NO01G03400, NO01G03400 (gene) Nannochloropsis oceanica

Overview
NameNO01G03400
Unique NameNO01G03400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2109
Alignment locationchr1:889462..891570 +

Link to JBrowse

Properties
Property NameValue
DescriptionPh domain-containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:889462..891570 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0035091phosphatidylinositol binding
GO:0035091phosphatidylinositol binding
Vocabulary: INTERPRO
TermDefinition
IPR036871PX_dom_sf
IPR038765Papain_like_cys_pep_sf
IPR024453Peptidase_C92
IPR001683Phox
Homology
BLAST of NO01G03400 vs. NCBI_GenBank
Match: XP_005856064.1 (ph domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU20295.1 ph domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 355.1 bits (910), Expect = 4.200e-94
Identity = 206/439 (46.92%), Postives = 271/439 (61.73%), Query Frame = 0
Query:  171 RRKMDAFGKEYVAYDITVKNGLLAWQLCKRYSDFAVMHERLNKH-EQXXXXXXXXXGEETILLPL--PHLPSKLFQAVQGRKERLEVYLQQVVDRPFSKENPHVLAFLGILSSMSAKLYSIHTDISNTTNNTSRKKRQILHISALGKTLQMGDIVLFQCAHNMAGLQRNVTRSEWDHGRFGAIALVVKRQDGREFDLLESTADGVTCWPLSSRISAYATEFTSYMGIRKLEGERTPAMQKRLHAFVEQVKGKPYGFPLGALFASKYVAPTQAIASPVGAXXXXXXXXXXXXXXXXFPCSFSSFLSLNDFRGRWRELGTAAVNELFKLGLRSKGERDKQEVAPAVTXXXXXXXXXXXXXXXPRQVKNAAEEEAPGSFFCSNLVAAALREMGVLKAERNINYFLPGAFTAGGEVDEAVRAGWRFGDVILLDVSALEMGKAS 607
            R K DAFGKEYVA+ I VKNG LAWQL KR+S+FA MH +  +H EQ               LP   P L  K  +++ GR++ LEVYLQ+++D P + E+PHVLAFLGI+SS+SA+L S   + +  +N  + K+R+I+H+S+L   L+MGDI+LFQCAH +AGLQR VTR+EWDH     +ALVVKRQDGR  DLLEST DGVTC PLS+R++AYATEFTSYMG+RKL+G+RT AM+K+L  FVE++ G+PYGFPL  LFA KY+     +A PV A                    +  FL+      R R       +++  L   +  + D       V                    K + +      FFCSNLVAAALREM VLKA+ N +YF PGAFT GGE+D+A R G+   DV+L+D + LE+G+A+
Sbjct:    1 RIKTDAFGKEYVAFQIGVKNGNLAWQLSKRFSEFASMHGKFCRHLEQRLQKWPEESRHLHAYLPALPPRLWHKSAESLDGRQKDLEVYLQRLLDVPIATEDPHVLAFLGIVSSLSAELASPSAEFNAHSN--AMKQRKIIHVSSLNGDLEMGDIILFQCAHALAGLQRGVTRAEWDH-----VALVVKRQDGRGCDLLESTCDGVTCVPLSARMAAYATEFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVA-PVTAYGLPSPKSNTWHSNLRSVPFYPDFLN-----NRRRH------SKVTALSASNSSQADSSSGMEVVE-------------------KASRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRAT 401          
BLAST of NO01G03400 vs. NCBI_GenBank
Match: OQR89379.1 (ribonuclease H2 subunit A [Achlya hypogyna])

HSP 1 Score: 153.7 bits (387), Expect = 1.900e-33
Identity = 126/461 (27.33%), Postives = 192/461 (41.65%), Query Frame = 0
