPPYIRMPDRTKS 412
            A +R   P A+ + S +++T++   A+  H  E AP   A  +KEEL+EY + MYTMRRMEITCD EYKARTIRGFCHLYDGQEA+  G+N+ALD  DSWITSYRCHC+ L+RG TVE +++EL G   G   GKGGSMHFY+K+ NFYGGQGIVGAQVPVGTGLAFANKY TP GE MPVAI  YGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSI RSSSN  YYTMGN IPGI+MDGMNV++VREGMK VKD+VGSGNGP++VEM+TYRYHGHSMSDPGTTYRNRDEI   RSTRDPIE VKK LVDH+  + + +K MEK IRKEV DA  +AKAG+ P  + +L  +IY   E G ++   YIRMPD TKS
Sbjct:    6 ALSRAARPAASSARSMSAVTIEFPGAYATHRCE-APDAVAETSKEELLEYFKTMYTMRRMEITCDNEYKARTIRGFCHLYDGQEAIGTGINAALDLEDSWITSYRCHCIMLARGGTVEGVLAELMGNAHGETGGKGGSMHFYNKEQNFYGGQGIVGAQVPVGTGLAFANKYKTPLGEKMPVAIGCYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSISRSSSNNDYYTMGNLIPGIKMDGMNVLSVREGMKHVKDYVGSGNGPMYVEMSTYRYHGHSMSDPGTTYRNRDEIAAMRSTRDPIEHVKKMLVDHTDATEEELKAMEKVIRKEVADACDRAKAGAPPDSIADLTNNIY-LTEDGKSEPQAYIRMPDYTKS 387          
BLAST of NO01G03940 vs. NCBI_GenBank
Match: XP_002184042.1 (precursor of dehydrogenase pyruvate dehydrogenase E1 component alpha subunit [Phaeodactylum tricornutum CCAP 1055/1] >EEC44711.1 precursor of dehydrogenase pyruvate dehydrogenase E1 component alpha subunit [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 524.6 bits (1350), Expect = 2.700e-145
Identity = 255/384 (66.41%), Postives = 307/384 (79.95%), Query Frame = 0
Query:   30 AAARGMAPKAAFSSAASITVDLSKAFDLHNLEAAPPTEATATKEELVEYLRLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVAVGVNSALDFNDSWITSYRCHCVALSRGSTVEQIISELFGFKEGTVKGKGGSMHFYSKKHNFYGGQGIVGAQVPVGTGLAFANKYNTPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIERSSSNTRYYTMGNKIPGIRMDGMNVVAVREGMKFVKDFVGSGNGPIFVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLVDHSMLSSDGVKEMEKGIRKEVQDALKKAKAGSQPPLEELFRDIY--SADEKGTNQYPPYIRMPDRTKS 412
            AAA+  +   +FS++   T DL+  F  HNL++AP    TATK+ELV+   LMYTMRRMEITCD EYKAR IRGFCHLYDGQEAVA G+ +A +  DSWITSYRCHC+AL+RG +V Q++ ELFG  +G  +GKGGSMHFY+KKHNF+GGQGIVGAQVPVG GLAFANKYN  PGE M VAIA YGDGAANQGQIWE+ANM+ALWKLPMIFCIENN YGMGTSI+R SS + YY MGN IPG+R+DGMNV+AVREGM+F K+F GSGNGP++VEM TYRYHGHSMSDPGTTYRNR+EI  TRSTRDP+E+VKK L+D+  +    +K  EK IRK VQ+ + KAK  + PPL+EL + I+  S + +  ++YPP+IRMP+  KS
Sbjct:   23 AAAKTSSLFRSFSTSDG-TFDLTGCFQTHNLDSAPSESVTATKQELVDIFELMYTMRRMEITCDNEYKARNIRGFCHLYDGQEAVATGILNAFEPEDSWITSYRCHCIALARGGSVRQVVGELFGVIDGMSRGKGGSMHFYNKKHNFFGGQGIVGAQVPVGAGLAFANKYNAKPGEKMNVAIACYGDGAANQGQIWESANMSALWKLPMIFCIENNHYGMGTSIDRHSSISDYYKMGNSIPGLRIDGMNVLAVREGMRFAKEFCGSGNGPMYVEMMTYRYHGHSMSDPGTTYRNREEIAFTRSTRDPLEFVKKCLLDNEFIDEAEIKSTEKRIRKSVQEEVMKAKESTSPPLDELTKHIFATSLEPQCDSEYPPHIRMPNYEKS 405          
