NO01G03780.1, NO01G03780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03780.1
Unique NameNO01G03780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1259
Alignment locationchr1:1016903..1019085 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1016903..1019085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03780.1 vs.
Match: XP_005854825.1 (20S proteasome subunit beta 7, partial [Nannochloropsis gaditana CCMP526]; EKU21537.1 20S proteasome subunit beta 7, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 365.2 bits (936), Expect = 1.900e-97
Identity = 185/233 (79.40%), Postives = 203/233 (87.12%), Query Frame = 0 
Query:    6 TVSSHVYTTSLLLLLLIVSVQSETTNMFGVTVKNNGLTGTAAAGTATVAGAGPSKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELFHYLRAIFYSKRNKFNPLWNEVLVGGYKDGKPFLGHLDMIGTAFSDDVMATGFGSYLALPIMRKRWHENMTEGEARALLEDCMRVLFYR 239
            ++S    T S  LL ++      T+NMFGVTVKN+G+TGT          AGP+KRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLN VG++TILGAGGEFSDFQAI E+LEK+ Q+D NA+DGF+HSPAELF+YLRAIFYSKRNKFNPLWNEVLVGG+KDGK FLGHLDMIGTAFSD+VMATGFGSYLALPIMRKRWH NMTEGEARALLEDCMRVLFYR
Sbjct:   12 SISLFFVTLSACLLQVVF-----TSNMFGVTVKNSGMTGTGTT-------AGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYR 232
The following BLAST results are available for this feature:
BLAST of NO01G03780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854825.11.900e-9779.4020S proteasome subunit beta 7, partial [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03780NO01G03780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03780.1NO01G03780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03780.1.cds1NO01G03780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03780.1.cds2NO01G03780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03780.1.cds3NO01G03780.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03780.1.cds4NO01G03780.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03780.1 ID=NO01G03780.1|Name=NO01G03780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1259bp
AACAATAGGAAAAGAAGAGAGAGTCTCGACTTCGTCGTCGACCCTTTTTC
CTCCGTGCTGCACGCTCCCGAATTCGAAGCGCCAGTGCATGCGAATCCAG
AAGACGGTTTCTAGTCACGTGTACACTACTAGCCTCTTACTACTCCTTCT
CATCGTCAGCGTTCAATCCGAAACGACCAACATGTTCGGCGTGACGGTGA
AGAACAATGGTCTTACCGGCACAGCTGCTGCTGGCACTGCCACTGTGGCC
GGGGCTGGCCCGAGCAAACGCACGCACTCCCCTATGGTGACAGGTACGTC
GGTACTGGGCGTTAAGTACAACGGTGGTGTGATGCTTGCCGCGGATACGT
TGGCCTCGTACGGTTCCTTGGCGCGATTCAAGGACGTGACGCGGTTGAAC
ACGGTGGGGGAGCATACCATTTTGGGGGCTGGAGGAGAATTTTCTGATTT
CCAGGCGATCGGGGAGATGCTCGAGAAGCTACACCAGGATGACTTGAATG