Query:  152 LMPANELPPARFLVRITSTRRKMDAFGKEYVAYDITVKNGLLAWQLCKRYSDFAVMHERLNKHEQXXXXXXXXXGEETILLPLPHLPSKLFQAVQGRKERLEVYLQQVVDRPFSKENPHVLAFLGILSSMSAKLYSIHTDISNTTNNTSRKKRQILHISALGKTLQMGDIVLFQCAHNMAGLQRNVTRSEWDHGRFGAIALVVKRQDGREFDLLESTADGVTCWPLSSRISAYATEFTSYMGIRKLEGERTPAMQK-----RLHAFVEQVKGKPYGFPLGALFASKYVAPTQAIASPVGAXXXXXXXXXXXXXXXXFPCSFSSFLSLNDFRGRWRELGTAAVNELFKLGLRSKGERDKQEVAPAVTXXXXXXXXXXXXXXXPRQVKNAAEEEAPGSFFCSNLVAAALREMGVLKAERNINYFLPGAFTAGGEVDEAVRA-GWRFGDVILLDVSALEMGKAS 607
            L+PA+   P  F + I S+++  D     Y  Y I+V +G L W + +RY DF  MH  L    +              L P   LPS     V  R+  LE YL+Q++  P   E+P  L+FLG LS+     +  H  ++          R ++H+  L + + +GDI+LF+  ++M+G+QR++T +EWDH     + +V+  Q+  ++ LLE+T DGVT +PL  RI AY + FT+Y+ +RKL  +  PA+ +     +L AF  QV GKPY   LG L                                                                                                      VK      A   FFCS L+AAAL+ +G+L  +   + F PG F +GG+VD+A+ A G      +++D   LE+   S
Sbjct:  320 LVPASAAIPTEFELAIASSKKVQDLSDAIYTMYCISVCHGELKWHVTRRYRDFCQMHTHLAAELKMVL---------PTLPPKTWLPSVDEAFVLERQAALETYLRQLLPMPGVMESPKFLSFLGALST----TWFEHERLTGV-------PRDVVHVRILHRFVSVGDILLFRSKNSMSGVQRSMTGAEWDH-----VGMVIALQN--KWMLLEATGDGVTIFPLVPRILAYTSCFTNYIALRKL--QLPPAVDRDEFTDKLAAFASQVDGKPYVMTLGKL------------------------------------------------------------------------------------------------------VKQEETNAALSGFFCSELIAAALKHIGLLDTDLAASNFWPGCFASGGQVDKALAARGAGLDPEVVIDCRVLEIAMTS 649          
BLAST of NO01G03400 vs. NCBI_GenBank
Match: XP_009838886.1 (hypothetical protein H257_13129 [Aphanomyces astaci] >ETV71697.1 hypothetical protein H257_13129 [Aphanomyces astaci])

HSP 1 Score: 145.6 bits (366), Expect = 5.100e-31
Identity = 99/296 (33.45%), Postives = 151/296 (51.01%), Query Frame = 0
Query:  161 ARFLVRITSTRRKMDAFGKEYVAYDITVKNGLLAWQLCKRYSDFAVMHERLNKHEQXXXXXXXXXGEETILLPLPHLPSKLF------QAVQGRKERLEVYLQQVVDRPFSKENPHVLAFLGILSSMSAKLYSIHTDISNTTNNTSRKKRQILHISALGKTLQMGDIVLFQCAHNMAGLQRNVTRSEWDHGRFGAIALVVKRQDGREFDLLESTADGVTCWPLSSRISAYATEFTSYMGIRKLEGERTP-----AMQKRLHAFVEQVKGKPYGFPLGALFASKYVAPTQAIASPVG 446
            A F + +TS++R  D     Y  + I V +G L W + +R+ DF+++ ++L               +E     LP LP K +      + +Q R+ RLE YL+Q+  RP + ++   L+FLG LSS   +    H  IS          R +LH+  L + ++ GD++LFQ  ++M+G+QR +T +EWDH   G +          +F LLE+T DGVT  PL  RI AY + F +Y+ +RKL   R P        +R+HAFV  V+GKPY   L     +K + PT+  A   G
Sbjct:  320 AEFELTLTSSKRVQDLSDHVYTVFCIRVCHGDLKWHITRRFRDFSLLRDQL--------------AQELHATDLPSLPPKTWLPTSDAKFIQARQMRLETYLRQLSGRPDAMQSVAFLSFLGALSSPRLE----HEWISGV-------PRDVLHLRILQRCVETGDVLLFQSKNHMSGVQRTMTGAEWDH--VGMVVQAPASNALPKFLLLEATGDGVTLLPLVPRILAYNSCFINYIALRKL---RMPPVSRDTFHRRMHAFVALVEGKPYNMSL-----NKLIRPTETNADLSG 580          
BLAST of NO01G03400 vs. NCBI_GenBank
