NO01G03890, NO01G03890 (gene) Nannochloropsis oceanica

Overview
NameNO01G03890
Unique NameNO01G03890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1380
Alignment locationchr1:1038894..1040273 +

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Properties
Property NameValue
DescriptionSsrA-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1038894..1040273 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR023620SmpB
IPR000037SsrA-bd_prot
Homology
[Close]
BLAST of NO01G03890 vs. NCBI_GenBank
Match: XP_005854882.1 (hypothetical protein NGA_2084900, partial [Nannochloropsis gaditana CCMP526] >EKU21478.1 hypothetical protein NGA_2084900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 302.0 bits (772), Expect = 2.000e-78
Identity = 142/162 (87.65%), Postives = 153/162 (94.44%), Query Frame = 0 
Query:  119 ITMKGLPDPQHTIKRICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMKSF 281
            + MKG  DP HT+KRICATNKYAKSSYEIGKKFEAGISLVGTE+GPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQH EKRPRRLLVHKKE+LEL YAS RDGQTIVPL IYLTATHR+KVEVAIGRGIKKYDKREA K+REIKRGFE+++K++
Sbjct:  116 LVMKGAADPHHTVKRICATNKYAKSSYEIGKKFEAGISLVGTEIGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHAEKRPRRLLVHKKEILELKYASDRDGQTIVPLCIYLTATHRVKVEVAIGRGIKKYDKREAVKQREIKRGFERLLKTY 277
[Close]
BLAST of NO01G03890 vs. NCBI_GenBank
Match: EWM29323.1 (binding protein [Nannochloropsis gaditana])

HSP 1 Score: 302.0 bits (772), Expect = 2.000e-78
Identity = 142/162 (87.65%), Postives = 153/162 (94.44%), Query Frame = 0 
Query:  119 ITMKGLPDPQHTIKRICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMKSF 281
            + MKG  DP HT+KRICATNKYAKSSYEIGKKFEAGISLVGTE+GPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQH EKRPRRLLVHKKE+LEL YAS RDGQTIVPL IYLTATHR+KVEVAIGRGIKKYDKREA K+REIKRGFE+++K++
Sbjct:  102 LVMKGAADPHHTVKRICATNKYAKSSYEIGKKFEAGISLVGTEIGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHAEKRPRRLLVHKKEILELKYASDRDGQTIVPLCIYLTATHRVKVEVAIGRGIKKYDKREAVKQREIKRGFERLLKTY 263
[Close]
BLAST of NO01G03890 vs. NCBI_GenBank
Match: WP_014103225.1 (SsrA-binding protein SmpB [Micavibrio aeruginosavorus] >AEP10002.1 ssrA-binding protein [Micavibrio aeruginosavorus ARL-13])

HSP 1 Score: 142.1 bits (357), Expect = 2.600e-30
Identity = 66/150 (44.00%), Postives = 99/150 (66.00%), Query Frame = 0 
Query:  130 TIKRICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMKS 280
            ++ +    N+ A+  Y + +KF+AGI L GTEV  +  GQC L +A+    DGE+W++N +I  ++  G + QH  +RPRRLL+ KKE+  LM A  RDG TIVP+K+Y  A    KVE+A+ +G K+YDKRE +KER+  R  ++++KS
Sbjct:   12 SVNQTVTDNRRARFDYHLEEKFDAGIELTGTEVKSLRHGQCSLNEAFAGDHDGEIWLYNCYIAEYQQAGTHLQHAPRRPRRLLLKKKEIHRLMGAVTRDGYTIVPVKLYFNAKGLAKVEIALAKGKKQYDKRETSKERDWGRQKQRLLKS 161
[Close]
BLAST of NO01G03890 vs. NCBI_GenBank
Match: WP_015467946.1 (SsrA-binding protein SmpB [Micavibrio aeruginosavorus] >AGH98414.1 tmRNA-binding protein SmpB [Micavibrio aeruginosavorus EPB])

