NO01G03720, NO01G03720 (gene) Nannochloropsis oceanica

Overview
NameNO01G03720
Unique NameNO01G03720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1790
Alignment locationchr1:996627..998416 +

Link to JBrowse

Properties
Property NameValue
DescriptionEF-Hand 1, calcium-binding site
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:996627..998416 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
Homology
BLAST of NO01G03720 vs. NCBI_GenBank
Match: EWM29300.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 379.8 bits (974), Expect = 6.100e-102
Identity = 186/219 (84.93%), Postives = 201/219 (91.78%), Query Frame = 0
Query:    1 MRGCWGLASFSPILLLLCLAKSAEAQAYGQPQYQQQRPRAEFRDIGRKEPGKFWGMMKTGAVGAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQRKGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKIAEFKLPDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFAEWKKFIEDLEKSQQAEEGL 220
            MRGCW +AS +P+LL+ CLA+S +AQ Y Q Q    RPR EFRDIGRK+ G+FWGMMKTGAVGA+ASWSFGQLYYRWQAKRLK+AHQKKSDKLIASYQQRK AIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRK+AEFKLPDANNDNKISRAEF+AYLRSYFAAHPELA+VEYPSFDDFDLDGSGLVSFAEWK+FIE+LEK Q  EE L
Sbjct:    1 MRGCWSIASLTPVLLVACLAESVKAQVYEQQQXXXXRPRPEFRDIGRKDSGRFWGMMKTGAVGALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERL 219          
BLAST of NO01G03720 vs. NCBI_GenBank
Match: OEU18463.1 (hypothetical protein FRACYDRAFT_260404 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 84.0 bits (206), Expect = 6.900e-13
Identity = 53/162 (32.72%), Postives = 86/162 (53.09%), Query Frame = 0
Query:   57 MKTGAVGAVASWSFGQLYYRWQA-KRLKKAHQKKSDKLIASYQQRKGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKIAEFKLPDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFAEWKKFIEDLEKSQQAEE 218
            MK  A G + +W  G  ++  +A K LK+ H+ +  KL + Y       V + G+    L+   + +  L+ + E      E +  +R   EFK PD ++D++ISRAEF  Y++ Y + +P L E +YP F+DFD DG+G VSF E+   +    +  + EE
Sbjct:   86 MKLVATG-ITAWVLGAKFHVGRATKELKRKHKSEQKKLYSQYYND----VYKLGDQNSLLQEQIEDLTELVQKTE---SKAELEALQRDYDEFKQPDLDSDDRISRAEFSMYVKDYLSNYPGLTEKDYPKFEDFDHDGNGFVSFEEYSTQMAVQAEQAELEE 239          
BLAST of NO01G03720 vs. NCBI_GenBank
Match: XP_002287175.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94618.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 79.3 bits (194), Expect = 1.700e-11
Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = 0