Match: XP_012202453.1 (hypothetical protein SPRG_08095 [Saprolegnia parasitica CBS 223.65] >KDO26805.1 hypothetical protein SPRG_08095 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 142.1 bits (357), Expect = 5.600e-30
Identity = 96/281 (34.16%), Postives = 142/281 (50.53%), Query Frame = 0
Query:  152 LMPANELPPARFLVRITSTRRKMDAFGKEYVAYDITVKNGLLAWQLCKRYSDFAVMHERLNKHEQXXXXXXXXXGEETILLPLPHLPSKLFQAVQGRKERLEVYLQQVVDRPFSKENPHVLAFLGILSSMSAKLYSIHTDISNTTNNTSRKKRQILHISALGKTLQMGDIVLFQCAHNMAGLQRNVTRSEWDHGRFGAIALVVKRQDGR-EFDLLESTADGVTCWPLSSRISAYATEFTSYMGIRKLEGERTPAMQ---KRLHAFVEQVKGKPYGFPLGAL 429
            L+PA+   P  F + I+S++   D     Y  Y I+V +G L W + +RY DF  +H +L+                  L P   LPS     V  R+  LE +L+Q++  P   E+P  L+FLG +S+ S +               S   R ++H+  L + + +GD+VLF+  + M+G+QR+VT +EWDH     + +VV     R    LLE+T DGVT +PL  RI AY + FT+YM +RKL    T  +      L AF  QV+GKPY   +G L
Sbjct:  326 LVPASSALPTEFELAISSSKTVKDLSEAIYTMYCISVCHGELKWHVTRRYRDFCDLHTQLSSELSMVL---------PALPPKTWLPSVDEAFVSERQIALESFLRQLLPMPGVMESPRFLSFLGAVSTTSLE-----------HERASGIPRDVVHLRILHRFVSVGDLVLFRSKNPMSGVQRSVTGAEWDH-----VGIVVDAPTSRHRLMLLEATGDGVTIFPLVPRILAYTSCFTTYMALRKLSLPPTMDLADVGSELAAFANQVEGKPYVMTIGKL 581          
BLAST of NO01G03400 vs. NCBI_GenBank
Match: XP_024572761.1 (ribonuclease h2 subunit [Plasmopara halstedii] >CEG36392.1 ribonuclease h2 subunit [Plasmopara halstedii])

HSP 1 Score: 141.7 bits (356), Expect = 7.300e-30
Identity = 114/465 (24.52%), Postives = 194/465 (41.72%), Query Frame = 0
Query:  152 LMPANELPPARFLVRITSTRRKM-DAFGKEYVAYDITVKNGLLAWQLCKRYSDFAVMHERLN-KHEQXXXXXXXXXGEETILLPLPHLPSK-LFQAVQG-----RKERLEVYLQQVVDRPFSKENPHVLAFLGILSSMSAKLYSIHTDISNTTNNTSRKKRQILHISALGKTLQMGDIVLFQCAHNMAGLQRNVTRSEWDHGRFGAIALVVKRQDGREFDLLESTADGVTCWPLSSRISAYATEFTSYMGIRKLEGERTPAMQKRLHAFVEQVKGKPYGFPLGALFASKYVAPTQAIASPVGAXXXXXXXXXXXXXXXXFPCSFSSFLSLNDFRGRWRELGTAAVNELFKLGLRSKGERDKQEVAPAVTXXXXXXXXXXXXXXXPRQVKNAAEEEAPGSFFCSNLVAAALREMGVLKAERNINYFLPGAFTAGGEVDEAVRAGWRFGDVILLDVSALEMGKASMV 609
            L+P   +P     + I  TR K+ D   + Y  Y I V      WQL +RY DF  +   L  K+                   LP LP K +F  V+G     RK+ LE +L+Q+++ P    +  + +FLGI+S+                  TSR  + +LH+++L +++ +GDIVLF C    + LQR  T +++DH     + +VV  +      ++E+T++G+  + L  R+ AYA E ++ + +RK+E ER+  +   L  FV +V G  Y                                            S +  L       R     T   +  +++G  S           +                      ++   ++   +FCS+LVAAA +E+G L+ +R  + F PG+F  GGEV+  +R     G  I++D   +E+G ++ +
