NO01G03870, NO01G03870 (gene) Nannochloropsis oceanica

Overview
NameNO01G03870
Unique NameNO01G03870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2272
Alignment locationchr1:1034131..1036402 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1034131..1036402 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G03870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007910NSK007910Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03870.1NO01G03870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03870.1NO01G03870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03870 ID=NO01G03870|Name=NO01G03870|organism=Nannochloropsis oceanica|type=gene|length=2272bp
ATGGAGGACTCCAATCGCACGTCTCGCAGCGCCCACACACCTGCAACGCG
TGATAACCATATGCATTTCTCACGGATGGACCGAGGATTGCTTGCTGACA
AAGgtgtgttgcgacctctcttccctcccctgtcttccttttgttccaag
tttctgtcaccattgcacgcggaggaatcgccatgcatctagagagcacg
taaaaagtggtgatctactcaaagcatacgggaagcaaatagtagtgtta
gcctgccttcacgtgttttagtgttcgtcttcttcgttcattgtgcaaga
gcacctttttctcttggtcaccaggccaagatgcaactcctcatcccctt
tgaatgaaaaaagaaagttgcgggcaacgcagacatctctcgatcgaaga
aaactttccttctctcttcctttttccacactgccttcttacacaacagA
TGGTGCCCTTGAGACGCACGTGCACTTGCGCCGCACCGGCAGCGTGGATA
TCTTCGCCGGTCAACCCTCCCCGTCGTCGCACCACCGTCAACAGCAGCAA
CAGGAGGACACGGACAGCTGTCGTGCTCACGCCAATACCGCCAGTACCAC
CACTGATCTGGTAGGCACCACCAGCAGCGGCACTACCAGATTCACTGCCC
CCTCTCCGCCACCATCGGCGTTCTCCATCTTGCCGCCAGCATACCCTCCT
TCCTCTCACCCTCCCCATCAAACCCCGACCGTGAGTAAGAGTAGTACCGC
TGTCCTAAGTGCCCTACGTGCGCTGCAAGATAAGATTAAGCGCCTGGAGA
AAGAGCGGGCCGATGCCATTTGGGAGGTCGGCATGCTACGTCAGCAGCTC
GAGGGGGTGCAGCGTCGGGCGGAAGTTGAACGGCGGGAAGACGTGTTGGA
GCTACAAGAGCAATATTCTCACGTACAGGGTGCTTATGAGCGGCTGTTGT
CGGACAAGGAGGCAATGGAGAGCAAGCTAGTGCGCTCGGAGGAGAGACGT
GCTGTGCTCGTCCAGGAAGCAGGTCGACTGCGTGGGCAGTTGCTTGCGGA
GGAGGAAAGCCGCCGATTAGCTAAAGTAAGGGTACGCGGGATGGGGGCCC
GGATAAGCAAAATGGAGCACGCCGTCCAGAATCGAGGCGTTAAAGCCGAG
AATACGATCGCTGAGTTGCGTGAAACATTGGAGATAGAAACGGCTCGTCG
ACTTGAGCTGGAGGAACGCAATGAGAAATTTGGGGAGGTCTTACTGTCGG
TGTTGGACATGAACCAGGAAATTGCTAGGTATTATCCGGCACATGGAACC
AAGTCGCAGGGTACAGCCACCGCCACCACCAGCAGCAGCTGCTGCGACTA
TGCAGCTGCCCCGCGCACGGCTCCCAAACCCCGGTCCATTCGGACGAGCA
GCAGCAACAGCGGGGGGACCTTGCCCTTCTTGCCGGCGTCGCACCATCGG
ACATATAATCTCTTGGCCACACTCTCGCAGGCTGTGCGAGAATGCAAGCA
ACGGGAGCCTAAGCGGGTGTTGGATGCTTTGTATGAGTTGGTGCAGTTGG
AAACGGGCTCGGTCATGGGGCGGGAGGAGCGCTGCGCCTTCCCTCCCTCG
GGGCAATCTGCCGGGTCTGCTTCGACCTCCTTTCCCTCCACCACTCGGGC
ATGTGGTGGGCATGCGTCTCTTGCGAGGGGACGCCGTCCAACAGTTGCTG
CGGAATGTATGGAGGGGAAGCAACGACTGCAGCAGCAGCAGCAGCAGCAC
GACGCGGAAGAGCATGACAAGGAGGTGATTCTGGCGATGCAAGCCGAGTT
AAAGGAACTGGAGTATGTGTTGGAAGACGAGCTACGGGTTTTAAATCGTA
AATACGCGGGTATGGTTGAGCTGGCTCGGAGCGGGAGCAGAAGGACAGCT
GGGTCAGGAGGAGGAAGAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAG
GAGAGGAGTTTCGGGAGGAGGACTTGCGGGCATTGATTGAGGACATTCAT
CGGAAGGAGGCCGAGCTCAAGCATCTACGCCGGGCTTTGCGCTCGAAACG
AGGGCTCTGCCAATCACGGCATTACCATTACCCCACACAGCAACAACAGC
AGCAGCAGCAGGCGTCGTGCACAAGCCCGCGGGCAAAGGGCGCCGCACAG
CGTGTCCGAGAGCGCATGTCGCTTCTAAGTGGTATCCGGGACATGTCCGG
CTTGGCCGCAGCGGATAAATAA
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protein sequence of NO01G03870.1

>NO01G03870.1-protein ID=NO01G03870.1-protein|Name=NO01G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=642bp
MEDSNRTSRSAHTPATRDNHMHFSRMDRGLLADKDGALETHVHLRRTGSV
DIFAGQPSPSSHHRQQQQQEDTDSCRAHANTASTTTDLVGTTSSGTTRFT
APSPPPSAFSILPPAYPPSSHPPHQTPTVSKSSTAVLSALRALQDKIKRL
EKERADAIWEVGMLRQQLEGVQRRAEVERREDVLELQEQYSHVQGAYERL
LSDKEAMESKLVRSEERRAVLVQEAGRLRGQLLAEEESRRLAKVRVRGMG
ARISKMEHAVQNRGVKAENTIAELRETLEIETARRLELEERNEKFGEVLL
SVLDMNQEIARYYPAHGTKSQGTATATTSSSCCDYAAAPRTAPKPRSIRT
SSSNSGGTLPFLPASHHRTYNLLATLSQAVRECKQREPKRVLDALYELVQ
LETGSVMGREERCAFPPSGQSAGSASTSFPSTTRACGGHASLARGRRPTV
AAECMEGKQRLQQQQQQHDAEEHDKEVILAMQAELKELEYVLEDELRVLN
RKYAGMVELARSGSRRTAGSGGGRKGGGGGGGGGGGGGGGGGGGGGGGGG
GGEEFREEDLRALIEDIHRKEAELKHLRRALRSKRGLCQSRHYHYPTQQQ
QQQQQASCTSPRAKGAAQRVRERMSLLSGIRDMSGLAAADK*
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Synonyms
Publications