NO01G03720, NO01G03720 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G03720 vs. NCBI_GenBank
Match: EWM29300.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana]) HSP 1 Score: 379.8 bits (974), Expect = 6.100e-102 Identity = 186/219 (84.93%), Postives = 201/219 (91.78%), Query Frame = 0 Query: 1 MRGCWGLASFSPILLLLCLAKSAEAQAYGQPQYQQQRPRAEFRDIGRKEPGKFWGMMKTGAVGAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQRKGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKIAEFKLPDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFAEWKKFIEDLEKSQQAEEGL 220 MRGCW +AS +P+LL+ CLA+S +AQ Y Q Q RPR EFRDIGRK+ G+FWGMMKTGAVGA+ASWSFGQLYYRWQAKRLK+AHQKKSDKLIASYQQRK AIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRK+AEFKLPDANNDNKISRAEF+AYLRSYFAAHPELA+VEYPSFDDFDLDGSGLVSFAEWK+FIE+LEK Q EE L Sbjct: 1 MRGCWSIASLTPVLLVACLAESVKAQVYEQQQXXXXRPRPEFRDIGRKDSGRFWGMMKTGAVGALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERL 219
BLAST of NO01G03720 vs. NCBI_GenBank
Match: OEU18463.1 (hypothetical protein FRACYDRAFT_260404 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 84.0 bits (206), Expect = 6.900e-13 Identity = 53/162 (32.72%), Postives = 86/162 (53.09%), Query Frame = 0 Query: 57 MKTGAVGAVASWSFGQLYYRWQA-KRLKKAHQKKSDKLIASYQQRKGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKIAEFKLPDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFAEWKKFIEDLEKSQQAEE 218 MK A G + +W G ++ +A K LK+ H+ + KL + Y V + G+ L+ + + L+ + E E + +R EFK PD ++D++ISRAEF Y++ Y + +P L E +YP F+DFD DG+G VSF E+ + + + EE Sbjct: 86 MKLVATG-ITAWVLGAKFHVGRATKELKRKHKSEQKKLYSQYYND----VYKLGDQNSLLQEQIEDLTELVQKTE---SKAELEALQRDYDEFKQPDLDSDDRISRAEFSMYVKDYLSNYPGLTEKDYPKFEDFDHDGNGFVSFEEYSTQMAVQAEQAELEE 239
BLAST of NO01G03720 vs. NCBI_GenBank
Match: XP_002287175.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94618.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 79.3 bits (194), Expect = 1.700e-11 Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = 0 Query: 54 WGMMKTGAVGAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQRKGAIVAQFGEAYQALEVNAD---YVDSLIAQLEGILQHPETDPNKRKIAEFKLPDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFAEWKKFIEDLEKSQQAE 217 +G+ K A + +++ K+LKK HQ+ L Y + + Y+ E A+ +D L L + E + +R+ EFK PD + D++ISR EF+ Y+++Y + +P L E +YP F+DFD D G VSF E+ + + ++QQAE Sbjct: 92 FGLGKVALSSAFTYFLGAKIHSGRAVKKLKKKHQQDQKTLYTQY----------YNDIYKLEEQKAEQQYIIDQLKHSLSETTEKHEMEALQREYDEFKQPDVDGDDRISRTEFNMYVKNYLSNYPGLTEKDYPKFEDFDHDHDGYVSFQEYAQ--QMAVQAQQAE 245
BLAST of NO01G03720 vs. NCBI_GenBank
Match: CBJ49188.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 75.9 bits (185), Expect = 1.900e-10 Identity = 49/166 (29.52%), Postives = 80/166 (48.19%), Query Frame = 0 Query: 63 GAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQRKGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETD--------------PNKRKI-------AEFKLPDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFAEWKKFIE 208 GA+A S + AK+ K +++S IA + + + A++A+ + L + D + QL + D P R I EFK PD + DN IS+ EF Y+R Y + +P+ AE++ P F+DFDL+ G+VSF EW+ +++ Sbjct: 61 GAIAGASIEWWWSARSAKKGNKLLEQESAAFIAEWNKERDALMARRTYPIKLLAHEVEEADVQLMQLVAAAEDAGVDLGAGGSGLGGGATRPKARSIQQDNMEYEEFKQPDTDGDNVISKTEFYQYIRKYLSLYPDTAEMDIPHFEDFDLNNDGVVSFDEWQMYLD 226
BLAST of NO01G03720 vs. NCBI_GenBank
Match: XP_002296160.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64877.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 70.5 bits (171), Expect = 7.900e-9 Identity = 51/187 (27.27%), Postives = 95/187 (50.80%), Query Frame = 0 Query: 28 YGQPQYQQQRPRAEFRDIGRKEPGKFWGMMKTGAVGAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQRKGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKIAEFKLPDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFAEW-KKFIEDLEKSQ 214 YG Y E+ D G +P + +MK A A + G+++ + +LKK H + + Y+++ GA+ E+ + ++ S+IA+ +G+ +T P F + D + KIS+AEFD Y+R Y A +P L + P ++ FD D SG ++F E+ ++ +++++K+Q Sbjct: 33 YGSGGYDDS--MGEYFDKGAAQPAEN-NLMKMAAGSAFGWFLGGKIHSKRTVTKLKKKHASERAAFVQLYREQVGALQEFNKESARIIQA---MESSIIARQQGVPAEIDTVP-------FFMADTDGSKKISKAEFDRYVREYLANYPGLKPEDIPKWESFDHDRSGTITFDEYNQQMMKEIKKAQ 206
BLAST of NO01G03720 vs. NCBI_GenBank
Match: EJK73644.1 (hypothetical protein THAOC_04721 [Thalassiosira oceanica]) HSP 1 Score: 65.9 bits (159), Expect = 2.000e-7 Identity = 41/159 (25.79%), Postives = 84/159 (52.83%), Query Frame = 0 Query: 56 MMKTGAVGAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQRKGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKIAEFKLPDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFAEW-KKFIEDLEKSQ 214 +MK G + + G+++ + + +LKK H K+ + Y+++ GA+ E+ + ++ S+IA+ G+ +T P F + D + +IS+AEFD Y++ Y + +P L + P ++ FD D SG ++F E+ ++ +++ K+Q Sbjct: 752 LMKIAMGGGLGWFIGGRIHSKRSSTKLKKKHSKERAAFVQLYREQVGALQEFNKESARIIQA---MESSIIARQNGVPAEIDTVP-------FFMADTDGSKRISKAEFDRYVKDYLSNYPGLRPEDIPKWESFDHDYSGSITFEEYNQQMAKEIRKAQ 900 The following BLAST results are available for this feature:
BLAST of NO01G03720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G03720 ID=NO01G03720|Name=NO01G03720|organism=Nannochloropsis oceanica|type=gene|length=1790bpback to top protein sequence of NO01G03720.1 >NO01G03720.1-protein ID=NO01G03720.1-protein|Name=NO01G03720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bpback to top Synonyms
Publications
|