Query:   54 WGMMKTGAVGAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQRKGAIVAQFGEAYQALEVNAD---YVDSLIAQLEGILQHPETDPNKRKIAEFKLPDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFAEWKKFIEDLEKSQQAE 217
            +G+ K     A   +   +++     K+LKK HQ+    L   Y          + + Y+  E  A+    +D L   L    +  E +  +R+  EFK PD + D++ISR EF+ Y+++Y + +P L E +YP F+DFD D  G VSF E+ +  +   ++QQAE
Sbjct:   92 FGLGKVALSSAFTYFLGAKIHSGRAVKKLKKKHQQDQKTLYTQY----------YNDIYKLEEQKAEQQYIIDQLKHSLSETTEKHEMEALQREYDEFKQPDVDGDDRISRTEFNMYVKNYLSNYPGLTEKDYPKFEDFDHDHDGYVSFQEYAQ--QMAVQAQQAE 245          
BLAST of NO01G03720 vs. NCBI_GenBank
Match: CBJ49188.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.9 bits (185), Expect = 1.900e-10
Identity = 49/166 (29.52%), Postives = 80/166 (48.19%), Query Frame = 0
Query:   63 GAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQRKGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETD--------------PNKRKI-------AEFKLPDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFAEWKKFIE 208
            GA+A  S    +    AK+  K  +++S   IA + + + A++A+     + L    +  D  + QL    +    D              P  R I        EFK PD + DN IS+ EF  Y+R Y + +P+ AE++ P F+DFDL+  G+VSF EW+ +++
Sbjct:   61 GAIAGASIEWWWSARSAKKGNKLLEQESAAFIAEWNKERDALMARRTYPIKLLAHEVEEADVQLMQLVAAAEDAGVDLGAGGSGLGGGATRPKARSIQQDNMEYEEFKQPDTDGDNVISKTEFYQYIRKYLSLYPDTAEMDIPHFEDFDLNNDGVVSFDEWQMYLD 226          
BLAST of NO01G03720 vs. NCBI_GenBank
Match: XP_002296160.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64877.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 70.5 bits (171), Expect = 7.900e-9
Identity = 51/187 (27.27%), Postives = 95/187 (50.80%), Query Frame = 0
Query:   28 YGQPQYQQQRPRAEFRDIGRKEPGKFWGMMKTGAVGAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQRKGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKIAEFKLPDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFAEW-KKFIEDLEKSQ 214
            YG   Y       E+ D G  +P +   +MK  A  A   +  G+++ +    +LKK H  +    +  Y+++ GA+     E+ + ++       S+IA+ +G+    +T P       F + D +   KIS+AEFD Y+R Y A +P L   + P ++ FD D SG ++F E+ ++ +++++K+Q
Sbjct:   33 YGSGGYDDS--MGEYFDKGAAQPAEN-NLMKMAAGSAFGWFLGGKIHSKRTVTKLKKKHASERAAFVQLYREQVGALQEFNKESARIIQA---MESSIIARQQGVPAEIDTVP-------FFMADTDGSKKISKAEFDRYVREYLANYPGLKPEDIPKWESFDHDRSGTITFDEYNQQMMKEIKKAQ 206          
BLAST of NO01G03720 vs. NCBI_GenBank
Match: EJK73644.1 (hypothetical protein THAOC_04721 [Thalassiosira oceanica])

