NO01G03890, NO01G03890 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G03890 vs. NCBI_GenBank
Match: WP_041710797.1 (SsrA-binding protein SmpB [Prochlorococcus marinus]) HSP 1 Score: 136.3 bits (342), Expect = 1.400e-28 Identity = 67/143 (46.85%), Postives = 94/143 (65.73%), Query Frame = 0 Query: 136 ATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMK 279 A N+YAK YEI + EAGI L+GTEV + +G LRD YC RDGE+ + N+ I PHK G +F H R R+LL+HKKE+ +L + + G TI+PL IYL + IK+ + IG+G K +DKR+A K+++IKR + +K Sbjct: 22 AENRYAKFQYEISETIEAGIELLGTEVKSIRNGNVNLRDGYCSFRDGEILLLNVHISPHKNVGSFFNHDPLRNRKLLLHKKEIFKLKSNTEKKGLTIIPLSIYLKGSW-IKLTIGIGKGKKLHDKRQADKQKDIKREIKTALK 163
BLAST of NO01G03890 vs. NCBI_GenBank
Match: WP_068511064.1 (SsrA-binding protein SmpB [Leptolyngbya sp. O-77] >BAU42835.1 SsrA-binding protein [Leptolyngbya sp. O-77]) HSP 1 Score: 135.6 bits (340), Expect = 2.400e-28 Identity = 64/146 (43.84%), Postives = 99/146 (67.81%), Query Frame = 0 Query: 133 RICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMK 279 ++ A N+ A+ YEI + FEAGI LVGTEV V +G+ LRD + +R+GE+W+HN+ I PH T +YF H +R R+LL+H++E+ +L+ + G T+VPLK+YL +K+ +A+ RG K +DKRE K+++ KR ++ MK Sbjct: 9 KVVAENRQARFEYEILETFEAGIELVGTEVKSVRAGKANLRDGFALIRNGEVWLHNVHISPHDTASQYFNHDPRRTRKLLMHRQEIRKLIGKVEQQGLTLVPLKMYLKRGW-VKISLALARGKKLHDKREDLKQKQAKREMQRAMK 153
BLAST of NO01G03890 vs. NCBI_GenBank
Match: AFZ47227.1 (SsrA-binding protein [Cyanobacterium stanieri PCC 7202]) HSP 1 Score: 135.2 bits (339), Expect = 3.200e-28 Identity = 65/148 (43.92%), Postives = 98/148 (66.22%), Query Frame = 0 Query: 133 RICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMKSF 281 ++ + N+ A+ YEI +EAGI L GTEV V +G+ LRD YC +R+GE W+ N+ I PH+T G+YF H KR R+LL+HKKE+ +L+ + G T++PLK+Y+ IKV + +G+G K +DKRE K R+ +R ++MK + Sbjct: 8 KVISDNRQARYLYEILDTYEAGIQLGGTEVKSVRAGKVNLRDGYCLIRNGEAWLMNVHIAPHQTAGQYFNHEPKRDRKLLLHKKEINKLIGLLEQKGLTLIPLKMYIKGDW-IKVSLGLGKGKKLHDKRETIKRRDDERQMARMMKRY 154
BLAST of NO01G03890 vs. NCBI_GenBank
Match: WP_032522757.1 (SsrA-binding protein SmpB [Prochlorococcus marinus] >KGF95040.1 tmRNA-binding protein SmpB [Prochlorococcus marinus str. MIT 9201]) HSP 1 Score: 135.2 bits (339), Expect = 3.200e-28 Identity = 67/151 (44.37%), Postives = 96/151 (63.58%), Query Frame = 0 Query: 128 QHTIKRICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMK 279 ++ KR+ A N+YAK Y I + EAGI L+GTEV + +G+ LRD YC RDGE+ + N+ I PHK G YF H R R+LL+HKKE+++L S + G TI+PL +YL IK+ + IG+G K +DKR+ K++ IK+ +K Sbjct: 15 ENNFKRL-AENRYAKFQYAISETIEAGIELLGTEVKSIRNGKANLRDGYCSFRDGEILLLNVHISPHKNVGSYFNHDPLRNRKLLLHKKEIIKLKSNSEKKGMTIIPLSLYLKGPW-IKLSIGIGKGKKLHDKRQDEKQKSIKKEINSALK 163
BLAST of NO01G03890 vs. NCBI_GenBank
Match: WP_066347748.1 (SsrA-binding protein SmpB [Geminocystis sp. NIES-3708] >BAQ62275.1 tmRNA-binding protein SmpB [Geminocystis sp. NIES-3708]) HSP 1 Score: 135.2 bits (339), Expect = 3.200e-28 Identity = 65/148 (43.92%), Postives = 97/148 (65.54%), Query Frame = 0 Query: 133 RICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMKSF 281 +I + N+ A+ YEI + +EAGI L GTEV + G+ LRD Y +R+GE W+ N+ I P++ +GKYF H +R R+LL+HKKE+ +L+ + G T++PLK+YL H +K+ + +GRG K +DKRE K RE +R + MK F Sbjct: 8 KIVSDNRQARYLYEILETYEAGIELTGTEVKSIRMGKVNLRDGYALIRNGEAWLSNVHISPYEISGKYFNHEPRRNRKLLLHKKEINKLIGLLEQQGLTLIPLKMYLKG-HWVKISLGLGRGKKLHDKRETVKRREDQREMARAMKRF 154
BLAST of NO01G03890 vs. NCBI_GenBank
