NO01G03570, NO01G03570 (gene) Nannochloropsis oceanica

Overview
NameNO01G03570
Unique NameNO01G03570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1221
Alignment locationchr1:944916..946136 -

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Properties
Property NameValue
DescriptionDNA mismatch repair protein Mlh3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:944916..946136 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007131reciprocal meiotic recombination
GO:0006298mismatch repair
Vocabulary: Molecular Function
TermDefinition
GO:0016887ATPase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0032300mismatch repair complex
Vocabulary: INTERPRO
TermDefinition
IPR037198MutL_C_sf
IPR028830Mlh3
IPR038973MutL/Mlh/Pms
IPR014790MutL_C
Homology
BLAST of NO01G03570 vs. NCBI_GenBank
Match: XP_023019553.1 (uncharacterized protein LOC111508326 [Leptinotarsa decemlineata])

HSP 1 Score: 92.8 bits (229), Expect = 1.900e-15
Identity = 58/202 (28.71%), Postives = 106/202 (52.48%), Query Frame = 0
Query:   19 QVIAQVADCFIVI--RCDDMLCIWDQHALHERIRVESFLRNVNLPQQQIIRQSMKPFKPLVFPNYPPDDLELLRKPTTRAFLNRFCLDFQLIKTSVLVRTRPIIVEEPLP------DVTELLPALLRDLRDIQSRPGADPMQALPPCIRDILSSKACRGAIMFHTKLSRFTCKRLLIEISSTSFPFNCAHGRPSVVPLCLLD 213
            +VI QV   FI +  R  ++L ++DQHA+HERIR+E  L+        I +++       +    P +DL+LL+K    ++LN   L  +     + V   P+ +   +        + +++  L++++ D+        +  LP  +++I++ +ACRG+I F   L++  C  LL ++S+   PF CAHGRP++ P+  LD
Sbjct: 1186 EVIGQVDKKFIAVLDRESNLLILFDQHAVHERIRLEKLLK--------IYKEAKSELAEKLLFFIPENDLQLLKK--RESYLNFLGLSVEFFTNGINVIQVPLSLYSKIKHNNFSGTLNKMIHQLVKEIIDLLKSTRGASISTLPKLLQNIINMEACRGSIKFGDVLTKNKCAELLEKLSTCDLPFQCAHGRPTLTPVLALD 1377          
BLAST of NO01G03570 vs. NCBI_GenBank
Match: ODN04018.1 (DNA mismatch repair protein Mlh3 [Orchesella cincta])

HSP 1 Score: 92.0 bits (227), Expect = 3.200e-15
Identity = 70/202 (34.65%), Postives = 103/202 (50.99%), Query Frame = 0
Query:   36 MLCIWDQHALHERIRVESFLRN--VNLPQQQIIRQSMKPFKPLVFPNYPPDDLELLRKPTTRAFLNRFCLDFQLI-KTSVLVRTRP-----IIVEEPLPDVTELLPALLRDLRDIQ------SRPGADPMQALPPCIRDILSSKACRGAIMFHTKLSRFTCKRLLIEISSTSFPFNCAHGRPSVVPLCLLDHAAGGSPLSSS 224
            M+  +DQHA+HERIR+E F+    VN    +   +SM    P  F N    ++ LL+  T   F N+  L FQ I  T + ++  P         EPL    +L   L+ +L   Q      ++ G+     +P  + ++L S+AC GAI F  +L   TCK+L+ ++     PF CAHGRPSVVPL  +D+ +   PLS S
Sbjct:  997 MIVAFDQHAVHERIRLEKFVEESFVNPKGVKKYLKSMGIMPPYKF-NMSETEVRLLQ--TFEDFFNQNGLKFQPISSTCIKIKGVPKCFGERAATEPLASREQLFRGLIFNLIQEQIHHIRETKKGS--FTTMPKAVFEVLCSQACHGAIKFGDELDMDTCKQLISDLKQCKTPFQCAHGRPSVVPLTYVDNFSKTHPLSHS 1193          
BLAST of NO01G03570 vs. NCBI_GenBank
Match: XP_023310542.1 (LOW QUALITY PROTEIN: DNA mismatch repair protein Mlh3-like [Anoplophora glabripennis])