Sbjct:  553 LVPVYRIPKPALTLNIVETRNKVSDLSQRPYTCYVIDVVFNGTTWQLSRRYKDFNALQTELKCKYPNH---------------TLPMLPPKHMFTPVKGEFIQYRKQELEKFLKQLLEYPDVSTDVVLFSFLGIVSTA-------------RDPETSRNTKSVLHVTSLHESVAIGDIVLFSCRFGASRLQRKFTGAKYDH-----VGIVVPGESQNLLRIMEATSEGIQVYSLKVRLMAYAREVSNVIVVRKIETERSIELMDTLTDFVRRVNGNRY--------------------------------------------SLAEILRFTGKSDRNLARSTLVTHSKYEVGDDSISSNINSSTPSSPV------------------TSSSDSTKSQRKYFCSSLVAAAWKELGWLQTKRKSSSFWPGSFEDGGEVERLLRPELVLGPEIVIDCRIVEVGLSASI 922          
BLAST of NO01G03400 vs. NCBI_GenBank
Match: XP_008621398.1 (hypothetical protein SDRG_16950 [Saprolegnia diclina VS20] >EQC25177.1 hypothetical protein SDRG_16950 [Saprolegnia diclina VS20])

HSP 1 Score: 139.8 bits (351), Expect = 2.800e-29
Identity = 123/471 (26.11%), Postives = 186/471 (39.49%), Query Frame = 0
Query:  152 LMPANELPPARFLVRITSTRRKMDAFGKEYVAYDITVKNGLLAWQLCKRYSDFAVMHERLNKHEQXXXXXXXXXGEETILLPLPHLPSKLF------QAVQGRKERLEVYLQQVVDRPFSKENPHVLAFLGILSSMSAKLYSIHTDISNTTNNTSRKKRQILHISALGKTLQMGDIVLFQCAHNMAGLQRNVTRSEWDHGRFGAIALVVKRQDGR-EFDLLESTADGVTCWPLSSRISAYATEFTSYMGIRKLEGERT---PAMQKRLHAFVEQVKGKPYGFPLGALFASKYVAPTQAIASPVGAXXXXXXXXXXXXXXXXFPCSFSSFLSLNDFRGRWRELGTAAVNELFKLGLRSKGERDKQEVAPAVTXXXXXXXXXXXXXXXPRQVKNAAEEEAPGSFFCSNLVAAALREMGVLKAERNINYFLPGAFTAGGEVDEAV-RAGWRFGDVILLDVSALEMGKASMVEDG 612
            L+PA+   P  F + I+S++   D     Y  Y I+V +G L W + +RY DF  +  +L+                 + + LP LP K +        V  R+  LE +L+Q++  P   E+P  L+FLG +S+ S +               S   R ++H+  L + + +GD+VLF+  ++M+G+QR+VT +EWDH     + +VV+    R    LLE+T DGVT +PL  RI AY + FT YM +RKL    T     +  +L AF  Q    PY   LG L                                                                                                      VK          FFCS L+AAAL+ +G+L  +     F PG F +GG+VD+A+ R G  +G  +++D   LE+      E G
Sbjct:  326 LVPASSALPTEFELAISSSKTVKDLAEAIYTMYCISVCHGELKWHVTRRYRDFCDLQSQLS---------------SDLSMVLPSLPPKTWLPSVDEAFVLERQLALESFLRQLLPMPGVMESPRFLSFLGAVSTTSLE-----------HERASGIPRDVVHLRILHRFVAVGDLVLFRSKNSMSGVQRSVTGAEWDH-----VGIVVEVPHSRHRLMLLEATGDGVTIFPLVPRILAYTSCFTKYMALRKLSLPPTMDLTDVAAQLAAFANQ----PYVMTLGKL------------------------------------------------------------------------------------------------------VKQEETNATLSGFFCSELIAAALKHVGLLDTDLAAANFWPGCFASGGQVDKALARTGASYGPEVVIDCRVLEIAMTHRSEHG 659          
BLAST of NO01G03400 vs. NCBI_GenBank
Match: OWZ19587.1 (Ribonuclease H2 [Phytophthora megakarya])

HSP 1 Score: 138.7 bits (348), Expect = 6.200e-29
Identity = 132/471 (28.03%), Postives = 212/471 (45.01%), Query Frame = 0
