NO01G03780, NO01G03780 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G03780 vs. NCBI_GenBank
Match: XP_005854825.1 (20S proteasome subunit beta 7, partial [Nannochloropsis gaditana CCMP526] >EKU21537.1 20S proteasome subunit beta 7, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 367.5 bits (942), Expect = 3.400e-98 Identity = 182/211 (86.26%), Postives = 197/211 (93.36%), Query Frame = 0 Query: 29 TTNMFGVTVKNNGLTGTAAAGTATVAGAGPSKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELFHYLRAIFYSKRNKFNPLWNEVLVGGYKDGKPFLGHLDMIGTAFSDDVMATGFGSYLALPIMRKRWHENMTEGEARALLEDCMRVLFYRF 240 T+NMFGVTVKN+G+TGT GT AGP+KRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLN VG++TILGAGGEFSDFQAI E+LEK+ Q+D NA+DGF+HSPAELF+YLRAIFYSKRNKFNPLWNEVLVGG+KDGK FLGHLDMIGTAFSD+VMATGFGSYLALPIMRKRWH NMTEGEARALLEDCMRVLFYR+ Sbjct: 30 TSNMFGVTVKNSGMTGT---GTT----AGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRW 233
BLAST of NO01G03780 vs. NCBI_GenBank
Match: EWM29299.1 (proteasome subunit [Nannochloropsis gaditana]) HSP 1 Score: 367.5 bits (942), Expect = 3.400e-98 Identity = 182/211 (86.26%), Postives = 197/211 (93.36%), Query Frame = 0 Query: 29 TTNMFGVTVKNNGLTGTAAAGTATVAGAGPSKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELFHYLRAIFYSKRNKFNPLWNEVLVGGYKDGKPFLGHLDMIGTAFSDDVMATGFGSYLALPIMRKRWHENMTEGEARALLEDCMRVLFYRF 240 T+NMFGVTVKN+G+TGT GT AGP+KRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLN VG++TILGAGGEFSDFQAI E+LEK+ Q+D NA+DGF+HSPAELF+YLRAIFYSKRNKFNPLWNEVLVGG+KDGK FLGHLDMIGTAFSD+VMATGFGSYLALPIMRKRWH NMTEGEARALLEDCMRVLFYR+ Sbjct: 30 TSNMFGVTVKNSGMTGT---GTT----AGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRW 233
BLAST of NO01G03780 vs. NCBI_GenBank
Match: XP_009036878.1 (hypothetical protein AURANDRAFT_69799 [Aureococcus anophagefferens] >EGB08137.1 hypothetical protein AURANDRAFT_69799 [Aureococcus anophagefferens]) HSP 1 Score: 266.5 bits (680), Expect = 8.100e-68 Identity = 123/183 (67.21%), Postives = 149/183 (81.42%), Query Frame = 0 Query: 56 AGPSKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELFHYLRAIFYSKRNKFNPLWNEVLVGGYKDGKPFLGHLDMIGTAFSDDVMATGFGSYLALPIMRKRWHENMTEGEARALLEDCMRVLFYR 239 A P + T P+VTGTSVLG+KY GVMLAADTLASYGSLA FKDV R++ G +T++GA GE SD+ AI LE L +D+LNANDGF HSP E++ YLRA+ Y RNKFNPLWN ++VGGYKDGK FLG +D+ GTA+ DDV+ATGFG++LALPIMR +WH ++ EGEARALLEDC+RVLFYR Sbjct: 21 APPRQHTSRPIVTGTSVLGIKYKDGVMLAADTLASYGSLAMFKDVQRISKTGSYTLVGASGEMSDYHAILRKLEGLERDNLNANDGFEHSPVEIYSYLRAVMYQARNKFNPLWNSLVVGGYKDGKAFLGSVDLRGTAYEDDVIATGFGAHLALPIMRAKWHADIDEGEARALLEDCLRVLFYR 203
BLAST of NO01G03780 vs. NCBI_GenBank
Match: CBN73828.1 (20S proteasome beta subunit [Ectocarpus siliculosus]) HSP 1 Score: 252.3 bits (643), Expect = 1.600e-63 Identity = 123/192 (64.06%), Postives = 150/192 (78.12%), Query Frame = 0 Query: 48 AGTATVAGAGPSKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELFHYLRAIFYSKRNKFNPLWNEVLVGG-YKDGKPFLGHLDMIGTAFSDDVMATGFGSYLALPIMRKRWHENMTEGEARALLEDCMRVLFYR 239 AG AT A G + T P+VTGTSVLG+KY GVMLAADTLASYGSLAR+K+V RL VGE T++GA GE+SDFQ I E LE HQ D+N +DGF SPAE+++ LR I Y++RNKFNPLWN +L+ G KDG FLG +D IGT + D+++ATGFG +LALPI+RK+W ++ EGEARALLEDCMRVLFYR Sbjct: 13 AGHATAAMDGTRQHTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERLKPVGECTLIGASGEYSDFQHIMETLEDYHQYDVNMDDGFERSPAEIYNLLRTIMYNRRNKFNPLWNYLLIAGCKKDGTAFLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYR 204