HSP 1 Score: 91.7 bits (226), Expect = 4.200e-15
Identity = 63/195 (32.31%), Postives = 106/195 (54.36%), Query Frame = 0
Query:   20 VIAQVADCFIVI--RCDDMLCIWDQHALHERIRVESFLRNVNLPQQQIIRQSMKPFKPLVFPNYPPDDLELLRKPTTRAFLNRFCLDFQLIKTSVLVRTRPIIVEEPLPDVTELLPALLRDLRDIQSRPGADPMQALPPCIRDILSSKACRGAIMFHTKLSRFTCKRLLIEISSTSFPFNCAHGRPSVVPLCLLD 213
            VI Q+   FIV+      ++ ++DQHA+HERIR+E  L++ +  +    R      K +VF +   +DL LLRK     +LN   L  +  +  + +   P+ +     D + ++  L++++ ++         + LP  I++IL+ +ACRGAI F  KLS   C+ +L ++S    PF CAHGRP++VPL  L+
Sbjct:  554 VIGQLDKKFIVVVEETKHLVILFDQHAVHERIRLEDLLKSYSNAKISCHRD-----KFIVFLSC--NDLSLLRK--HEEYLNFLGLFVEFFEDGINIVDIPLCLHNKFKD-SVMIQLLIKEIIELVKDTRGVTFKNLPKIIQNILNLEACRGAIKFGDKLSNNDCEEVLKKLSICDLPFQCAHGRPTLVPLITLN 738          
BLAST of NO01G03570 vs. NCBI_GenBank
Match: CEP22496.1 (MLH3 [Cyberlindnera jadinii])

HSP 1 Score: 90.5 bits (223), Expect = 9.400e-15
Identity = 70/208 (33.65%), Postives = 104/208 (50.00%), Query Frame = 0
Query:   20 VIAQVADCFIVI--RCDDMLCIWDQHALHERIRVESFLRNVNLPQQQIIRQSMKPFKPLVFPNYPPDDLELLRKPTTRAFLNRFCLDFQLIKT-----SVLVRTRPIIVEEPLPDVTE-LLPALLRDLRDIQSRPGADP----------MQALPPCIRDILSSKACRGAIMFHTKLSRFTCKRLLIEISSTSFPFNCAHGRPSVVPLC 210
            VIAQV D FI+I  + +  L I DQHA  ERIRVE   + +     Q  +    P K  V  + P   LELL   T    L  + + F   ++     +V     P ++   + D    ++ ++++   D+Q +               MQA+P  +  +L+SKACR AIMF   LS+F C+ L+ +++    PF CAHGRPSV+PLC
Sbjct:  486 VIAQVDDKFILIKSKVEPKLYIVDQHACDERIRVEELYKQLIEMASQSTQSLAVPLKTNVSADAPLGALELLN--TYSKELENWGIKFTTARSNNESGNVTFTHLPELMHCKVDDDNSFVVRSIMQYAHDLQDKVKLTSLNRHQDWFLNMQAMPTILTLLLNSKACRSAIMFGQTLSKFECQLLVQKLAQCKQPFQCAHGRPSVIPLC 691          
BLAST of NO01G03570 vs. NCBI_GenBank
Match: XP_020072391.1 (hypothetical protein CYBJADRAFT_166096 [Cyberlindnera jadinii NRRL Y-1542] >ODV75352.1 hypothetical protein CYBJADRAFT_166096 [Cyberlindnera jadinii NRRL Y-1542])

HSP 1 Score: 90.5 bits (223), Expect = 9.400e-15
Identity = 70/208 (33.65%), Postives = 104/208 (50.00%), Query Frame = 0
Query:   20 VIAQVADCFIVI--RCDDMLCIWDQHALHERIRVESFLRNVNLPQQQIIRQSMKPFKPLVFPNYPPDDLELLRKPTTRAFLNRFCLDFQLIKT-----SVLVRTRPIIVEEPLPDVTE-LLPALLRDLRDIQSRPGADP----------MQALPPCIRDILSSKACRGAIMFHTKLSRFTCKRLLIEISSTSFPFNCAHGRPSVVPLC 210
            VIAQV D FI+I  + +  L I DQHA  ERIRVE   + +     Q  +    P K  V  + P   LELL   T    L  + + F   ++     +V     P ++   + D    ++ ++++   D+Q +               MQA+P  +  +L+SKACR AIMF   LS+F C+ L+ +++    PF CAHGRPSV+PLC
Sbjct:  446 VIAQVDDKFILIKSKVEPKLYIVDQHACDERIRVEELYKQLIEMASQSTQSLAVPLKTNVSADAPLGALELLN--TYSKELENWGIKFTTARSNNESGNVTFTHLPELMHCKVDDDNSFVVRSIMQYAHDLQDKVKLTSLNRHQDWFLNMQAMPTILTLLLNSKACRSAIMFGQTLSKFECQLLVQKLAQCKQPFQCAHGRPSVIPLC 651          
BLAST of NO01G03570 vs. NCBI_GenBank
Match: KHJ32947.1 (putative dna mismatch repair protein [Erysiphe necator])

