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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1038894..1040273 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03890.1 vs.
Match: XP_005854882.1 (hypothetical protein NGA_2084900, partial [Nannochloropsis gaditana CCMP526]; EKU21478.1 hypothetical protein NGA_2084900, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 302.0 bits (772), Expect = 2.000e-78 Identity = 142/162 (87.65%), Postives = 153/162 (94.44%), Query Frame = 0
Query: 119 ITMKGLPDPQHTIKRICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMKSF 281
+ MKG DP HT+KRICATNKYAKSSYEIGKKFEAGISLVGTE+GPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQH EKRPRRLLVHKKE+LEL YAS RDGQTIVPL IYLTATHR+KVEVAIGRGIKKYDKREA K+REIKRGFE+++K++
Sbjct: 116 LVMKGAADPHHTVKRICATNKYAKSSYEIGKKFEAGISLVGTEIGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHAEKRPRRLLVHKKEILELKYASDRDGQTIVPLCIYLTATHRVKVEVAIGRGIKKYDKREAVKQREIKRGFERLLKTY 277
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03890.1 ID=NO01G03890.1|Name=NO01G03890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1249bp GGTGGATTTGAGCTCTTCACCTTTTTTGCTATAATCGATTCGGCGAACCC CGACCCGGAAATAGAGGGCAGGGGGATAACTGAAAGCCAAATATAAACCC ACGCCTAAGGGTCGCAAAAGTCATTTAGAGGACAAGCACACAGCATTCGG CAGATCCATGGACCCGCGCTTGAGCCTCTTGTATTGGTTTTCGTGAGGTT TGGCAGAAAGGAGATGTAGTATATGTGATACACCTCACCGGAGCTTCTTA CCACCACCACACCGACGTAGCGTACCGCCCGCGACATCTTCGGCATGTGG CCATTGTCAAATAGCAGTCCCCATGCCTGGGTCAGGACGAGACCACGGAG CGCTGCCACGCCGTCTGCGTCCTCCTCCTCTTCCTCCTCCTCGTGGTCAT CCTCGTGGTCATCATCAAACCTCCCCTTCCCCCTCTTCATGCTCGGATTT GTCCTCCTCACCAGTGCCTGCTGTCACGCTATCCAGTACAACACTCTTTC CACTAAAGGACTACAACGATGTTCACCATCATCCCAGGTATCGACTGCTT TCGGTTCCTCGACTGCATTTGGTACCTCGCCTCCCACCCTTTTCGGTCCT ATCTTTCCACCCTTACCCTGCCGCCCCTCCTCCTCCTCCTCCTGCATTAT TACCATGAAAGGCCTCCCCGATCCACAACATACCATCAAACGTATCTGCG CCACGAACAAATACGCCAAATCCTCCTACGAAATAGGCAAGAAGTTCGAA GCTGGCATCTCTCTCGTTGGAACAGAAGTGGGGCCTGTTGCCTCTGGACA GTGTCAATTAAGAGACGCGTATTGTCGCGTGCGTGATGGGGAGCTATGGA TTCATAATCTGTTCATTGGACCACACAAGACGACGGGAAAATATTTCCAG CATGTTGAGAAGAGGCCACGGCGGCTGTTGGTTCATAAAAAAGAGGTCTT GGAGCTGATGTATGCGTCGGCCAGGGATGGGCAGACCATTGTACCATTGA AGATTTATTTGACAGCAACGCACAGGATAAAGGTGGAAGTGGCCATAGGA CGGGGCATCAAGAAATACGACAAGCGTGAGGCGGCAAAGGAACGGGAGAT CAAGCGGGGCTTCGAGAAGATTATGAAAAGTTTCTAACTTTGCTTGTTTT TGGAATGAAAAGGACCGGAAAATAATCAAAAAATGAATCAAATACGCACA TTAATTAAATGAGCATGGTCACCCAGCCTTACGGTCAGCTAGGAAAAAA back to topprotein sequence of NO01G03890.1 >NO01G03890.1-protein ID=NO01G03890.1-protein|Name=NO01G03890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp MWPLSNSSPHAWVRTRPRSAATPSASSSSSSSSWSSSWSSSNLPFPLFML GFVLLTSACCHAIQYNTLSTKGLQRCSPSSQVSTAFGSSTAFGTSPPTLF GPIFPPLPCRPSSSSSCIITMKGLPDPQHTIKRICATNKYAKSSYEIGKK FEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKY FQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVA IGRGIKKYDKREAAKEREIKRGFEKIMKSF* back to topmRNA from alignment at chr1:1038894..1040273+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03890.1 ID=NO01G03890.1|Name=NO01G03890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp|location=Sequence derived from alignment at chr1:1038894..1040273+ (Nannochloropsis oceanica) GGTGGATTTGAGCTCTTCACCTTTTTTGCTATAATCGATTCGGCGAACCC