BLAST of NO01G03940 vs. NCBI_GenBank
Match: XP_002287523.1 (pyruvate dehydrogenase [Thalassiosira pseudonana CCMP1335] >EED94966.1 pyruvate dehydrogenase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 523.9 bits (1348), Expect = 4.700e-145
Identity = 248/374 (66.31%), Postives = 303/374 (81.02%), Query Frame = 0
Query:   43 SAASITVDLSKAFDLHNLEAAPPTEATATKEELVEYLRLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVAVGVNSALDFNDSWITSYRCHCVALSRGSTVEQIISELFGFKEGTVKGKGGSMHFYSKKHNFYGGQGIVGAQVPVGTGLAFANKYNTPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIERSSSNTRYYTMGNKIPGIRMDGMNVVAVREGMKFVKDFVGSGNGPIFVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLVDHSMLSSDGVKEMEKGIRKEVQDALKKAKAGSQPPLE-ELFRDIYSAD-EKGTNQYPPYIRMPDRTKSREF 415
            S  + T DL+ +F+ +NL+  P      TK+EL+ +  LMYTMRRMEITCD EYKAR IRGFCHLYDGQEAVA G+N+A D  DSWITSYRCHC AL+RG +V  ++ ELFG  +G  KGKGGSMHFY+K HNF+GGQGIVGAQVPVG GLAFAN YN  PG+ M VAIA YGDGAANQGQIWE+ANMA+LWKLPMIFCIENN YGMGTS++R SS++ YY MGN IPG+R+DGMNV+AV+EGM+FVKD+VG+GNGP++VEM TYRYHGHSMSDPGTTYRNR+EI  TRSTRDP+E+VK+ LVD     ++ +KE+EK IRK+V + +K+AKA S+P +E  LF  +YS+D  K  N++PP+IRMPD  KS+ +
Sbjct:    2 STDTATFDLTGSFETYNLDTQPNNTIEMTKDELLSHFELMYTMRRMEITCDNEYKARAIRGFCHLYDGQEAVATGINAAFDPEDSWITSYRCHCTALARGGSVASVLGELFGHVDGQTKGKGGSMHFYNKAHNFFGGQGIVGAQVPVGLGLAFANHYNATPGKPMQVAIACYGDGAANQGQIWESANMASLWKLPMIFCIENNHYGMGTSMDRHSSHSDYYKMGNHIPGVRIDGMNVLAVKEGMRFVKDYVGNGNGPMYVEMMTYRYHGHSMSDPGTTYRNREEIALTRSTRDPLEFVKRTLVDAGFTDAEEIKEIEKRIRKDVANQVKQAKASSKPTVEPHLFEYVYSSDGGKEQNEFPPHIRMPDFAKSKNY 375          
BLAST of NO01G03940 vs. NCBI_GenBank
Match: GAX92888.1 (pyruvate dehydrogenase E1 alpha subunit [Pythium insidiosum])

HSP 1 Score: 510.8 bits (1314), Expect = 4.100e-141
Identity = 253/390 (64.87%), Postives = 304/390 (77.95%), Query Frame = 0
Query:   24 SSVTAAAAARGMAPKAAFSSAAS--ITVDLSKAFDLHNLEAAPPTEATATKEELVEYLRLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVAVGVNSALDFNDSWITSYRCHCVALSRGSTVEQIISELFGFKEGTVKGKGGSMHFYSKKHNFYGGQGIVGAQVPVGTGLAFANKYNTPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIERSSSNTRYYTMGNKIPGIRMDGMNVVAVREGMKFVKDFVGSGNGPIFVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLVDHSMLSSDGVKEMEKGIRKEVQDALKKAKAGSQPPLEELFRDIYSADEKGTNQYPPYIRMPDRTKS 412