HSP 1 Score: 141.0 bits (354), Expect = 5.800e-30
Identity = 65/150 (43.33%), Postives = 98/150 (65.33%), Query Frame = 0 
Query:  130 TIKRICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMKS 280
            ++ +    N+ A+  Y + +KF+AGI L GTEV  +  GQC L +A+    DGE+W++N +I  ++  G + QH  +RPRRLL+ KKE+  LM A  RDG TIVP+K+Y       KVE+A+ +G K+YDKRE +KER+  R  ++++KS
Sbjct:   12 SVNQTVTDNRRARFDYHLEEKFDAGIELTGTEVKSLRHGQCSLNEAFAADHDGEIWLYNCYIAEYQQAGTHLQHAPRRPRRLLLKKKEIHRLMGAVTRDGYTIVPVKLYFNGKGLAKVEIALAKGKKQYDKRETSKERDWGRQKQRLLKS 161
[Close]
BLAST of NO01G03890 vs. NCBI_GenBank
Match: WP_015219710.1 (SsrA-binding protein SmpB [Cyanobacterium aponinum] >AFZ53985.1 SsrA-binding protein [Cyanobacterium aponinum PCC 10605] >PHV61342.1 SsrA-binding protein SmpB [Cyanobacterium aponinum IPPAS B-1201])

HSP 1 Score: 138.7 bits (348), Expect = 2.900e-29
Identity = 68/148 (45.95%), Postives = 99/148 (66.89%), Query Frame = 0 
Query:  133 RICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMKSF 281
            +I + N+ A+  YEI + +EAG+ LVGTEV  + +G+  LRD Y  +R+GE W+ N+ I P+ TTGKYF H  KR R+LL+HKKE+ +L+ A    G T+VPLK+YL     +KV + +G+G K +DKRE  K RE +R  ++ +K F
Sbjct:    6 KIISDNRQARYLYEILETYEAGVQLVGTEVKSIRAGRVNLRDGYALIRNGEAWLTNVHISPYDTTGKYFNHEPKRDRKLLLHKKEINKLIGALQEKGLTLVPLKMYLRG-EWVKVSLGLGKGKKLHDKRETIKRREDQREMQRALKRF 152
[Close]
BLAST of NO01G03890 vs. NCBI_GenBank
Match: WP_036930740.1 (SsrA-binding protein SmpB [Prochlorococcus marinus])

HSP 1 Score: 138.3 bits (347), Expect = 3.700e-29
Identity = 68/141 (48.23%), Postives = 95/141 (67.38%), Query Frame = 0 
Query:  138 NKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMK 279
            N+YAK  YEI +  EAGI L+GTEV  + +G   LRD YC  RDGE+ + N+ I PHK  G +F H   R R+LL+HKKE+++L Y + + G TI+PL IYL  +  IK+ + IG+G K +DKR+A K+R+IKR  +  +K
Sbjct:   24 NRYAKFQYEILETIEAGIELLGTEVKSIRNGSVNLRDGYCSFRDGEILLLNVHISPHKNVGPFFNHDPLRNRKLLLHKKEIVKLKYNTEKKGLTIIPLSIYLKGSW-IKLTIGIGKGKKLHDKRQADKQRDIKREIKTALK 163
[Close]
BLAST of NO01G03890 vs. NCBI_GenBank
Match: Q7UZP2.1 (RecName: Full=SsrA-binding protein; AltName: Full=Small protein B >CAE20075.1 tmRNA binding protein SmpB [Prochlorococcus marinus subsp. pastoris str. CCMP1986] >KGF86864.1 tmRNA-binding protein SmpB [Prochlorococcus marinus str. EQPAC1])

HSP 1 Score: 138.3 bits (347), Expect = 3.700e-29
Identity = 68/141 (48.23%), Postives = 95/141 (67.38%), Query Frame = 0 
Query:  138 NKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMK 279
            N+YAK  YEI +  EAGI L+GTEV  + +G   LRD YC  RDGE+ + N+ I PHK  G +F H   R R+LL+HKKE+++L Y + + G TI+PL IYL  +  IK+ + IG+G K +DKR+A K+R+IKR  +  +K
Sbjct:   35 NRYAKFQYEILETIEAGIELLGTEVKSIRNGSVNLRDGYCSFRDGEILLLNVHISPHKNVGPFFNHDPLRNRKLLLHKKEIVKLKYNTEKKGLTIIPLSIYLKGSW-IKLTIGIGKGKKLHDKRQADKQRDIKREIKTALK 174
[Close]
BLAST of NO01G03890 vs. NCBI_GenBank
Match: WP_023073730.1 (SsrA-binding protein SmpB [Leptolyngbya sp. Heron Island J] >ESA35404.1 hypothetical protein N836_11915 [Leptolyngbya sp. Heron Island J])