CGACCCGGAAATAGAGGGCAGGGGGATAACTGAAAGCCAAATATAAACCC
ACGCCTAAGGGTCGCAAAAGTCATTTAGAGGACAAGCACACAGCATTCGG
CAGATCCATGGACCCGCGCTTGAGCCTCTTGTATTGGTTTTCGTGAGGTT
TGGCAGAAAGGAGATGTAGTATATGTGATACACCTCACCGGAGCTTCTTA
CCACCACCACACCGACGTAGCGTACCGCCCGCGACATCTTCGGCATGTGG
CCATTGTCAAATAGCAGTCCCCATGCCTGGGTCAGGACGAGACCACGGAG
CGCTGCCACGCCGTCTGCGTCCTCCTCCTCTTCCTCCTCCTCGTGGTCAT
CCTCGTGGTCATCATCAAACCTCCCCTTCCCCCTCTTCATGCTCGGATTT
GTCCTCCTCACCAGTGCCTGCTGTCACGCTATCCAGTACAACACTCTTTC
CACTAAAGGACTACAACGATGTTCACCATCATCCCAGGTATCGACTGCTT
TCGGTTCCTCGACTGCATTTGGTACCTCGCCTCCCACCCTTTTCGGTCCT
ATCTTTCCACCCTTACCCTGCCGCCCCTCCTCCTCCTCCTCCTGCATTAT
TACCATGAAAGGCCTCCCCGATCCACAACATACCATCAAACGTATCTGCG
CCACGAACAAATACGCCAAATCCTCCTACGAAATAGGCAAGAAGTTCGAA
GCTGGCATCTCTCTCGTTGGAACAGAAGTGGGGCCTGTTGCCTCTGGACA
GTGTCAATTAAGAGACGCGTATTGTCGCGTGCGTGATGGGGAGCTATGGA
TTCATAATCTGTTCATTGGACCACACAAGACGACGGGAAAATATTTCCAG
CATGTTGAGAAGAGGCCACGGCGGCTGTTGGTTCATAAAAAAGAGGTCTT
GGAGCTGATGTATGCGTCGGCCAGGGATGGGCAGACCATTGTACCATTGA
AGATTTATTTGACAGCAACGCACAGGTACGTACCCAAAAAAAAGAAAAGA
GGGTAAGATGGCAGGCAGTTTCGATTGCTAAGACGTGCGCTTTTTGTTTG
TCTCATCTCTCTTGTCTCTTTCTTCGCCTTCCTCCTTCCTTGTTATGTTA
TTCCAGGATAAAGGTGGAAGTGGCCATAGGACGGGGCATCAAGAAATACG
ACAAGCGTGAGGCGGCAAAGGAACGGGAGATCAAGCGGGGCTTCGAGAAG
ATTATGAAAAGTTTCTAACTTTGCTTGTTTTTGGAATGAAAAGGACCGGA
AAATAATCAAAAAATGAATCAAATACGCACATTAATTAAATGAGCATGGT
CACCCAGCCTTACGGTCAGCTAGGAAAAAA back to topCoding sequence (CDS) from alignment at chr1:1038894..1040273+ >NO01G03890.1 ID=NO01G03890.1|Name=NO01G03890.1|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at chr1:1038894..1040273+ (Nannochloropsis oceanica) ATGTGGCCATTGTCAAATAGCAGTCCCCATGCCTGGGTCAGGACGAGACC ACGGAGCGCTGCCACGCCGTCTGCGTCCTCCTCCTCTTCCTCCTCCTCGT GGTCATCCTCGTGGTCATCATCAAACCTCCCCTTCCCCCTCTTCATGCTC GGATTTGTCCTCCTCACCAGTGCCTGCTGTCACGCTATCCAGTACAACAC TCTTTCCACTAAAGGACTACAACGATGTTCACCATCATCCCAGGTATCGA CTGCTTTCGGTTCCTCGACTGCATTTGGTACCTCGCCTCCCACCCTTTTC GGTCCTATCTTTCCACCCTTACCCTGCCGCCCCTCCTCCTCCTCCTCCTG CATTATTACCATGAAAGGCCTCCCCGATCCACAACATACCATCAAACGTA TCTGCGCCACGAACAAATACGCCAAATCCTCCTACGAAATAGGCAAGAAG TTCGAAGCTGGCATCTCTCTCGTTGGAACAGAAGTGGGGCCTGTTGCCTC TGGACAGTGTCAATTAAGAGACGCGTATTGTCGCGTGCGTGATGGGGAGC TATGGATTCATAATCTGTTCATTGGACCACACAAGACGACGGGAAAATAT TTCCAGCATGTTGAGAAGAGGCCACGGCGGCTGTTGGTTCATAAAAAAGA GGTCTTGGAGCTGATGTATGCGTCGGCCAGGGATGGGCAGACCATTGTAC CATTGAAGATTTATTTGACAGCAACGCACAGGATAAAGGTGGAAGTGGCC ATAGGACGGGGCATCAAGAAATACGACAAGCGTGAGGCGGCAAAGGAACG GGAGATCAAGCGGGGCTTCGAGAAGATTATGAAAAGTTTCTAA back to top
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