NO01G03570.1, NO01G03570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03570.1
Unique NameNO01G03570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length885
Alignment locationchr1:944916..946136 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:944916..946136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03570.1 vs.
Match: XP_023019553.1 (uncharacterized protein LOC111508326 [Leptinotarsa decemlineata])

HSP 1 Score: 93.2 bits (230), Expect = 1.400e-15
Identity = 60/202 (29.70%), Postives = 107/202 (52.97%), Query Frame = 0 
Query:   19 QVIAQVADCFIVI--RCDDMLCIWDQHALHERIRVESFLRNVNLPQQQIIRQSMKPFKPLVFPNYPPDDLELLRKPTTRAFLNRFCLDFQLIKTSVLVRTRPIIVEEPLPD------VTELLPALLRDLRDIQSRPGADPMQALPPCIRDILSSKACRGAIMFHTKLSRFTCKRLLIEISSTSFPFNCAHGRPSVVPLCLLD 213
            +VI QV   FI +  R  ++L ++DQHA+HERIR+E  L+     + ++        K L F   P +DL+LL+K    ++LN   L  +     + V   P+ +   +        + +++  L++++ D+        +  LP  +++I++ +ACRG+I F   L++  C  LL ++S+   PF CAHGRP++ P+  LD
Sbjct: 1186 EVIGQVDKKFIAVLDRESNLLILFDQHAVHERIRLEKLLKIYKEAKSELAE------KLLFF--IPENDLQLLKK--RESYLNFLGLSVEFFTNGINVIQVPLSLYSKIKHNNFSGTLNKMIHQLVKEIIDLLKSTRGASISTLPKLLQNIINMEACRGSIKFGDVLTKNKCAELLEKLSTCDLPFQCAHGRPTLTPVLALD 1377
The following BLAST results are available for this feature:
BLAST of NO01G03570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_023019553.11.400e-1529.70uncharacterized protein LOC111508326 [Leptinotarsa... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03570NO01G03570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03570.1NO01G03570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03570.1.cds1NO01G03570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03570.1.cds2NO01G03570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03570.1.cds3NO01G03570.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03570.1 ID=NO01G03570.1|Name=NO01G03570.1|organism=Nannochloropsis oceanica|type=mRNA|length=885bp
ATGTCGGGACGAAGTCTCAGGATCCACAAGAATATGCTCAGCCAAGGAAG
GACCCAGGTCATTGCACAGGTCGCAGACTGCTTCATTGTCATCAGGTGTG
ACGACATGCTGTGTATCTGGGACCAACATGCATTGCATGAGCGCATCCGC
GTTGAGTCCTTCCTTAGGAATGTGAACCTTCCCCAGCAACAAATTATCCG
ACAGTCCATGAAACCCTTCAAACCCCTCGTCTTCCCCAATTATCCGCCCG
ACGACCTGGAACTCCTTCGCAAACCTACCACGCGTGCCTTTCTCAACCGT
TTTTGCCTTGATTTCCAACTTATTAAGACCTCTGTCTTAGTCCGCACGCG
GCCCATCATCGTCGAAGAACCACTGCCGGACGTGACCGAACTCTTACCTG
CCTTGCTCCGAGATTTGCGCGATATCCAAAGCCGACCTGGAGCAGACCCT
ATGCAGGCTCTCCCCCCCTGCATCCGGGACATCCTCAGCTCCAAAGCCTG
TCGTGGCGCTATTATGTTCCACACCAAGCTCAGTCGCTTCACCTGTAAAC
GACTTCTAATCGAAATCTCATCCACTTCTTTTCCGTTTAACTGCGCGCAT
GGCCGGCCCTCCGTCGTGCCATTGTGTTTGCTCGACCACGCTGCTGGAGG
CTCTCCCTTGTCCTCATCCACGACCTCTTCCTTATCCTCATCCCTGCAGC
AAACGATTGAAAAAATTGAGCGGCCCGGCAGAGGAGGTCAAGGGAGGAAT
GGGAGTAAGAGTAGGAGCAGCAGCTGTAGTAGCATGAATATGCCGTTGCG
ATTTCGTCTCGGGGGGAGCAGTGGAGGGCATTCGTTGTTAGCCCCTCACC
TGGAGAGACTGCGTACGAAAGAGATAAGCAACTAG
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protein sequence of NO01G03570.1