Query:  152 LMPANELPPARFLVRITSTRRKM-DAFGKEYVAYDITVKNGLLAWQLCKRYSDFAVMHERLNKHEQXXXXXXXXXGEETILLPLPHLPSK-LFQAVQG-----RKERLEVYLQQVVDRPFSKENPHVLAFLGILSSMSAKLYSIHTDISNTTNNTSRKKRQILHISALGKTLQMGDIVLFQCAHNMAGLQRNVTRSEWDHGRFGAIALVVKRQDGREFDLLESTADGVTCWPLSSRISAYATEFTSYMGIRKLEGERTPAMQKRLHAFVEQVKGKPYGFPLGALFASKYVAPTQAIASPVGAXXXXXXXXXXXXXXXXFPCSFSSFLSLNDFRGRWRELGTAAVNELFKLGLRSKGERDKQ-----EVAPAV-------TXXXXXXXXXXXXXXXPRQVKNAAEEEAPGSFFCSNLVAAALREMGVLKAERNINYFLPGAFTAGGEVDEAVRAGWRFGDVILLDVSALEMG 604
            L+P N +P     + +  T+ K+ D   + Y  Y I V      WQL +RY +F  +   L +              +     LP LPSK +F  V G     RK++LE +L+Q++  P    +  +++FLG++S            IS      S KK  ++H+++L ++++ GDI+LF C    + LQR  T S++DH     + +VV  +      ++E+T++G+  +PL  R+ AYA E ++ + +RK++ ERT  + + L  FV +V G PY                                               S L +                      LRS GE D+       VA +V        XXXXXXXXXXXXXXX         +++   +FCS+LVA+A +E+G L+ +R  + F PG+F  GGEV+  + +G   G   ++D   +E+G
Sbjct:  519 LVPMNRMPQPTIDLAMVGTKNKISDLSQRTYTCYLIDVVFNETTWQLARRYKEFDALRSHLKR--------------KYPATELPGLPSKQMFTPVDGEFINSRKQQLEAFLKQLLLHPIVSTDVLLMSFLGVVS------------ISRDPELGSSKK-TVVHVTSLHESVRCGDIILFSCRFGASRLQRKFTGSKYDH-----VGIVVPGESRFLLRIMEATSEGIQVYPLKPRLMAYAREVSNTIVVRKIQTERTRQLLEVLMEFVRRVDGNPY-----------------------------------------------SILGI----------------------LRSTGESDRNLINSVRVANSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDSKRKYFCSSLVASAWKELGWLETKRKASSFWPGSFEDGGEVERCLASGVTLGPETVIDCRIVEVG 888          
BLAST of NO01G03400 vs. NCBI_GenBank
Match: POM78252.1 (Ribonuclease H2 subunit A [Phytophthora palmivora var. palmivora])

HSP 1 Score: 137.9 bits (346), Expect = 1.100e-28
Identity = 123/458 (26.86%), Postives = 209/458 (45.63%), Query Frame = 0
Query:  152 LMPANELPPARFLVRITSTRRKM-DAFGKEYVAYDITVKNGLLAWQLCKRYSDFAVMHERLNKHEQXXXXXXXXXGEETILLPLPHLPSKLFQAVQG-----RKERLEVYLQQVVDRPFSKENPHVLAFLGILSSMSAKLYSIHTDISNTTNNTSRKKRQILHISALGKTLQMGDIVLFQCAHNMAGLQRNVTRSEWDHGRFGAIALVVKRQDGREFDLLESTADGVTCWPLSSRISAYATEFTSYMGIRKLEGERTPAMQKRLHAFVEQVKGKPYGFPLGALFASKYVAPTQAIASPVGAXXXXXXXXXXXXXXXXFPCSFSSFLSLNDFRGRWRELGTAAVNELFKLGLRSKGERDKQEVAPAVTXXXXXXXXXXXXXXXPRQVKNAAEEEAPGSFFCSNLVAAALREMGVLKAERNINYFLPGAFTAGGEVDEAVRAGWRFGDVILLDVSALEMG 604
            L+P N +P     + I  T+ K+ D   + + +Y I V      WQL +RY +F  +   L K              +T+L  LP  P  +F  V G     RK++LE +L+Q++  P    +  +++FLG++S              +        K+ ++H+++L  ++  GDI+LF C    + LQR  T S++DH     + +VV  +      ++E+T++G+  + L  R+ AY+ E ++ + +RK++ ERTP + + L  FV +V+G PY     ++F                                                G  R  G +  N +  + +    +           XXXXXXXXXXXXXXX    K+   +++   +FCS+LVAAA +E+G L+ +R  + F PG+F  GGEV+  +  G   G   ++D   +E+G