HSP 1 Score: 136.7 bits (343), Expect = 1.100e-28
Identity = 66/147 (44.90%), Postives = 100/147 (68.03%), Query Frame = 0 
Query:  133 RICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMKS 280
            ++ A N+ A+ +YEI   +EAGI L GTEV  + +G+  LRD Y +V++GE+W+ N+ I PH  T + + H  +RPRRLL+HK E+ +L+      G T+VPLK+YL    R+KV +AIGRG K +DKRE+ K+++ KR   ++MK+
Sbjct:   15 KVMADNRQARFTYEILDSYEAGIELKGTEVKSIRAGKVNLRDGYAQVKNGEVWLLNVHISPHNMTNQAYNHEPRRPRRLLLHKAEIRKLIGKVEEKGLTLVPLKLYL-KKGRVKVNIAIGRGKKLHDKRESLKQKQEKRDIARMMKN 160
[Close]
BLAST of NO01G03890 vs. NCBI_GenBank
Match: A2BZ01.1 (RecName: Full=SsrA-binding protein; AltName: Full=Small protein B >ABM73012.1 tmRNA binding protein SmpB [Prochlorococcus marinus str. MIT 9515])

HSP 1 Score: 136.3 bits (342), Expect = 1.400e-28
Identity = 67/143 (46.85%), Postives = 94/143 (65.73%), Query Frame = 0 
Query:  136 ATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMK 279
            A N+YAK  YEI +  EAGI L+GTEV  + +G   LRD YC  RDGE+ + N+ I PHK  G +F H   R R+LL+HKKE+ +L   + + G TI+PL IYL  +  IK+ + IG+G K +DKR+A K+++IKR  +  +K
Sbjct:   23 AENRYAKFQYEISETIEAGIELLGTEVKSIRNGNVNLRDGYCSFRDGEILLLNVHISPHKNVGSFFNHDPLRNRKLLLHKKEIFKLKSNTEKKGLTIIPLSIYLKGSW-IKLTIGIGKGKKLHDKRQADKQKDIKREIKTALK 164
[Close]
BLAST of NO01G03890 vs. NCBI_GenBank
Match: WP_006515815.1 (SsrA-binding protein SmpB [Leptolyngbya sp. PCC 7375] >EKV01418.1 SsrA-binding protein [Leptolyngbya sp. PCC 7375])