>NO01G03570.1-protein ID=NO01G03570.1-protein|Name=NO01G03570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MSGRSLRIHKNMLSQGRTQVIAQVADCFIVIRCDDMLCIWDQHALHERIR
VESFLRNVNLPQQQIIRQSMKPFKPLVFPNYPPDDLELLRKPTTRAFLNR
FCLDFQLIKTSVLVRTRPIIVEEPLPDVTELLPALLRDLRDIQSRPGADP
MQALPPCIRDILSSKACRGAIMFHTKLSRFTCKRLLIEISSTSFPFNCAH
GRPSVVPLCLLDHAAGGSPLSSSTTSSLSSSLQQTIEKIERPGRGGQGRN
GSKSRSSSCSSMNMPLRFRLGGSSGGHSLLAPHLERLRTKEISN*
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mRNA from alignment at chr1:944916..946136-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03570.1 ID=NO01G03570.1|Name=NO01G03570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp|location=Sequence derived from alignment at chr1:944916..946136- (Nannochloropsis oceanica)
ATGTCGGGACGAAGTCTCAGGATCCACAAGAATATGCTCAGCCAAGGAAG
GACCCAGGTCATTGCACAGGTATGTTTAGCCTGAGGAGGAGGAGGAGGTG
GAGAACAGAAGAACAAGAAGAAGAAGAAGGGAGAAGCCGGATGGAGAATT
GAAGGTTAGATGAATGAGAAGGATTATGAGAAGAACAGCTGAAATGGTGA
TGGATGATGAAAGCAGGAATCCGGTGATGCAGACACACCCCTTCGATCAT
TACACGCCCCATAGGTCGCAGACTGCTTCATTGTCATCAGGTGTGACGAC
ATGCTGTGTATCTGGGACCAACATGCATTGCATGAGCGCATCCGCGTTGA
GTCCTTCCTTAGGAATGTGAACCTTCCCCAGCAACAAATTATCCGACAGT
CCATGAAACCCTTCAAACCCCTCGTCTTCCCCAATTATCCGCCCGACGAC
CTGGAACTCCTTCGCAAACCTACCACGCGTGCCTTTCTCAACCGTTTTTG
CCTTGATTTCCAACTTATTAAGACCTCTGTCTTAGTCCGCACGCGGCCCA
TCATCGTCGAAGAACCACTGCCGGACGTGACCGAACTCTTACCTGCCTTG
CTCCGAGATTTGCGCGATATCCAAAGCCGACCTGGAGCAGACCCTATGCA
GGTAATGATACGGTCTTATTCTATCTAAAGCCTACTTCCTGCCCGCAAGC
ACTAAGCCGGAGACTCGGGTTCAGGATCGCTCATATTAATGTTTCCACCA
ACCTATCCGTCCGTCCGTCCGTCCCTCCCCTCCCTTTTCCAGGCTCTCCC
CCCCTGCATCCGGGACATCCTCAGCTCCAAAGCCTGTCGTGGCGCTATTA
TGTTCCACACCAAGCTCAGTCGCTTCACCTGTAAACGACTTCTAATCGAA
ATCTCATCCACTTCTTTTCCGTTTAACTGCGCGCATGGCCGGCCCTCCGT
CGTGCCATTGTGTTTGCTCGACCACGCTGCTGGAGGCTCTCCCTTGTCCT
CATCCACGACCTCTTCCTTATCCTCATCCCTGCAGCAAACGATTGAAAAA
ATTGAGCGGCCCGGCAGAGGAGGTCAAGGGAGGAATGGGAGTAAGAGTAG
GAGCAGCAGCTGTAGTAGCATGAATATGCCGTTGCGATTTCGTCTCGGGG
GGAGCAGTGGAGGGCATTCGTTGTTAGCCCCTCACCTGGAGAGACTGCGT
ACGAAAGAGATAAGCAACTAG
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Coding sequence (CDS) from alignment at chr1:944916..946136-

>NO01G03570.1 ID=NO01G03570.1|Name=NO01G03570.1|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at chr1:944916..946136- (Nannochloropsis oceanica)
ATGTCGGGACGAAGTCTCAGGATCCACAAGAATATGCTCAGCCAAGGAAG
GACCCAGGTCATTGCACAGGTCGCAGACTGCTTCATTGTCATCAGGTGTG
ACGACATGCTGTGTATCTGGGACCAACATGCATTGCATGAGCGCATCCGC
GTTGAGTCCTTCCTTAGGAATGTGAACCTTCCCCAGCAACAAATTATCCG
ACAGTCCATGAAACCCTTCAAACCCCTCGTCTTCCCCAATTATCCGCCCG
ACGACCTGGAACTCCTTCGCAAACCTACCACGCGTGCCTTTCTCAACCGT
TTTTGCCTTGATTTCCAACTTATTAAGACCTCTGTCTTAGTCCGCACGCG
GCCCATCATCGTCGAAGAACCACTGCCGGACGTGACCGAACTCTTACCTG
CCTTGCTCCGAGATTTGCGCGATATCCAAAGCCGACCTGGAGCAGACCCT
ATGCAGGCTCTCCCCCCCTGCATCCGGGACATCCTCAGCTCCAAAGCCTG
TCGTGGCGCTATTATGTTCCACACCAAGCTCAGTCGCTTCACCTGTAAAC
GACTTCTAATCGAAATCTCATCCACTTCTTTTCCGTTTAACTGCGCGCAT
GGCCGGCCCTCCGTCGTGCCATTGTGTTTGCTCGACCACGCTGCTGGAGG
CTCTCCCTTGTCCTCATCCACGACCTCTTCCTTATCCTCATCCCTGCAGC
AAACGATTGAAAAAATTGAGCGGCCCGGCAGAGGAGGTCAAGGGAGGAAT
GGGAGTAAGAGTAGGAGCAGCAGCTGTAGTAGCATGAATATGCCGTTGCG
ATTTCGTCTCGGGGGGAGCAGTGGAGGGCATTCGTTGTTAGCCCCTCACC
TGGAGAGACTGCGTACGAAAGAGATAAGCAACTAG
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Synonyms
Publications