Match: WP_069790657.1 (SsrA-binding protein SmpB [Cyanobacterium sp. IPPAS B-1200] >OEJ78657.1 SsrA-binding protein [Cyanobacterium sp. IPPAS B-1200] >AUC60855.1 SsrA-binding protein [Cyanobacterium sp. HL-69]) HSP 1 Score: 135.2 bits (339), Expect = 3.200e-28 Identity = 64/148 (43.24%), Postives = 98/148 (66.22%), Query Frame = 0 Query: 133 RICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMKSF 281 ++ + N+ A+ YEI +EAGI L GTEV V +G+ LRD YC +R+GE W+ N+ I PH+T G+YF H KR R+LL+HKKE+ +L+ + G ++VPLK+Y+ IK+ + +G+G K +DKRE K R+ +R ++MK + Sbjct: 8 KVISDNRQARYLYEILDTYEAGIQLGGTEVKSVRAGKVNLRDGYCLIRNGEAWLMNVHIAPHQTAGQYFNHEPKRDRKLLLHKKEISKLIGLLEQKGLSLVPLKMYIKGDW-IKINLGLGKGKKLHDKRETIKRRDDERQMARVMKQY 154
BLAST of NO01G03890 vs. NCBI_GenBank
Match: WP_079321964.1 (SsrA-binding protein SmpB [Prochlorococcus sp. HOT208_60m_813G15]) HSP 1 Score: 135.2 bits (339), Expect = 3.200e-28 Identity = 67/151 (44.37%), Postives = 98/151 (64.90%), Query Frame = 0 Query: 128 QHTIKRICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMK 279 ++ KR+ A NKYAK Y I + EAGI L+GTEV + +G+ LRD YC RDGE+ + N+ I PHK G +F H R R+LL+HKKE+++L + + G TIVPL +YL + IK+ + +G+G K +DKR+ K++ IKR + +K Sbjct: 15 ENNFKRL-AENKYAKFQYAITETIEAGIELLGTEVKSIRNGKANLRDGYCTFRDGEILLLNVHISPHKNVGSFFNHDPLRNRKLLLHKKEIIKLKSNNEKKGMTIVPLSLYLKGSW-IKLTIGVGKGKKLHDKRQEEKQKSIKREIKSALK 163
BLAST of NO01G03890 vs. NCBI_GenBank
Match: WP_012008499.1 (SsrA-binding protein [Prochlorococcus marinus] >A8G7C2.1 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B >ABV51503.1 tmRNA binding protein SmpB [Prochlorococcus marinus str. MIT 9215]) HSP 1 Score: 134.8 bits (338), Expect = 4.100e-28 Identity = 64/148 (43.24%), Postives = 96/148 (64.86%), Query Frame = 0 Query: 131 IKRICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMK 279 I ++ A N+YAK YEI + EAGI L+GTEV + +G+ LRD YC RD E+ + N+ I PHK G +F H R R+LL+HKKE++++ ++ + G TIVPL +YL + IK+ + +G+G K +DKR+ K++ IKR +K Sbjct: 17 IFKLLADNRYAKFQYEISETIEAGIELLGTEVKSIRNGKANLRDGYCSFRDNEILLLNVHISPHKNVGSFFNHDPLRNRKLLLHKKEIIKMKSSTEKKGMTIVPLNLYLKGSW-IKLTIGVGKGKKLHDKRQDEKQKSIKREINSALK 163
BLAST of NO01G03890 vs. NCBI_GenBank
Match: EJX26187.1 (SsrA-binding protein [Thermotoga sp. EMP] >AGL49178.1 tmRNA-binding protein SmpB [Thermotoga maritima MSB8] >AHD17982.1 single-stranded DNA-binding protein [Thermotoga maritima MSB8] >AIY86251.1 SsrA-binding protein [Thermotoga sp. 2812B]) HSP 1 Score: 134.8 bits (338), Expect = 4.100e-28 Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 0 Query: 133 RICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMK 279 ++ ATNK A + YEI + +EAGI L GTEV + +G +D++CR ++GEL++ NL I P+ G Y H +RPR+LL+HK+E+ LM +G TIVPLKIY KVE+A+ RG KKYDKREA K+RE++R + MK Sbjct: 2 KVVATNKKAYTDYEILETYEAGIVLTGTEVKSLRNGSVNFKDSFCRFKNGELYLLNLHIPPYSHGGVY-NHDPERPRKLLLHKRELKRLMGKVQEEGVTIVPLKIYFNDRGIAKVEIAVARGKKKYDKREAIKKREMERKIREYMK 146
BLAST of NO01G03890 vs. NCBI_GenBank
Match: WP_004082958.1 (MULTISPECIES: SsrA-binding protein SmpB [Thermotoga] >NP_228068.1 SsrA-binding protein [Thermotoga maritima MSB8]) HSP 1 Score: 134.8 bits (338), Expect = 4.100e-28 Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 0 Query: 133 RICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMK 279 ++ ATNK A + YEI + +EAGI L GTEV + +G +D++CR ++GEL++ NL I P+ G Y H +RPR+LL+HK+E+ LM +G TIVPLKIY KVE+A+ RG KKYDKREA K+RE++R + MK Sbjct: 11 KVVATNKKAYTDYEILETYEAGIVLTGTEVKSLRNGSVNFKDSFCRFKNGELYLLNLHIPPYSHGGVY-NHDPERPRKLLLHKRELKRLMGKVQEEGVTIVPLKIYFNDRGIAKVEIAVARGKKKYDKREAIKKREMERKIREYMK 155 The following BLAST results are available for this feature:
BLAST of NO01G03890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G03890 ID=NO01G03890|Name=NO01G03890|organism=Nannochloropsis oceanica|type=gene|length=1380bpback to top protein sequence of NO01G03890.1 >NO01G03890.1-protein ID=NO01G03890.1-protein|Name=NO01G03890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bpback to top Synonyms
Publications
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