BLAST of NO01G03780 vs. NCBI_GenBank
Match: KIJ37597.1 (hypothetical protein M422DRAFT_69290 [Sphaerobolus stellatus SS14]) HSP 1 Score: 222.6 bits (566), Expect = 1.300e-54 Identity = 103/183 (56.28%), Postives = 141/183 (77.05%), Query Frame = 0 Query: 60 KRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELFHYLRAIFYSKRNKFNPLWNEVLVGGYKDGKPFLGHLDMIGTAFSDDVMATGFGSYLALPIMRK----RWHENMTEGEARALLEDCMRVLFYR 239 +RT P+VTGTSVL ++Y GVM+AADTLASYGSLARFKDVTRL+ VG++TILGAGG+ SDFQ + +L L D+ DG A P+E+F L I Y +R+KFNPLWN +LVGG+KDGK FL ++D++GT + D+ +ATG+G+Y+ALP++R+ + EN++E EAR++L + M+VLFYR Sbjct: 39 QRTQQPIVTGTSVLAIRYKDGVMMAADTLASYGSLARFKDVTRLHAVGDYTILGAGGDMSDFQYLKSVLNDLIIDEFTQADGHALGPSEIFEVLSGIMYGRRSKFNPLWNSLLVGGFKDGKSFLAYVDLLGTTYKDNAIATGYGAYIALPLLREIMDAKGPENISEEEARSMLTESMKVLFYR 221
BLAST of NO01G03780 vs. NCBI_GenBank
Match: GAQ90311.1 (20S proteasome regulatory subunit beta protein [Klebsormidium nitens]) HSP 1 Score: 221.9 bits (564), Expect = 2.300e-54 Identity = 107/201 (53.23%), Postives = 142/201 (70.65%), Query Frame = 0 Query: 48 AGTATVAGA----------GPSKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELFHYLRAIFYSKRNKFNPLWNEVLVGGYKDGKPFLGHLDMIGTAFSDDVMATGFGSYLALPIMRKRWHENMTEGEARALLEDCMRVLFYR 239 AG ++V GA GP+K T+ P VTGTSVLG+KY GV++AADTLASYGS R+K + RL+ V +HT+LGA GE SD+Q I +LE+L DD N +DG +P E++ YL + Y++RNKF+PLWN +++GG K+GK FLG + MIG A+ DD +ATGFG++LA PI R +MTE E ALLE C+RVL+YR Sbjct: 16 AGESSVPGAAGHKFDVPVDGPAKHTNDPYVTGTSVLGIKYKDGVLIAADTLASYGSTIRYKSIERLHKVNDHTLLGASGEISDYQYISNLLEELATDDFNHDDGLQLNPKEIYAYLTRVLYNRRNKFDPLWNSLVIGGVKNGKSFLGVVGMIGAAYEDDHVATGFGNHLARPIFRSEHRPDMTEDEGVALLEKCLRVLYYR 216
BLAST of NO01G03780 vs. NCBI_GenBank
Match: XP_005835739.1 (20S proteasome subunit beta type 4 [Guillardia theta CCMP2712] >EKX48759.1 20S proteasome subunit beta type 4 [Guillardia theta CCMP2712]) HSP 1 Score: 221.1 bits (562), Expect = 3.900e-54 Identity = 100/183 (54.64%), Postives = 138/183 (75.41%), Query Frame = 0 Query: 56 AGPSKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELFHYLRAIFYSKRNKFNPLWNEVLVGGYKDGKPFLGHLDMIGTAFSDDVMATGFGSYLALPIMRKRWHENMTEGEARALLEDCMRVLFYR 239 A PS RT P+VTGT VLG+KYNGGVMLA DTL SYGSLARF+ V RL VG+ T++GA G+ SDFQ I ML ++ D +DG +P ++ YL + Y++RNKF+PLWNE++V G++DGKPFLG +D+IGT + DD++AT FG+Y+ LP+MRK N+++ EA+ ++E+C+RVL+YR Sbjct: 7 AEPSTRTQQPIVTGTGVLGIKYNGGVMLACDTLGSYGSLARFRTVKRLEKVGDFTVVGASGDLSDFQKISSMLREMSTSDSAYDDGCNMTPRDIHQYLGRVMYNRRNKFDPLWNELVVAGFRDGKPFLGAVDLIGTMYEDDIIATSFGNYVCLPLMRKA-GTNLSKEEAKQVMENCLRVLYYR 188
BLAST of NO01G03780 vs. NCBI_GenBank
Match: XP_002997003.1 (proteasome subunit beta, putative [Phytophthora infestans T30-4] >EEY70244.1 proteasome subunit beta, putative [Phytophthora infestans T30-4]) HSP 1 Score: 220.7 bits (561), Expect = 5.100e-54 Identity = 104/181 (57.46%), Postives = 132/181 (72.93%), Query Frame = 0 Query: 60 KRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELFHYLRAIFYSKRNKFNPLWNEVLVGGY--KDGKPFLGHLDMIGTAFSDDVMATGFGSYLALPIMRKRWHENMTEGEARALLEDCMRVLFYR 239 +RT SP+VTGTSV+ +KY GVM+AADTL SYGSLARF D RL V T+LGAGG+FSDFQ I + +++L D N +DG + E++HYL+ + Y +RNKF+PLWN V+VGG + GKPFLG + MIG AF D +ATGFG +L +P++RK W NM E +AR LLEDCMRV FYR Sbjct: 5 QRTQSPIVTGTSVIALKYKSGVMMAADTLGSYGSLARFTDQRRLTAVHNTTLLGAGGDFSDFQFIKDKMDELEVYDFNEDDGCDTTAPEIYHYLQRLLYHRRNKFDPLWNTVVVGGLNPETGKPFLGQITMIGLAFEGDYVATGFGHHLGMPLLRKHWRPNMEEADARNLLEDCMRVCFYR 185
