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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:996627..998416 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03720.1 vs.
Match: EWM29300.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana]) HSP 1 Score: 391.7 bits (1005), Expect = 1.600e-105 Identity = 194/232 (83.62%), Postives = 211/232 (90.95%), Query Frame = 0
Query: 1 MRGCWGLASFSPILLLLCLAKSAEAQAYGQPQYQQQRPRAEFRDIGRKEPGKFWGMMKTGAVGAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQRKGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKIAEFKLPDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFAEWKKFIEDLEKSQQAEEGLLSAGGGGGRGGRL 233
MRGCW +AS +P+LL+ CLA+S +AQ Y Q QYQQQRPR EFRDIGRK+ G+FWGMMKTGAVGA+ASWSFGQLYYRWQAKRLK+AHQKKSDKLIASYQQRK AIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRK+AEFKLPDANNDNKISRAEF+AYLRSYFAAHPELA+VEYPSFDDFDLDGSGLVSFAEWK+FIE+LEK Q EE L GG +G R+
Sbjct: 1 MRGCWSIASLTPVLLVACLAESVKAQVYEQQQYQQQRPRPEFRDIGRKDSGRFWGMMKTGAVGALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERL----AGGAKGSRM 228
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03720.1 ID=NO01G03720.1|Name=NO01G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1354bp CAGCCCGTCTCACAATAGATTTGGAGAGCAAGCCCGGGGGCACCTTCATC AATAGGAATGAGGGGCTGCTGGGGCCTTGCATCCTTCTCCCCCATCCTCC TGCTCCTCTGCTTGGCTAAGAGTGCCGAAGCGCAAGCCTATGGGCAACCA CAGTACCAGCAGCAGCGACCACGGGCTGAATTTCGGGACATTGGGCGGAA AGAGCCCGGCAAATTTTGGGGCATGATGAAAACAGGCGCGGTCGGGGCAG TCGCCAGCTGGAGCTTCGGCCAGCTCTACTACCGGTGGCAAGCCAAACGC CTCAAGAAGGCCCACCAAAAAAAAAGCGACAAGCTAATTGCCTCCTACCA ACAACGGAAAGGAGCGATTGTTGCCCAGTTTGGCGAGGCGTACCAAGCAC TGGAAGTAAATGCTGACTATGTTGATTCCTTAATTGCGCAACTAGAAGGA ATTTTGCAGCACCCCGAGACGGACCCCAATAAGAGGAAAATCGCCGAGTT TAAATTACCCGATGCGAATAACGACAATAAAATCTCACGAGCAGAGTTTG ATGCGTATCTGAGGTCGTATTTTGCCGCCCACCCGGAGCTTGCTGAGGTG GAGTATCCTAGTTTTGATGATTTTGATTTGGATGGGTCGGGGTTGGTGTC GTTTGCAGAGTGGAAGAAGTTTATTGAGGATTTGGAAAAGAGTCAGCAGG CAGAGGAAGGCCTGCTTTCGGCGGGGGGGGGAGGGGGAAGAGGGGGACGG CTCTAGGTTTGTGGGATAGGATGTGGATGGGAGGAAGGGGTAGGTTGGTT AAGAGAGTCTGCGTGTCTAGCAGGGATATTGGCGGAGGGAATGGAAGAAA GAAACGACAGGGGGAGAGGAGACTCACGTGACACGACAAGCCGGTATTTT TATAGCAGTAGCGAAAGCTAATCAAAGCGATGGAAAGACTTGGTTTGGTG CACCTATTTGACGTTTCCATAGATGTCCAATCTTCCTTTTGAAGTTCGTC CAAAAAACAGCCGCCTGAGGAGGAAAGGAGGGAGGAAGGGCCGGAGAGGA CAGGACAAGTGCATACGTGTTAAGAGGGAGGCGGGAGTATATATGGTAAG AGGACAGGCCCTTTGCTAAGCTTTCATACAGGAATGAAAACTTGTCGGCC TGTAAAAGGCTGCGCGATGATCAGGCGAGCGCTTTCTTTTTCTCCTTCTC CCTCCGGAAGTTGCCTTAGAACTCATACCCCACCCCAGCGCCCCTCCCTC CCCTACTTTTTTTCTTCCCTCCCCCCCTTGGAAGAGCACGCCCATGGCCT GGAGGGGGATTGATGAGAAGCAAAATAAGGAAAAAAGAAAACACGACATT AAAC back to topprotein sequence of NO01G03720.1 >NO01G03720.1-protein ID=NO01G03720.1-protein|Name=NO01G03720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp MRGCWGLASFSPILLLLCLAKSAEAQAYGQPQYQQQRPRAEFRDIGRKEP GKFWGMMKTGAVGAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQR KGAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKIAEFKL PDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFA EWKKFIEDLEKSQQAEEGLLSAGGGGGRGGRL* back to topmRNA from alignment at chr1:996627..998416+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03720.1 ID=NO01G03720.1|Name=NO01G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp|location=Sequence derived from alignment at chr1:996627..998416+ (Nannochloropsis oceanica) CAGCCCGTCTCACAATAGATTTGGAGAGCAAGCCCGGGGGCACCTTCATC