Sbjct:  521 LVPMNRMPQPTIDLAIVGTKNKVSDLSQRTFTSYLIDVVFNDTTWQLARRYKEFDALRSHLKKKY-----------PDTMLPGLP--PKHVFTPVDGEFINNRKQQLEAFLKQLLLHPIVSTDVLLMSFLGVVS-------------ISRDPELGYSKKSVIHVTSLHDSVGCGDIILFSCRFGASRLQRKFTGSKYDH-----VGIVVPGESRFLLRIMEATSEGIQVYALKPRLMAYSREVSNTIVVRKMQTERTPELLEVLMEFVHRVEGNPY-----SIF------------------------------------------------GILRSTGESDRNIINSVRVAGNVDXXXXXXXXXXXXXXXXXXXXXXXXXXXDSTKS---QDSKRKYFCSSLVAAAWKELGWLQTKRKSSSFWPGSFEDGGEVERCLAQGVALGPETVIDCRIVEVG 891          
BLAST of NO01G03400 vs. NCBI_GenBank
Match: EWM29259.1 (ph domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 136.3 bits (342), Expect = 3.100e-28
Identity = 85/224 (37.95%), Postives = 116/224 (51.79%), Query Frame = 0
Query:  383 AYATEFTSYMGIRKLEGERTPAMQKRLHAFVEQVKGKPYGFPLGALFASKYVAPTQAIASPVGAXXXXXXXXXXXXXXXXFPCSFSSFLSLNDFRGRWRELGTAAVNELFKLGLRSKGERDKQEVAPAVTXXXXXXXXXXXXXXXPRQVKNAAEEEAPGSFFCSNLVAAALREMGVLKAERNINYFLPGAFTAGGEVDEAVRAGWRFGDVILLDVSALEMGKAS 607
            A+  +FTSYMG+RKL+G+RT AM+K+L  FVE++ G+PYGFPL  LFA KY+     +A PV A                    +  FL+      R R       +++  L   +  + D       V                    K   +      FFCSNLVAAALREM VLKA+ N +YF PGAFT GGE+D+A R G+   DV+L+D + LE+G+A+
Sbjct:   28 AWQLKFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVA-PVTAYGLPSPKSNTWHSNLRSVPFYPDFLN-----NRRRH------SKVTALSASNSSQADSSSGMEVVE-------------------KARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRAT 220          
BLAST of NO01G03400 vs. NCBI_GenBank
Match: XP_008873665.1 (hypothetical protein H310_09386 [Aphanomyces invadans] >ETV97456.1 hypothetical protein H310_09386 [Aphanomyces invadans])

HSP 1 Score: 134.4 bits (337), Expect = 1.200e-27
Identity = 90/270 (33.33%), Postives = 139/270 (51.48%), Query Frame = 0
Query:  161 ARFLVRITSTRRKMDAFGKEYVAYDITVKNGLLAWQLCKRYSDFAVMHERLNKHEQXXXXXXXXXGEETILLPLPHLPSKLFQAVQGRKERLEVYLQQVVDRPFSKENPHVLAFLGILSSMSAKLYSIHTDISNTTNNTSRKKRQILHISALGKTLQMGDIVLFQCAHNMAGLQRNVTRSEWDHGRFGAIALVVKRQDGREFDLLESTADGVTCWPLSSRISAYATEFTSYMGIRKLE--GERTPAMQKRLHAFVEQVKGKPYGFPLGAL 429
            A+F + +TS +R  D     Y  + ITV +G L W + +R+ DF  + E+L +             +  +L P   LP+   + +Q R+ RLE +L+Q+  RP + ++   L+FLG +SS   +    H  IS          R ++H+  L + ++ GDI+LFQ  + M+G+QR +T +EWDH      A   +     +F LLE+T DGVT  PL  RI AY + F +Y+ +RKL           +R+ AFV  V+GKPY   L  L
Sbjct:  336 AQFELTLTSCKRVQDLSDHVYTVFCITVCHGDLKWHISRRFRDFVQLREQLVQE-------LPRAMDLPVLPPKTWLPTIDVKFIQERQLRLEHFLRQLSLRPDTMQSVAFLSFLGAVSSPRLE----HEWISGV-------PRDVIHLRILHRYVETGDILLFQSKNPMSGVQRTMTGAEWDHVAMIVEAPQTEPNRPPKFLLLEATGDGVTLLPLVPRILAYNSCFINYIALRKLRMPPRHRDTFHRRMQAFVALVEGKPYSMTLNKL 587          
The following BLAST results are available for this feature:
BLAST of NO01G03400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856064.14.200e-9446.92ph domain-containing protein, partial [Nannochloro... [more]