            ++ T  A     A   AFS+AA+  I+ +L+  F LH LE  P T A  ++EEL+ + RLMYTMRRMEITCD EYKAR IRGFCHLYDGQEAVA GV +ALD  DSWITSYR HC  L+RG TV++I+ ELFG   G +KGKGGSMHFY K++NF+GGQGIVGAQVPVG GLAFA+KYN      MP AI M+GDGAANQGQIWEAANMAALWKLP IFCIENN YGMGTS ERSSSNT YYTMGNKIPG+  DGM+V+AVRE +KF+K + G GNGPI+VEM+TYRYHGHSMSDPG TYRNR+EI Q R++RDPIE VKK L+D+++ +++ +KE+EK +R EV  A K+AKA  +P     F D+Y+ D KG ++YPP+IR+PD  KS
Sbjct:    7 AAATRQALRASPAAARAFSAAANGEISFELANPFKLHRLEKGPETVAKTSREELLGFYRLMYTMRRMEITCDNEYKARQIRGFCHLYDGQEAVATGVEAALDRTDSWITSYRNHCTMLARGGTVKEILGELFGMSAGAIKGKGGSMHFYKKENNFFGGQGIVGAQVPVGVGLAFASKYNHKGDGLMPCAITMFGDGAANQGQIWEAANMAALWKLPAIFCIENNHYGMGTSAERSSSNTEYYTMGNKIPGVWCDGMDVLAVRECVKFLKQWCGEGNGPIYVEMSTYRYHGHSMSDPGVTYRNREEISQMRASRDPIESVKKRLLDNNLATAEEIKEIEKEVRAEVVKAAKEAKASGRPAEHTAFEDVYT-DGKGGSEYPPFIRLPDYAKS 395          
BLAST of NO01G03940 vs. NCBI_GenBank
Match: XP_024584093.1 (pyruvate dehydrogenase (acetyl-transferring) e1 alpha subunit [Plasmopara halstedii] >CEG47724.1 pyruvate dehydrogenase (acetyl-transferring) e1 alpha subunit [Plasmopara halstedii])

HSP 1 Score: 506.5 bits (1303), Expect = 7.700e-140
Identity = 251/387 (64.86%), Postives = 297/387 (76.74%), Query Frame = 0
Query:   25 SVTAAAAARGMAPKAAFSSAASITVDLSKAFDLHNLEAAPPTEATATKEELVEYLRLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVAVGVNSALDFNDSWITSYRCHCVALSRGSTVEQIISELFGFKEGTVKGKGGSMHFYSKKHNFYGGQGIVGAQVPVGTGLAFANKYNTPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIERSSSNTRYYTMGNKIPGIRMDGMNVVAVREGMKFVKDFVGSGNGPIFVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLVDHSMLSSDGVKEMEKGIRKEVQDALKKAKAGSQPPLEELFRDIYSADEKGTNQYPPYIRMPDRTKS 412
            ++T +A     A  AA +S+     + S  F+LH LE  PP  A   +EE+++Y  LMYTMRRMEIT D EYKARTIRGFCHLYDGQEAVA GV +ALD NDSWITSYR HC+ L+RG TV+ I++ELFG   G   GKGGSMHFY+KK NFYGGQGIVGAQVPVG GLAFA+KYN      MP AI M+GDGAANQGQ++EAANMAALWKLP+IFCIENNQYGMGTS +RSS+NT YYT+GNKIPGI+ DG +V+AVRE  KF+K + G GNGPIFVEMNTYRYHGHSMSDPG TYRNRDEI Q R++RDPIE VKK +++  + ++D +KE+EK +R EV  A K AKA  +P     F D+Y+ D KG N YPP+IR PD TKS
Sbjct:    7 ALTRSATKATRAFSAATNSSNEAKFEFSMPFELHRLEQGPPEFAVTNREEMLDYYNLMYTMRRMEITNDNEYKARTIRGFCHLYDGQEAVATGVEAALDRNDSWITSYRNHCIMLARGGTVKDILAELFGMASGATGGKGGSMHFYNKKANFYGGQGIVGAQVPVGAGLAFASKYNHKGDGPMPCAITMFGDGAANQGQVFEAANMAALWKLPVIFCIENNQYGMGTSTKRSSNNTDYYTLGNKIPGIKCDGNDVLAVRECTKFMKKWCGEGNGPIFVEMNTYRYHGHSMSDPGVTYRNRDEISQMRASRDPIEMVKKRMIEAELATADEIKEIEKKVRAEVVKATKDAKAAGKPHESAAFTDVYT-DGKGNNAYPPFIRFPDYTKS 392          
BLAST of NO01G03940 vs. NCBI_GenBank
Match: POM65406.1 (Pyruvate dehydrogenase E1 component subunit alpha [Phytophthora palmivora var. palmivora])

HSP 1 Score: 501.5 bits (1290), Expect = 2.500e-138