AATAGGAATGAGGGGCTGCTGGGGCCTTGCATCCTTCTCCCCCATCCTCC
TGCTCCTCTGCTTGGCTAAGAGTGCCGAAGCGCAAGCCTATGGGCAACCA
CAGTACCAGCAGCAGCGACCACGGGCTGAATTTCGGGACATTGGGCGGAA
AGAGCCCGGCAAGTACGTGTTGGACGGGAAGGGATGTTGAAGGCGCTGGG
AGCGTGGGGGAATGGGTGAAATTTGGTGTTCTAATGCGTCTCTTGTACTT
GAAAAAAAGCTCTTCAAATAGCCCTCTGGGATTGTTTTGCAATCCTCCTC
ATCTTTTGAATCTTGTGTCCTTTCAGCCTCGAACCGGCAGTCTCGTGACG
CGGAGGGCATGTATGTGTGCGGGACATGGCCCCTTTTCCTTTCCTTTTCC
CCTTTACCTTTGCGTCAGTATCTCCTGTGTATAAAGCGGGGTCGGTTTCT
TAAACTTCTAGTAGTCAGGGCATTTTTGGTCCGGAGAGATTTGATCACTA
CAGTACCCTGTTCCTGTGGAGTCATGCACACACACGCAGACGTCCCAATC
CTTCCTCCCTCTCTCCCGCCCTCTTTTCCTTCTTTCCCCTCTCCATAGAT
TTTGGGGCATGATGAAAACAGGCGCGGTCGGGGCAGTCGCCAGCTGGAGC
TTCGGCCAGCTCTACTACCGGTGGCAAGCCAAACGCCTCAAGAAGGCCCA
CCAAAAAAAAAGCGACAAGCTAATTGCCTCCTACCAACAACGGAAAGGAG
CGATTGTTGCCCAGTTTGGCGAGGCGTACCAAGCACTGGAAGTAAATGCT
GACTATGTTGATTCCTTAATTGCGCAACTAGAAGGAATTTTGCAGCACCC
CGAGACGGACCCCAATAAGAGGAAAATCGCCGAGTTTAAATTACCCGATG
CGAATAACGACAATAAAATCTCACGAGCAGAGTTTGATGCGTATCTGAGG
TCGTATTTTGCCGCCCACCCGGAGCTTGCTGAGGTGGAGTATCCTAGTTT
TGATGATTTTGATTTGGATGGGTCGGGGTTGGTGTCGTTTGCAGAGTGGA
AGAAGTTTATTGAGGATTTGGAAAAGAGTCAGCAGGCAGAGGAAGGCCTG
CTTTCGGCGGGGGGGGGAGGGGGAAGAGGGGGACGGCTCTAGGTTTGTGG
GATAGGATGTGGATGGGAGGAAGGGGTAGGTTGGTTAAGAGAGTCTGCGT
GTCTAGCAGGGATATTGGCGGAGGGAATGGAAGAAAGAAACGACAGGGGG
AGAGGAGACTCACGTGACACGACAAGCCGGTATTTTTATAGCAGTAGCGA
AAGCTAATCAAAGCGATGGAAAGACTTGGTTTGGTGCACCTATTTGACGT
TTCCATAGATGTCCAATCTTCCTTTTGAAGTTCGTCCAAAAAACAGCCGC
CTGAGGAGGAAAGGAGGGAGGAAGGGCCGGAGAGGACAGGACAAGTGCAT
ACGTGTTAAGAGGGAGGCGGGAGTATATATGGTAAGAGGACAGGCCCTTT
GCTAAGCTTTCATACAGGAATGAAAACTTGTCGGCCTGTAAAAGGCTGCG
CGATGATCAGGCGAGCGCTTTCTTTTTCTCCTTCTCCCTCCGGAAGTTGC
CTTAGAACTCATACCCCACCCCAGCGCCCCTCCCTCCCCTACTTTTTTTC
TTCCCTCCCCCCCTTGGAAGAGCACGCCCATGGCCTGGAGGGGGATTGAT
GAGAAGCAAAATAAGGAAAAAAGAAAACACGACATTAAAC back to topCoding sequence (CDS) from alignment at chr1:996627..998416+ >NO01G03720.1 ID=NO01G03720.1|Name=NO01G03720.1|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr1:996627..998416+ (Nannochloropsis oceanica) ATGAGGGGCTGCTGGGGCCTTGCATCCTTCTCCCCCATCCTCCTGCTCCT CTGCTTGGCTAAGAGTGCCGAAGCGCAAGCCTATGGGCAACCACAGTACC AGCAGCAGCGACCACGGGCTGAATTTCGGGACATTGGGCGGAAAGAGCCC GGCAAATTTTGGGGCATGATGAAAACAGGCGCGGTCGGGGCAGTCGCCAG CTGGAGCTTCGGCCAGCTCTACTACCGGTGGCAAGCCAAACGCCTCAAGA AGGCCCACCAAAAAAAAAGCGACAAGCTAATTGCCTCCTACCAACAACGG AAAGGAGCGATTGTTGCCCAGTTTGGCGAGGCGTACCAAGCACTGGAAGT AAATGCTGACTATGTTGATTCCTTAATTGCGCAACTAGAAGGAATTTTGC AGCACCCCGAGACGGACCCCAATAAGAGGAAAATCGCCGAGTTTAAATTA CCCGATGCGAATAACGACAATAAAATCTCACGAGCAGAGTTTGATGCGTA TCTGAGGTCGTATTTTGCCGCCCACCCGGAGCTTGCTGAGGTGGAGTATC CTAGTTTTGATGATTTTGATTTGGATGGGTCGGGGTTGGTGTCGTTTGCA GAGTGGAAGAAGTTTATTGAGGATTTGGAAAAGAGTCAGCAGGCAGAGGA AGGCCTGCTTTCGGCGGGGGGGGGAGGGGGAAGAGGGGGACGGCTCTAG back to top
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