OQR89379.11.900e-3327.33ribonuclease H2 subunit A [Achlya hypogyna][more]
XP_009838886.15.100e-3133.45hypothetical protein H257_13129 [Aphanomyces astac... [more]
XP_012202453.15.600e-3034.16hypothetical protein SPRG_08095 [Saprolegnia paras... [more]
XP_024572761.17.300e-3024.52ribonuclease h2 subunit [Plasmopara halstedii] >CE... [more]
XP_008621398.12.800e-2926.11hypothetical protein SDRG_16950 [Saprolegnia dicli... [more]
OWZ19587.16.200e-2928.03Ribonuclease H2 [Phytophthora megakarya][more]
POM78252.11.100e-2826.86Ribonuclease H2 subunit A [Phytophthora palmivora ... [more]
EWM29259.13.100e-2837.95ph domain-containing [Nannochloropsis gaditana][more]
XP_008873665.11.200e-2733.33hypothetical protein H310_09386 [Aphanomyces invad... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007977NSK007977Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03400.1NO01G03400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G03400.2NO01G03400.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577043gene_342Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100029g21gene1355Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03400.1NO01G03400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G03400.2NO01G03400.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03400 ID=NO01G03400|Name=NO01G03400|organism=Nannochloropsis oceanica|type=gene|length=2109bp
AACACAGCTGCAGCGGCAACAGCACGCAATGGCCCACTTTACGGACCTAC
CTCTTCTCGTGCCGTTTCCCCCGTTTCCCCGGACCCCACTTCACCAGCAG
CGAGTCCTTATCCAGCTCCCACCGTCAACCGGATCATCCCTCTTCTCGCC
GATAGTCATATGTATATATTTACCGGAGAGCACATCAAAAACGCGGGTGG
GCGAGGTCAAGGGCGCCTTGTTTCAAGCCCTAGCTTTAGCACCGGCTGTC
ACCACCACGACTACCAGCGTCCCGGAGTCCCAGAGCAACGAATCATGGTG
CAACCTGACTCTAGGCAAGGCCCCCACATTCCATCCGACCGCCAAACAAA
GTGACGTTCAACCCTTGCTGACACGCGGGCCTAATTGTTACGTTCTGCTA
CCGGCCGAGCTTCAAGGACAGGGATCCATCACCTTCCTGGATGACAACGA
CCTGGTGTCTGTTGCACCACGAGAATGGTGTTTAATGCCTGCCAATGAAT
TACCACCCGCACGTTTCCTAGTCCGGATCACAAGTACAAGGAGGAAAATG
GATGCATTTGGTAAGGAGTATGTCGCCTATGACATCACTGTCAAAAACGG
TCTCTTGGCCTGGCAACTCTGCAAGCGCTATTCTGACTTTGCCGTCATGC
ATGAAAGGCTCAATAAACACGAGCAGCAGCAACGGCAACAGCTCCAGCAG
CAAGGAGAAGAAACAATTCTTTTACCCCTTCCTCATCTTCCATCGAAGCT
CTTTCAGGCCGTCCAAGGCAGGAAAGAACGCCTCGAAGTCTACCTTCAGC
AAGTGGTGGATCGACCGTTCTCAAAGGAAAATCCTCATGTGCTAGCCTTC
CTAGGCATCCTATCATCTATGAGTGCCAAGCTTTATTCCATCCACACCGA
CATAAGTAACACTACCAACAACACGTCAAGGAAAAAACGGCAGATTTTGC
ACATTTCAGCGTTAGGGAAAACGCTGCAAATGGGGGATATTGTCTTGTTT
CAATGTGCGCATAACATGGCCGGGTTGCAGCGGAATGTGACGCGGTCCGA
GTGGGACCATGgtaggtttggggcaagtacgtatggctgggtctaaactt
ctcccctgatgacacgcttatcccaatcttatcgaagcggatattgtctt