HSP 1 Score: 90.1 bits (222), Expect = 1.200e-14
Identity = 77/251 (30.68%), Postives = 119/251 (47.41%), Query Frame = 0
Query:    7 RIHKNMLSQGRTQVIAQVADCFIVI------------RCDDMLCIWDQHALHERIRVESFLRNVNLPQQQIIRQSMKPF--------KPLVFPNYPPDDLELLRKPTTRAFLNRFCLDFQL-----------IKTSVLVRTRPIIVEEPLPDVTELLPALLR-------DLRD--------IQSRPGADPMQALPPCIRDILSSKACRGAIMFHTKLSRFTCKRLLIEISSTSFPFNCAHGRPSVVPLCLL 212
            RI K  L   +   I+QV + FI +            R +D+L + DQHA  ERIR+ES L  +  P   +I +   P+        +PL+  + PP+++ELL   T R +   +   ++L              +++V + P ++ E       LL +LLR       D  D          S    D +   P  + D+L+++ACR AIMF+ +LS   C+ L+  ++  SFPF CAHGRPS+VPL  L
Sbjct:  702 RISKRALKDAK--FISQVDNKFIFVKVFTTDCKELAQRSEDLLVMIDQHAADERIRIESLLEELCTP--AMITEVDSPYRVKSYILMRPLII-SLPPNEIELLF--TYRNYFLSWGFSYKLPAHGSVSNQTNNNQTLIVLSLPPVIAERCQQQPHLLSSLLRKEICKLQDSNDNLQVLSTFSSSTSWLDRIHTCPVGVLDLLNTRACRSAIMFNDELSEEQCRILVKRLAECSFPFMCAHGRPSMVPLAKL 945          
BLAST of NO01G03570 vs. NCBI_GenBank
Match: XP_002417975.1 (DNA mismatch repair protein (mutL homologue), putative [Candida dubliniensis CD36] >CAX45694.1 DNA mismatch repair protein (mutL homologue), putative [Candida dubliniensis CD36])

HSP 1 Score: 88.6 bits (218), Expect = 3.600e-14
Identity = 67/219 (30.59%), Postives = 106/219 (48.40%), Query Frame = 0
Query:    5 SLRIHKNMLSQGRTQVIAQVADCFIVIRCDDMLCIWDQHALHERIRVESFL------RNVNLPQQQIIRQSMKPFKPLVFPNYPPDDLELLRKPTTRAFLNRFCLDFQLIKTSVLVRTRPIIVEEPLPDVTELLPALLR---DLRDIQSRPGAD------PMQALPPCIRDILSSKACRGAIMFHTKLSRFTCKRLLIEISSTSFPFNCAHGRPSVVPL 209
            +L   +  L+ GR +VI Q+   FI++   D + + DQHA  ERIRVE +L      R+  L  Q  +   + P + ++F  Y P+              N F + F      V++   P ++ +   D+  L  +LL+   DL D   R   D          LP  I ++++SKACR AIMF   L++    +++ ++S    PF CAHGRPS+VP+
Sbjct:  388 NLSFSREDLAPGRFKVINQIDRKFILLTIADQIVVLDQHASDERIRVEQYLQEFVEQRHPGLRLQNPVTFILHPSETVLFDQYAPN-------------FNTFGIHFATQSDRVVITHLPFLLTKIENDL--LKDSLLQHCYDLADHVKRVHIDCNNWFETSYHLPRIITELINSKACRSAIMFGDILTKDEMYQIVTKLSQCKLPFQCAHGRPSIVPI 591          
BLAST of NO01G03570 vs. NCBI_GenBank
Match: AEH59228.1 (MLH3, partial [Oidiodendron maius])