CCAATGATGGCTTCGCCCACTCCCCCGCCGAGCTATTTCATTACTTGAGG
GCAATTTTTTACAGCAAGCGAAACAAGTTCAATCCGTTGTGGAATGAGGT
GCTGGTGGGTGGGTACAAGGACGGCAAGCCTTTCCTCGGCCACCTGGACA
TGATCGGCACGGCATTCTCCGACGATGTGATGGCCACGGGCTTCGGGTCT
TACCTGGCGTTGCCCATTATGCGCAAACGATGGCACGAAAACATGACGGA
GGGGGAGGCCCGGGCGTTGTTGGAGGACTGCATGCGTGTGCTGTTCTACA
GGGACTGCCGTGCATTGAACAGGATACAGATCGCCAAGGCGGATGCGAGT
GGCGTGCTGGTCTCGCCGGCGTTTAAATTGGAGACAGTCTGGGACCTCGC
GTCGTTTTCGGCGCCCAAGGCAGGCATGGACTCGGACGGGTCCTGGTAGA
GGGAGGGAGAGAGGGAGGGAGGGAGGGAAGGGAGGGGAGAGGAGGCAAGG
AGAGAGAGAGAGTTGCTTACTTGGAATAGAGGCGGAATGGGGGGGGCAGG
GAGAGAGGGCGGGACGGAGAGGGCGGAAGGTAGAATGGAGGAAAAAGATT
TCACAAAAGAACAAGAAATCAAAAGAAGAAAGAATAAAAAAGAAAAAGAG
AATGAGGAAAAGGAAGAGTTCGAATCACCACACACTGGAAGAAGCACATG
TGCGCAGGGGCACACAAGAGAACGGCAACCAAAGCACTCAACACTTGAAT
CCATCGAAC
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protein sequence of NO01G03780.1

>NO01G03780.1-protein ID=NO01G03780.1-protein|Name=NO01G03780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MRIQKTVSSHVYTTSLLLLLLIVSVQSETTNMFGVTVKNNGLTGTAAAGT
ATVAGAGPSKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDV
TRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELF
HYLRAIFYSKRNKFNPLWNEVLVGGYKDGKPFLGHLDMIGTAFSDDVMAT
GFGSYLALPIMRKRWHENMTEGEARALLEDCMRVLFYRDCRALNRIQIAK
ADASGVLVSPAFKLETVWDLASFSAPKAGMDSDGSW*
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mRNA from alignment at chr1:1016903..1019085+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03780.1 ID=NO01G03780.1|Name=NO01G03780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2183bp|location=Sequence derived from alignment at chr1:1016903..1019085+ (Nannochloropsis oceanica)
AACAATAGGAAAAGAAGAGAGAGTCTCGACTTCGTCGTCGACCCTTTTTC
CTCCGTGCTGCACGCTCCCGAATTCGAAGCGCCAGTGCATGCGAATCCAG
AAGACGGTTTCTAGTCACGTGGTACGTCATTGTGTGGTGGCTTGTGGGTT
GATAAGGTGGTAATGGTAGTCGTGGTCGTGAGGTTGCTCTGGGGAAGAGG
GGCTGGAATTCGCTGCCACTGCCCGCATGTGATGATGTTGCCTGCCCGGG
GGAGAGACAAAGAGGATGGACCTGTGAAAATTCGTCGTCCTTTGAGGCTT
TGCTATGTTATCGTTCAGCGGCCTGTTGCCAGGAGCTGGCATGGTTGTGG
GGCGTCTGTTTTTTCATTGGCGGTCAGGTCTTACCTGCGCGTTGATGTGA
TGATGCCGCGGCGGGGACATGGCGGCAGCAGCTGCAACACTGCAAGAGTA
GCAGTGCATGTTCGTAATCCGTACCACATCATCGACGCACTGTTACGCAG
TGTCTTGTTGCCGAGTCTTGCACTTACGTCTGCTGCGCGCAAATATGCTG
TCTCACTCTCTCTTCTCCCTCTTCCCCCTCCTTTCTTCCTCCTTCCTTTC
CTTCTCTATTCCCAAAACAGTACACTACTAGCCTCTTACTACTCCTTCTC
ATCGTCAGCGTTCAATCCGAAACGACCAACATGTTCGGCGTGACGGTGAA
GAACAATGGTCTTACCGGCACAGCTGCTGCTGGCACTGCCACTGTGGCCG
GGGCTGGCCCGAGCAAACGCACGCACTCCCCTATGGTGACAGGTACGTCG
GTACTGGGCGTTAAGTACAACGGTGGTGTGATGCTTGCCGCGGATACGTT
GGCCTCGTACGGTTCCTTGGCGCGATTCAAGGACGTGACGCGGTTGAACA