gactgtccatactgttccttcggctcgtaggtgtcgaattcccaagctaa
ttttccaatcaaccttccttttcgttcctacatctcatcttcttccatcc
atttccccttcttcccccttcaacagTAGCCCTCGTTGTCAAGAGACAAG
ACGGCCGTGAGTTCGACTTGCTGGAAAGCACCGCTGACGGTGTCACGTGT
TGGCCTCTTTCTTCTCGTATAAGCGCTTATGCCACCGAGTTCACCTCCTA
CATGGGCATCCGCAAGCTGGAGGGAGAACGAACACCCGCAATGCAAAAAC
GATTGCATGCATTCGTCGAGCAAGTAAAGGGTAAGCCATACGGGTTTCCG
CTCGGCGCATTGTTCGCGAGTAAATATGTGGCGCCCACCCAGGCGATTGC
TTCACCTGTGGGTGCTGGGCCAATATCGGAAGGAGATTCTTCTTCTTCGA
TCTCCTCCTCCTCCTTCCCTTGTTCCTTCTCGTCTTTTTTATCTCTCAAC
GATTTTCGCGGACGCTGGCGGGAACTAGGGACTGCTGCCGTTAATGAACT
TTTTAAATTGGGCCTGAGAAGTAAAGGAGAAAGGGATAAACAGGAAGTAG
CACCAGCAGTAACAAAAGCAGCTCCAGCAGTAACAAAAGCAGCACCAGCA
GCTAGCCCCCCCCGACAAGTAAAGAACGCCGCTGAAGAGGAAGCTCCAGG
AAGCTTTTTCTGCAGTAATCTAGTCGCTGCGGCCCTGCGTGAGATGGGCG
TGCTAAAGGCCGAGAGAAACATAAATTATTTCTTGCCCGGGGCATTCACG
GCGGGAGGGGAGGTGGATGAGGCAGTGAGGGCAGGATGGAGGTTTGGAGA
TGTTATATTGTTGGATGTGTCGGCGCTTGAGATGGGCAAGGCGTCAATGG
TAGAAGATGGTTGAGATGAATAATTGAGTCGTGTATAAAGAAAGTGATTT
GAAAAAAGG
back to top

protein sequence of NO01G03400.1

>NO01G03400.1-protein ID=NO01G03400.1-protein|Name=NO01G03400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=612bp
MAHFTDLPLLVPFPPFPRTPLHQQRVLIQLPPSTGSSLFSPIVICIYLPE
STSKTRVGEVKGALFQALALAPAVTTTTTSVPESQSNESWCNLTLGKAPT
FHPTAKQSDVQPLLTRGPNCYVLLPAELQGQGSITFLDDNDLVSVAPREW
CLMPANELPPARFLVRITSTRRKMDAFGKEYVAYDITVKNGLLAWQLCKR
YSDFAVMHERLNKHEQQQRQQLQQQGEETILLPLPHLPSKLFQAVQGRKE
RLEVYLQQVVDRPFSKENPHVLAFLGILSSMSAKLYSIHTDISNTTNNTS
RKKRQILHISALGKTLQMGDIVLFQCAHNMAGLQRNVTRSEWDHGRFGAI
ALVVKRQDGREFDLLESTADGVTCWPLSSRISAYATEFTSYMGIRKLEGE
RTPAMQKRLHAFVEQVKGKPYGFPLGALFASKYVAPTQAIASPVGAGPIS
EGDSSSSISSSSFPCSFSSFLSLNDFRGRWRELGTAAVNELFKLGLRSKG
ERDKQEVAPAVTKAAPAVTKAAPAASPPRQVKNAAEEEAPGSFFCSNLVA
AALREMGVLKAERNINYFLPGAFTAGGEVDEAVRAGWRFGDVILLDVSAL
EMGKASMVEDG*
back to top

protein sequence of NO01G03400.2

>NO01G03400.2-protein ID=NO01G03400.2-protein|Name=NO01G03400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=607bp
MAHFTDLPLLVPFPPFPRTPLHQQRVLIQLPPSTGSSLFSPIVICIYLPE
STSKTRVGEVKGALFQALALAPAVTTTTTSVPESQSNESWCNLTLGKAPT
FHPTAKQSDVQPLLTRGPNCYVLLPAELQGQGSITFLDDNDLVSVAPREW
CLMPANELPPARFLVRITSTRRKMDAFGKEYVAYDITVKNGLLAWQLCKR
YSDFAVMHERLNKHEQQQRQQLQQQGEETILLPLPHLPSKLFQAVQGRKE
RLEVYLQQVVDRPFSKENPHVLAFLGILSSMSAKLYSIHTDISNTTNNTS
RKKRQILHISALGKTLQMGDIVLFQCAHNMAGLQRNVTRSEWDHVALVVK
RQDGREFDLLESTADGVTCWPLSSRISAYATEFTSYMGIRKLEGERTPAM
QKRLHAFVEQVKGKPYGFPLGALFASKYVAPTQAIASPVGAGPISEGDSS
SSISSSSFPCSFSSFLSLNDFRGRWRELGTAAVNELFKLGLRSKGERDKQ
EVAPAVTKAAPAVTKAAPAASPPRQVKNAAEEEAPGSFFCSNLVAAALRE
MGVLKAERNINYFLPGAFTAGGEVDEAVRAGWRFGDVILLDVSALEMGKA
SMVEDG*
back to top
Synonyms
Publications