BLAST of NO01G03780 vs. NCBI_GenBank
Match: XP_008910919.1 (hypothetical protein PPTG_15910 [Phytophthora parasitica INRA-310] >ETI39238.1 hypothetical protein F443_15185 [Phytophthora parasitica P1569] >ETK79445.1 hypothetical protein L915_14726 [Phytophthora parasitica] >ETL32857.1 hypothetical protein L916_14640 [Phytophthora parasitica] >ETL86117.1 hypothetical protein L917_14443 [Phytophthora parasitica] >ETM39266.1 hypothetical protein L914_14584 [Phytophthora parasitica] >ETN03692.1 hypothetical protein PPTG_15910 [Phytophthora parasitica INRA-310] >ETO67979.1 hypothetical protein F444_15163 [Phytophthora parasitica P1976] >ETP09150.1 hypothetical protein F441_14994 [Phytophthora parasitica CJ01A1] >ETP37182.1 hypothetical protein F442_15018 [Phytophthora parasitica P10297] >KUF77345.1 Proteasome subunit beta type [Phytophthora nicotianae] >KUF96789.1 KDEL-tailed cysteine endopeptidase CEP3 [Phytophthora nicotianae]) HSP 1 Score: 220.3 bits (560), Expect = 6.700e-54 Identity = 104/181 (57.46%), Postives = 133/181 (73.48%), Query Frame = 0 Query: 60 KRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELFHYLRAIFYSKRNKFNPLWNEVLVGGY--KDGKPFLGHLDMIGTAFSDDVMATGFGSYLALPIMRKRWHENMTEGEARALLEDCMRVLFYR 239 +RT SP+VTGTSV+ +KY GGVM+AADTL SYGSLARF D RL V T+LGAGG+FSDFQ I + +++L D N +DG + E++HYL+ + Y +RNKF+PLWN V+VGG + GKPFLG + MIG AF D +ATGFG +L +P++RK W +M E +AR LLEDCMRV FYR Sbjct: 5 QRTQSPIVTGTSVIALKYKGGVMMAADTLGSYGSLARFTDQRRLTAVHNTTLLGAGGDFSDFQFIKDKMDELEVYDFNQDDGCDTTAPEIYHYLQRLLYHRRNKFDPLWNTVVVGGLNPETGKPFLGQVTMIGLAFEGDYIATGFGHHLGMPLLRKHWRPDMEETDARKLLEDCMRVCFYR 185
BLAST of NO01G03780 vs. NCBI_GenBank
Match: OWZ04238.1 (Proteasome subunit beta [Phytophthora megakarya]) HSP 1 Score: 220.3 bits (560), Expect = 6.700e-54 Identity = 104/181 (57.46%), Postives = 133/181 (73.48%), Query Frame = 0 Query: 60 KRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELFHYLRAIFYSKRNKFNPLWNEVLVGGY--KDGKPFLGHLDMIGTAFSDDVMATGFGSYLALPIMRKRWHENMTEGEARALLEDCMRVLFYR 239 +RT SP+VTGTSV+ +KY GGV++AADTL SYGSLARF D RL V T+LGAGG+FSDFQ I + +++L D N +DG + E++HYL+ + Y +RNKF+PLWN V+VGG + GKPFLG + MIG AF D +ATGFG +L +P++RK W +M E EAR LLEDCMRV FYR Sbjct: 5 QRTQSPIVTGTSVIALKYKGGVLMAADTLGSYGSLARFTDQRRLTAVHNSTLLGAGGDFSDFQFIKDKMDELEVYDYNQDDGCDTTAPEIYHYLQRLLYHRRNKFDPLWNTVVVGGLNPETGKPFLGQVTMIGLAFEGDFIATGFGHHLGMPLLRKHWTPDMEEAEARKLLEDCMRVCFYR 185 The following BLAST results are available for this feature:
BLAST of NO01G03780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G03780 ID=NO01G03780|Name=NO01G03780|organism=Nannochloropsis oceanica|type=gene|length=2183bpback to top protein sequence of NO01G03780.1 >NO01G03780.1-protein ID=NO01G03780.1-protein|Name=NO01G03780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bpback to top protein sequence of NO01G03780.2 >NO01G03780.2-protein ID=NO01G03780.2-protein|Name=NO01G03780.2|organism=Nannochloropsis oceanica|type=polypeptide|length=252bpback to top Synonyms
Publications
|