CGGTGGGGGAGCATACCATTTTGGGGGCTGGAGGAGAATTTTCTGATTTC
CAGGCGATCGGGGAGATGCTCGAGAAGCTACACCAGGATGACTTGAATGC
CAATGATGGCTTCGCCCACTCCCCCGCCGAGCTATTTCATTACTTGAGGG
CAATTTTTTACAGCAAGCGAAACAAGTTCAATCCGTTGTGGAATGAGGTA
GGGAAGGAGGGAGGGAGGGAGGGACGGATGGAGGGAGGGAAGGGTGCATA
CAAGCCCTGTTTTTATTTCCTGAATTCAGGTCTTGCCTGATAGATACAAG
GAGGCCATGCCTTTGCTTTGTCACCTGGAGAGGATAGAGATGGAATTTGA
GAGGGTGTGCAGGCGATTGACGCTTCCTTCCTTCCCTCCCTCCCTCCCTC
CGTTGTTCCCTCACACGACCCCAGGTGCTGGTGGGTGGGTACAAGGACGG
CAAGCCTTTCCTCGGCCACCTGGACATGATCGGCACGGCATTCTCCGACG
ATGTGATGGCCACGGGCTTCGGGTCTTACCTGGCGTTGCCCATTATGCGC
AAACGATGGCACGAAAACATGACGGAGGGGGAGGCCCGGGCGTTGTTGGA
GGACTGCATGCGTGTGCTGTTCTACAGGTTCGTCGCCTTTTTGCACGTCC
GTGGGCGTAGTGAAGGCTAATAATCATCTTGGATGTACCCGGCCCCTTCC
TTTTTCATGTGTCGATGGGTCATTCGTTTAATCCATGCCTCCTCAAATCC
ACGCACTTCCCCCCCCCCCCCCCGGGCCTCTGCCTCCCTCCTTCCCTTTC
TTCCTTCTTTTTTGTTTTTCGACAGGGACTGCCGTGCATTGAACAGGATA
CAGATCGCCAAGGCGGATGCGAGTGGCGTGCTGGTCTCGCCGGCGTTTAA
ATTGGAGACAGTCTGGGACCTCGCGTCGTTTTCGGCGCCCAAGGCAGGCA
TGGACTCGGACGGGTCCTGGTAGAGGGAGGGAGAGAGGGAGGGAGGGAGG
GAAGGGAGGGGAGAGGAGGCAAGGAGAGAGAGAGAGTTGCTTACTTGGAA
TAGAGGCGGAATGGGGGGGGCAGGGAGAGAGGGCGGGACGGAGAGGGCGG
AAGGTAGAATGGAGGAAAAAGATTTCACAAAAGAACAAGAAATCAAAAGA
AGAAAGAATAAAAAAGAAAAAGAGAATGAGGAAAAGGAAGAGTTCGAATC
ACCACACACTGGAAGAAGCACATGTGCGCAGGGGCACACAAGAGAACGGC
AACCAAAGCACTCAACACTTGAATCCATCGAAC
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Coding sequence (CDS) from alignment at chr1:1016903..1019085+

>NO01G03780.1 ID=NO01G03780.1|Name=NO01G03780.1|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at chr1:1016903..1019085+ (Nannochloropsis oceanica)
ATGCGAATCCAGAAGACGGTTTCTAGTCACGTGTACACTACTAGCCTCTT
ACTACTCCTTCTCATCGTCAGCGTTCAATCCGAAACGACCAACATGTTCG
GCGTGACGGTGAAGAACAATGGTCTTACCGGCACAGCTGCTGCTGGCACT
GCCACTGTGGCCGGGGCTGGCCCGAGCAAACGCACGCACTCCCCTATGGT
GACAGGTACGTCGGTACTGGGCGTTAAGTACAACGGTGGTGTGATGCTTG
CCGCGGATACGTTGGCCTCGTACGGTTCCTTGGCGCGATTCAAGGACGTG
ACGCGGTTGAACACGGTGGGGGAGCATACCATTTTGGGGGCTGGAGGAGA
ATTTTCTGATTTCCAGGCGATCGGGGAGATGCTCGAGAAGCTACACCAGG
ATGACTTGAATGCCAATGATGGCTTCGCCCACTCCCCCGCCGAGCTATTT
CATTACTTGAGGGCAATTTTTTACAGCAAGCGAAACAAGTTCAATCCGTT
GTGGAATGAGGTGCTGGTGGGTGGGTACAAGGACGGCAAGCCTTTCCTCG
GCCACCTGGACATGATCGGCACGGCATTCTCCGACGATGTGATGGCCACG
GGCTTCGGGTCTTACCTGGCGTTGCCCATTATGCGCAAACGATGGCACGA
AAACATGACGGAGGGGGAGGCCCGGGCGTTGTTGGAGGACTGCATGCGTG
TGCTGTTCTACAGGGACTGCCGTGCATTGAACAGGATACAGATCGCCAAG
GCGGATGCGAGTGGCGTGCTGGTCTCGCCGGCGTTTAAATTGGAGACAGT
CTGGGACCTCGCGTCGTTTTCGGCGCCCAAGGCAGGCATGGACTCGGACG
GGTCCTGGTAG
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Synonyms
Publications