HSP 1 Score: 87.8 bits (216), Expect = 6.100e-14
Identity = 76/256 (29.69%), Postives = 119/256 (46.48%), Query Frame = 0
Query:    1 MSGRSLRIHKNMLSQGRTQVIAQVADCFIVIRCDD--------------MLCIWDQHALHERIRVESFLRNVNLPQQQIIR-----QSMKPFKPLVFPNYPPDDLELLRKPTTRAFLNRFCLDFQLI------------KTSVLVRTRPIIVEEPLPDVTELLPALLRD----LRDIQSRPGADPM-------------QALPPCIRDILSSKACRGAIMFHTKLSRFTCKRLLIEISSTSFPFNCAHGRPSVVPL 209
            +SG S RI K  L     +VI+QV   +I+I+ +               +L + DQHA  ERIR+E  ++ +  PQQ  I      Q +   KPL   +Y     E+      R   + + + + +               +V+++  P ++ E      +LL  L+R     L D    P A  M             ++ P  I D+L+S+ACR AIMF+ +LS+  C+RL+  ++  +FPF CAHGRPS+VPL
Sbjct:   16 VSGTSWRISKGALR--NAEVISQVDKKYILIKLNSLNYEAEAGENIQGPLLVVIDQHAADERIRIERLMQELCSPQQPNISGDSGVQGIHLEKPL---SYIVSKKEINLLQNHRNHFSDWGISYDISAKVTTTNGEDHGSQTVIIKCLPPVISERCKANPKLLIDLIRTEIWRLHDHGDTPRAATMLDAQENHSWVAKIRSCPQGIIDMLNSRACRSAIMFNDELSKEQCQRLISRLAECAFPFQCAHGRPSIVPL 266          
BLAST of NO01G03570 vs. NCBI_GenBank
Match: KHC42098.1 (DNA mismatch repair protein MLH3 [Candida albicans P76067])

HSP 1 Score: 87.8 bits (216), Expect = 6.100e-14
Identity = 71/210 (33.81%), Postives = 106/210 (50.48%), Query Frame = 0
Query:   13 LSQGRTQVIAQVADCFIVIRCDDMLCIWDQHALHERIRVESFLRN-VNLPQQQIIRQSMKPFKPLVFPNYPPDDLELLRKPTTRAFLNRFCLDFQLIKTSVLVRTRPIIVEEPLPDVTELL-PALLR---DLRDIQSR--PGAD----PMQALPPCIRDILSSKACRGAIMFHTKLSRFTCKRLLIEISSTSFPFNCAHGRPSVVPLCLL 212
            L+  + +VI QV   FI++  DD L + DQHA  ERIRVE +L+  V+ P        ++   P+ F  +     EL+      A  N F + +      V++   P+I+   + D  E L  +LL+   DL D   R  P  D        LP  I ++++SKACR AIMF   L++   + L+ ++S    PF CAHGRPS+VP+  L
Sbjct:  409 LAPEKFRVINQVDRKFILLAADDQLVVLDQHASDERIRVEQYLQEFVSQP-----NPGLRLHSPIAFDVHAS---ELMLFDQYAANFNSFGICYTTDTAQVVITHLPLILLTKVEDDAEFLKDSLLQHCYDLHDHVKRISPNFDNWFETSYHLPRIITELINSKACRSAIMFGDILTKDEMQDLVNKLSRCKLPFQCAHGRPSIVPIANL 610          
BLAST of NO01G03570 vs. NCBI_GenBank
Match: KIM95242.1 (hypothetical protein OIDMADRAFT_134029 [Oidiodendron maius Zn])