HSP 1 Score: 136.3 bits (342), Expect = 1.400e-28
Identity = 66/147 (44.90%), Postives = 100/147 (68.03%), Query Frame = 0 
Query:  133 RICATNKYAKSSYEIGKKFEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKYFQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVAIGRGIKKYDKREAAKEREIKRGFEKIMKS 280
            ++ A N+ A+ +YEI   +EAGI L GTEV  + +G+  LRD Y +V++GE+W+ N+ I PH  T + + H  +RPRRLL+HK E+ +L+      G T+VPLK+YL    R+KV +AIGRG K +DKRE+ K+++ KR   ++MK+
Sbjct:   15 KVMADNRQARFTYEILDSYEAGIELKGTEVKSIRAGKVNLRDGYAQVKNGEVWLLNVHISPHDMTNQAYNHEPRRPRRLLLHKAEIRKLIGKVEEKGLTLVPLKLYL-KKGRVKVNIAIGRGKKLHDKRESLKQKQEKRDIARMMKN 160
The following BLAST results are available for this feature:
BLAST of NO01G03890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854882.12.000e-7887.65hypothetical protein NGA_2084900, partial [Nannoch... [more]
EWM29323.12.000e-7887.65binding protein [Nannochloropsis gaditana][more]
WP_014103225.12.600e-3044.00SsrA-binding protein SmpB [Micavibrio aeruginosavo... [more]
WP_015467946.15.800e-3043.33SsrA-binding protein SmpB [Micavibrio aeruginosavo... [more]
WP_015219710.12.900e-2945.95SsrA-binding protein SmpB [Cyanobacterium aponinum... [more]
WP_036930740.13.700e-2948.23SsrA-binding protein SmpB [Prochlorococcus marinus... [more]
Q7UZP2.13.700e-2948.23RecName: Full=SsrA-binding protein; AltName: Full=... [more]
WP_023073730.11.100e-2844.90SsrA-binding protein SmpB [Leptolyngbya sp. Heron ... [more]
A2BZ01.11.400e-2846.85RecName: Full=SsrA-binding protein; AltName: Full=... [more]
WP_006515815.11.400e-2844.90SsrA-binding protein SmpB [Leptolyngbya sp. PCC 73... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007906NSK007906Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03890.1NO01G03890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577222gene_400Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100136g10gene1306Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03890.1NO01G03890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03890 ID=NO01G03890|Name=NO01G03890|organism=Nannochloropsis oceanica|type=gene|length=1380bp
GGTGGATTTGAGCTCTTCACCTTTTTTGCTATAATCGATTCGGCGAACCC
CGACCCGGAAATAGAGGGCAGGGGGATAACTGAAAGCCAAATATAAACCC
ACGCCTAAGGGTCGCAAAAGTCATTTAGAGGACAAGCACACAGCATTCGG
CAGATCCATGGACCCGCGCTTGAGCCTCTTGTATTGGTTTTCGTGAGGTT
TGGCAGAAAGGAGATGTAGTATATGTGATACACCTCACCGGAGCTTCTTA
CCACCACCACACCGACGTAGCGTACCGCCCGCGACATCTTCGGCATGTGG
CCATTGTCAAATAGCAGTCCCCATGCCTGGGTCAGGACGAGACCACGGAG
CGCTGCCACGCCGTCTGCGTCCTCCTCCTCTTCCTCCTCCTCGTGGTCAT
CCTCGTGGTCATCATCAAACCTCCCCTTCCCCCTCTTCATGCTCGGATTT
GTCCTCCTCACCAGTGCCTGCTGTCACGCTATCCAGTACAACACTCTTTC
CACTAAAGGACTACAACGATGTTCACCATCATCCCAGGTATCGACTGCTT
TCGGTTCCTCGACTGCATTTGGTACCTCGCCTCCCACCCTTTTCGGTCCT
ATCTTTCCACCCTTACCCTGCCGCCCCTCCTCCTCCTCCTCCTGCATTAT
TACCATGAAAGGCCTCCCCGATCCACAACATACCATCAAACGTATCTGCG
CCACGAACAAATACGCCAAATCCTCCTACGAAATAGGCAAGAAGTTCGAA
GCTGGCATCTCTCTCGTTGGAACAGAAGTGGGGCCTGTTGCCTCTGGACA
GTGTCAATTAAGAGACGCGTATTGTCGCGTGCGTGATGGGGAGCTATGGA
TTCATAATCTGTTCATTGGACCACACAAGACGACGGGAAAATATTTCCAG
CATGTTGAGAAGAGGCCACGGCGGCTGTTGGTTCATAAAAAAGAGGTCTT
GGAGCTGATGTATGCGTCGGCCAGGGATGGGCAGACCATTGTACCATTGA
AGATTTATTTGACAGCAACGCACAGgtacgtacccaaaaaaaagaaaaga
gggtaagatggcaggcagtttcgattgctaagacgtgcgctttttgtttg
tctcatctctcttgtctctttcttcgccttcctccttccttgttatgtta
ttccagGATAAAGGTGGAAGTGGCCATAGGACGGGGCATCAAGAAATACG
ACAAGCGTGAGGCGGCAAAGGAACGGGAGATCAAGCGGGGCTTCGAGAAG
ATTATGAAAAGTTTCTAACTTTGCTTGTTTTTGGAATGAAAAGGACCGGA
AAATAATCAAAAAATGAATCAAATACGCACATTAATTAAATGAGCATGGT
CACCCAGCCTTACGGTCAGCTAGGAAAAAA
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protein sequence of NO01G03890.1

>NO01G03890.1-protein ID=NO01G03890.1-protein|Name=NO01G03890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MWPLSNSSPHAWVRTRPRSAATPSASSSSSSSSWSSSWSSSNLPFPLFML
GFVLLTSACCHAIQYNTLSTKGLQRCSPSSQVSTAFGSSTAFGTSPPTLF
GPIFPPLPCRPSSSSSCIITMKGLPDPQHTIKRICATNKYAKSSYEIGKK
FEAGISLVGTEVGPVASGQCQLRDAYCRVRDGELWIHNLFIGPHKTTGKY
FQHVEKRPRRLLVHKKEVLELMYASARDGQTIVPLKIYLTATHRIKVEVA
IGRGIKKYDKREAAKEREIKRGFEKIMKSF*
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Synonyms
Publications