Identity = 247/384 (64.32%), Postives = 296/384 (77.08%), Query Frame = 0
Query:   28 AAAAARGMAPKAAFSSAASITVDLSKAFDLHNLEAAPPTEATATKEELVEYLRLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVAVGVNSALDFNDSWITSYRCHCVALSRGSTVEQIISELFGFKEGTVKGKGGSMHFYSKKHNFYGGQGIVGAQVPVGTGLAFANKYNTPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIERSSSNTRYYTMGNKIPGIRMDGMNVVAVREGMKFVKDFVGSGNGPIFVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLVDHSMLSSDGVKEMEKGIRKEVQDALKKAKAGSQPPLEELFRDIYSADEKGTNQYPPYIRMPDRTKS 412
            AA A R  +  AA +++     + S  F+LH L+  P   A   ++E++EY  LMYTMRRMEIT D EYKAR IRGFCHLYDGQEAVA GV +ALD  DSWITSYR HC+ L+RG+TV+ +++ELFG K+G   GKGGSMHFY K  NFYGGQGIVGAQVPVG GLAFA+KYN      MP AI M+GDGA+NQGQ++EAANMAALWKLP+IFCIENN YGMGTSI+RSS+NT YYTMGNKIPGI+ DG +V+AVRE  KF+K + G GNGPIFVEMNTYRYHGHSMSDPG TYRNRDEI Q R+TRDPIE VKK +++  + ++D +KE+EK +R EV  A K+AKA  +P L   F D+Y+ D KG N+YPP+IR PD  KS
Sbjct:   62 AAPATRAFS--AAANASGEAKFEFSTPFELHRLDQGPAEFAVTNRKEMLEYYELMYTMRRMEITNDNEYKARNIRGFCHLYDGQEAVATGVEAALDRKDSWITSYRNHCIMLARGATVKDVLAELFGMKDGATGGKGGSMHFYKKDTNFYGGQGIVGAQVPVGAGLAFASKYNHNGEGLMPCAITMFGDGASNQGQVFEAANMAALWKLPVIFCIENNHYGMGTSIQRSSNNTDYYTMGNKIPGIKCDGNDVLAVRECTKFLKQWCGEGNGPIFVEMNTYRYHGHSMSDPGVTYRNRDEISQMRATRDPIELVKKRMIEAELATADEIKELEKKVRAEVVKATKEAKASGKPDLSAAFTDVYT-DGKGKNEYPPFIRFPDNAKS 442          
The following BLAST results are available for this feature:
BLAST of NO01G03940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29330.17.300e-20787.80pyruvate dehydrogenase e1 component alpha subunit ... [more]
GAX27155.11.700e-15067.72pyruvate dehydrogenase E1 component alpha subunit ... [more]
EJK55386.11.600e-14864.63hypothetical protein THAOC_24894 [Thalassiosira oc... [more]
GAX27614.12.600e-14866.17pyruvate dehydrogenase E1 component alpha subunit ... [more]
XP_009035434.11.700e-14769.27hypothetical protein AURANDRAFT_53060 [Aureococcus... [more]
XP_002184042.12.700e-14566.41precursor of dehydrogenase pyruvate dehydrogenase ... [more]
XP_002287523.14.700e-14566.31pyruvate dehydrogenase [Thalassiosira pseudonana C... [more]
GAX92888.14.100e-14164.87pyruvate dehydrogenase E1 alpha subunit [Pythium i... [more]
XP_024584093.17.700e-14064.86pyruvate dehydrogenase (acetyl-transferring) e1 al... [more]