HSP 1 Score: 87.8 bits (216), Expect = 6.100e-14
Identity = 76/256 (29.69%), Postives = 119/256 (46.48%), Query Frame = 0
Query:    1 MSGRSLRIHKNMLSQGRTQVIAQVADCFIVIRCDD--------------MLCIWDQHALHERIRVESFLRNVNLPQQQIIR-----QSMKPFKPLVFPNYPPDDLELLRKPTTRAFLNRFCLDFQLI------------KTSVLVRTRPIIVEEPLPDVTELLPALLRD----LRDIQSRPGADPM-------------QALPPCIRDILSSKACRGAIMFHTKLSRFTCKRLLIEISSTSFPFNCAHGRPSVVPL 209
            +SG S RI K  L     +VI+QV   +I+I+ +               +L + DQHA  ERIR+E  ++ +  PQQ  I      Q +   KPL   +Y     E+      R   + + + + +               +V+++  P ++ E      +LL  L+R     L D    P A  M             ++ P  I D+L+S+ACR AIMF+ +LS+  C+RL+  ++  +FPF CAHGRPS+VPL
Sbjct:  654 VSGTSWRISKGALR--NAEVISQVDKKYILIKLNSLNYEAEAGENIQGPLLVVIDQHAADERIRIERLMQELCSPQQPNISGDSGVQGIHLEKPL---SYIVSKKEINLLQNHRNHFSDWGISYDISAKVTTTNGEDHGSQTVIIKCLPPVISERCKANPKLLIDLIRTEIWRLHDHGDTPRAATMLDAQENHSWVAKIRSCPQGIIDMLNSRACRSAIMFNDELSKEQCQRLISRLAECAFPFQCAHGRPSIVPL 904          
The following BLAST results are available for this feature:
BLAST of NO01G03570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_023019553.11.900e-1528.71uncharacterized protein LOC111508326 [Leptinotarsa... [more]
ODN04018.13.200e-1534.65DNA mismatch repair protein Mlh3 [Orchesella cinct... [more]
XP_023310542.14.200e-1532.31LOW QUALITY PROTEIN: DNA mismatch repair protein M... [more]
CEP22496.19.400e-1533.65MLH3 [Cyberlindnera jadinii][more]
XP_020072391.19.400e-1533.65hypothetical protein CYBJADRAFT_166096 [Cyberlindn... [more]
KHJ32947.11.200e-1430.68putative dna mismatch repair protein [Erysiphe nec... [more]
XP_002417975.13.600e-1430.59DNA mismatch repair protein (mutL homologue), puta... [more]
AEH59228.16.100e-1429.69MLH3, partial [Oidiodendron maius][more]
KHC42098.16.100e-1433.81DNA mismatch repair protein MLH3 [Candida albicans... [more]
KIM95242.16.100e-1429.69hypothetical protein OIDMADRAFT_134029 [Oidiodendr... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03570.1NO01G03570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636715gene_360Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03570.1NO01G03570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03570 ID=NO01G03570|Name=NO01G03570|organism=Nannochloropsis oceanica|type=gene|length=1221bp
ATGTCGGGACGAAGTCTCAGGATCCACAAGAATATGCTCAGCCAAGGAAG
GACCCAGGTCATTGCACAGgtatgtttagcctgaggaggaggaggaggtg
gagaacagaagaacaagaagaagaagaagggagaagccggatggagaatt
gaaggttagatgaatgagaaggattatgagaagaacagctgaaatggtga
tggatgatgaaagcaggaatccggtgatgcagacacaccccttcgatcat
tacacgccccatagGTCGCAGACTGCTTCATTGTCATCAGGTGTGACGAC
ATGCTGTGTATCTGGGACCAACATGCATTGCATGAGCGCATCCGCGTTGA
GTCCTTCCTTAGGAATGTGAACCTTCCCCAGCAACAAATTATCCGACAGT
CCATGAAACCCTTCAAACCCCTCGTCTTCCCCAATTATCCGCCCGACGAC
CTGGAACTCCTTCGCAAACCTACCACGCGTGCCTTTCTCAACCGTTTTTG
CCTTGATTTCCAACTTATTAAGACCTCTGTCTTAGTCCGCACGCGGCCCA
TCATCGTCGAAGAACCACTGCCGGACGTGACCGAACTCTTACCTGCCTTG
CTCCGAGATTTGCGCGATATCCAAAGCCGACCTGGAGCAGACCCTATGCA
Ggtaatgatacggtcttattctatctaaagcctacttcctgcccgcaagc
actaagccggagactcgggttcaggatcgctcatattaatgtttccacca
acctatccgtccgtccgtccgtccctcccctcccttttccagGCTCTCCC
CCCCTGCATCCGGGACATCCTCAGCTCCAAAGCCTGTCGTGGCGCTATTA
TGTTCCACACCAAGCTCAGTCGCTTCACCTGTAAACGACTTCTAATCGAA
ATCTCATCCACTTCTTTTCCGTTTAACTGCGCGCATGGCCGGCCCTCCGT
CGTGCCATTGTGTTTGCTCGACCACGCTGCTGGAGGCTCTCCCTTGTCCT
CATCCACGACCTCTTCCTTATCCTCATCCCTGCAGCAAACGATTGAAAAA
ATTGAGCGGCCCGGCAGAGGAGGTCAAGGGAGGAATGGGAGTAAGAGTAG
GAGCAGCAGCTGTAGTAGCATGAATATGCCGTTGCGATTTCGTCTCGGGG
GGAGCAGTGGAGGGCATTCGTTGTTAGCCCCTCACCTGGAGAGACTGCGT
ACGAAAGAGATAAGCAACTAG
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protein sequence of NO01G03570.1

>NO01G03570.1-protein ID=NO01G03570.1-protein|Name=NO01G03570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MSGRSLRIHKNMLSQGRTQVIAQVADCFIVIRCDDMLCIWDQHALHERIR
VESFLRNVNLPQQQIIRQSMKPFKPLVFPNYPPDDLELLRKPTTRAFLNR
FCLDFQLIKTSVLVRTRPIIVEEPLPDVTELLPALLRDLRDIQSRPGADP
MQALPPCIRDILSSKACRGAIMFHTKLSRFTCKRLLIEISSTSFPFNCAH
GRPSVVPLCLLDHAAGGSPLSSSTTSSLSSSLQQTIEKIERPGRGGQGRN
GSKSRSSSCSSMNMPLRFRLGGSSGGHSLLAPHLERLRTKEISN*
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Synonyms
Publications