HSP 1 Score: 65.9 bits (159), Expect = 2.000e-7
Identity = 41/159 (25.79%), Postives = 84/159 (52.83%), Query Frame = 0
Query:   56 MMKTGAVGAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQRKGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKIAEFKLPDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFAEW-KKFIEDLEKSQ 214
            +MK    G +  +  G+++ +  + +LKK H K+    +  Y+++ GA+     E+ + ++       S+IA+  G+    +T P       F + D +   +IS+AEFD Y++ Y + +P L   + P ++ FD D SG ++F E+ ++  +++ K+Q
Sbjct:  752 LMKIAMGGGLGWFIGGRIHSKRSSTKLKKKHSKERAAFVQLYREQVGALQEFNKESARIIQA---MESSIIARQNGVPAEIDTVP-------FFMADTDGSKRISKAEFDRYVKDYLSNYPGLRPEDIPKWESFDHDYSGSITFEEYNQQMAKEIRKAQ 900          
The following BLAST results are available for this feature:
BLAST of NO01G03720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM29300.16.100e-10284.93EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
OEU18463.16.900e-1332.72hypothetical protein FRACYDRAFT_260404 [Fragilario... [more]
XP_002287175.11.700e-1130.72predicted protein [Thalassiosira pseudonana CCMP13... [more]
CBJ49188.11.900e-1029.52conserved unknown protein [Ectocarpus siliculosus][more]
XP_002296160.17.900e-927.27predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK73644.12.000e-725.79hypothetical protein THAOC_04721 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007929NSK007929Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03720.1NO01G03720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577157gene_382Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100152g9gene1324Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03720.1NO01G03720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03720 ID=NO01G03720|Name=NO01G03720|organism=Nannochloropsis oceanica|type=gene|length=1790bp
CAGCCCGTCTCACAATAGATTTGGAGAGCAAGCCCGGGGGCACCTTCATC
AATAGGAATGAGGGGCTGCTGGGGCCTTGCATCCTTCTCCCCCATCCTCC
TGCTCCTCTGCTTGGCTAAGAGTGCCGAAGCGCAAGCCTATGGGCAACCA
CAGTACCAGCAGCAGCGACCACGGGCTGAATTTCGGGACATTGGGCGGAA
AGAGCCCGGCAAgtacgtgttggacgggaagggatgttgaaggcgctggg
agcgtgggggaatgggtgaaatttggtgttctaatgcgtctcttgtactt
gaaaaaaagctcttcaaatagccctctgggattgttttgcaatcctcctc
atcttttgaatcttgtgtcctttcagcctcgaaccggcagtctcgtgacg
cggagggcatgtatgtgtgcgggacatggccccttttcctttccttttcc
cctttacctttgcgtcagtatctcctgtgtataaagcggggtcggtttct
taaacttctagtagtcagggcatttttggtccggagagatttgatcacta
cagtaccctgttcctgtggagtcatgcacacacacgcagacgtcccaatc
cttcctccctctctcccgccctcttttccttctttcccctctccatagAT
TTTGGGGCATGATGAAAACAGGCGCGGTCGGGGCAGTCGCCAGCTGGAGC
TTCGGCCAGCTCTACTACCGGTGGCAAGCCAAACGCCTCAAGAAGGCCCA
CCAAAAAAAAAGCGACAAGCTAATTGCCTCCTACCAACAACGGAAAGGAG
CGATTGTTGCCCAGTTTGGCGAGGCGTACCAAGCACTGGAAGTAAATGCT
GACTATGTTGATTCCTTAATTGCGCAACTAGAAGGAATTTTGCAGCACCC
CGAGACGGACCCCAATAAGAGGAAAATCGCCGAGTTTAAATTACCCGATG
CGAATAACGACAATAAAATCTCACGAGCAGAGTTTGATGCGTATCTGAGG
TCGTATTTTGCCGCCCACCCGGAGCTTGCTGAGGTGGAGTATCCTAGTTT
TGATGATTTTGATTTGGATGGGTCGGGGTTGGTGTCGTTTGCAGAGTGGA
AGAAGTTTATTGAGGATTTGGAAAAGAGTCAGCAGGCAGAGGAAGGCCTG
CTTTCGGCGGGGGGGGGAGGGGGAAGAGGGGGACGGCTCTAGGTTTGTGG
GATAGGATGTGGATGGGAGGAAGGGGTAGGTTGGTTAAGAGAGTCTGCGT
GTCTAGCAGGGATATTGGCGGAGGGAATGGAAGAAAGAAACGACAGGGGG
AGAGGAGACTCACGTGACACGACAAGCCGGTATTTTTATAGCAGTAGCGA
AAGCTAATCAAAGCGATGGAAAGACTTGGTTTGGTGCACCTATTTGACGT
TTCCATAGATGTCCAATCTTCCTTTTGAAGTTCGTCCAAAAAACAGCCGC
CTGAGGAGGAAAGGAGGGAGGAAGGGCCGGAGAGGACAGGACAAGTGCAT
ACGTGTTAAGAGGGAGGCGGGAGTATATATGGTAAGAGGACAGGCCCTTT
GCTAAGCTTTCATACAGGAATGAAAACTTGTCGGCCTGTAAAAGGCTGCG
CGATGATCAGGCGAGCGCTTTCTTTTTCTCCTTCTCCCTCCGGAAGTTGC
CTTAGAACTCATACCCCACCCCAGCGCCCCTCCCTCCCCTACTTTTTTTC
TTCCCTCCCCCCCTTGGAAGAGCACGCCCATGGCCTGGAGGGGGATTGAT
GAGAAGCAAAATAAGGAAAAAAGAAAACACGACATTAAAC
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protein sequence of NO01G03720.1

>NO01G03720.1-protein ID=NO01G03720.1-protein|Name=NO01G03720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MRGCWGLASFSPILLLLCLAKSAEAQAYGQPQYQQQRPRAEFRDIGRKEP
GKFWGMMKTGAVGAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQR
KGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKIAEFKL
PDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFA
EWKKFIEDLEKSQQAEEGLLSAGGGGGRGGRL*
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Synonyms
Publications