POM65406.12.500e-13864.32Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007901NSK007901Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03940.1NO01G03940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577236gene_405Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100136g4gene1301Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03940.1NO01G03940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03940 ID=NO01G03940|Name=NO01G03940|organism=Nannochloropsis oceanica|type=gene|length=1473bp
ATGTCAATGAGCGGgttcgtatgtacaggtttcgcagtggctattcgttt
agtcctctctcagctcacttgcgtcttctcgtgtgtgctccatcctcaat
cagcccacaccgcacggaccaaccacacaaccacagGATGTTCACCATGC
GATGTGGACTCCGGGTCCTCGGACACAAGGTTTGCAGCGGTAGCAGCGTG
ACGGCGGCGGCGGCGGCTCGTGGCATGGCGCCCAAGGCTGCCTTCTCGTC
GGCCGCCTCTATCACGGTCGATCTCTCCAAAGCCTTCGACTTGCACAgta
cgttctatgattgcttgccaacctacgtatcgcatgccccatccgtggct
agacatcacactctatcgttccatttgcacctcccttctctcaatcatag
ACCTGGAAGCAGCCCCCCCCACCGAGGCCACGGCCACTAAGGAAGAGCTA
GTCGAATATCTGCGGCTCATGTACACAATGCGGCGCATGGAGATCACGTG
TGACACTGAGTACAAAGCCCGGACCATCCGTGGGTTTTGCCACTTGTACG
ATGGACAGGAAGCCGTGGCGGTGGGGGTAAACTCGGCATTGGACTTCAAT
GATTCATGGATTACCTCTTACCGATGCCATTGCGTGGCGCTTTCTCGCGG
GTCAACGGTGGAGCAAATTATTTCCGAGCTCTTCGGGTTCAAGGAGGGGA
CAGTTAAGGGAAAGGGTGGCTCGATGCATTTTTATAGCAAGAAGCACAAT
TTTTACGGCGGGCAGGGGATCGTCGGGGCGCAGGTGCCAGTGGGGACGGG
CTTGGCCTTCGCGAACAAATACAATACTCCTCCCGGGGAGAACATGCCTG
TGGCAATTGCGATGTACGGAGACGGGGCAGCCAACCAGGGCCAGATCTGG
GAGGCTGCCAACATGGCGGCGTTGTGGAAGTTGCCGATGATTTTTTGCAT
TGAGAATAACCAGTATGGGATGGGGACGTCGATTGAGCGGTCAAGCTCCA
ACACGAGGTACTACACCATGGGGAATAAAATACCCGGAATTCGCATGGAT
GGCATGAATGTGGTGGCCGTCCGCGAGGGGATGAAGTTCGTGAAGGACTT
TGTGGGGTCGGGGAACGGCCCGATTTTCGTGGAGATGAATACTTACCGTT
ACCACGGGCACTCCATGTCCGACCCGGGCACGACCTACCGCAACCGCGAC
GAGATCGTTCAGACACGCTCCACCCGGGACCCGATCGAGTGGGTAAAGAA
GAACCTGGTCGACCACTCGATGCTGTCTTCGGATGGTGTCAAGGAGATGG
AGAAGGGGATTCGGAAAGAGGTCCAGGATGCGTTGAAGAAGGCCAAGGCT
GGGTCTCAGCCGCCGTTGGAGGAATTGTTCAGGGATATCTACAGCGCGGA
TGAGAAGGGCACGAATCAGTACCCGCCTTACATTCGTATGCCTGATCGGA
CAAAGAGCAGGGAGTTTGCGTAG
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protein sequence of NO01G03940.1

>NO01G03940.1-protein ID=NO01G03940.1-protein|Name=NO01G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MSMSGMFTMRCGLRVLGHKVCSGSSVTAAAAARGMAPKAAFSSAASITVD
LSKAFDLHNLEAAPPTEATATKEELVEYLRLMYTMRRMEITCDTEYKART
IRGFCHLYDGQEAVAVGVNSALDFNDSWITSYRCHCVALSRGSTVEQIIS
ELFGFKEGTVKGKGGSMHFYSKKHNFYGGQGIVGAQVPVGTGLAFANKYN
TPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMG
TSIERSSSNTRYYTMGNKIPGIRMDGMNVVAVREGMKFVKDFVGSGNGPI
FVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLVDHSML
SSDGVKEMEKGIRKEVQDALKKAKAGSQPPLEELFRDIYSADEKGTNQYP
PYIRMPDRTKSREFA*
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Synonyms
Publications