NO01G03400.2, NO01G03400.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03400.2
Unique NameNO01G03400.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1894
Alignment locationchr1:889462..891570 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:889462..891570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03400.2 vs.
Match: XP_005856064.1 (ph domain-containing protein, partial [Nannochloropsis gaditana CCMP526]; EKU20295.1 ph domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 360.9 bits (925), Expect = 7.600e-96
Identity = 210/436 (48.17%), Postives = 287/436 (65.83%), Query Frame = 0 
Query:  171 RRKMDAFGKEYVAYDITVKNGLLAWQLCKRYSDFAVMHERLNKHEQQQRQQLQQQGEETILLPLPHLPSKLF----QAVQGRKERLEVYLQQVVDRPFSKENPHVLAFLGILSSMSAKLYSIHTDISNTTNNTSRKKRQILHISALGKTLQMGDIVLFQCAHNMAGLQRNVTRSEWDHVALVVKRQDGREFDLLESTADGVTCWPLSSRISAYATEFTSYMGIRKLEGERTPAMQKRLHAFVEQVKGKPYGFPLGALFASKYVAPTQAIASPVGAGPISEGDSSSSISSSSFPCSFSSFLSLNDFRGRWRELGTAAVNELFKLGLRSKGERDKQEVAPAVTKAAPAVTKAAPAASPPRQVKNAAEE-EAPGSFFCSNLVAAALREMGVLKAERNINYFLPGAFTAGGEVDEAVRAGWRFGDVILLDVSALEMGKAS 602
            R K DAFGKEYVA+ I VKNG LAWQL KR+S+FA MH +  +H +Q+ Q+  ++    +   LP LP +L+    +++ GR++ LEVYLQ+++D P + E+PHVLAFLGI+SS+SA+L S   + +  +N  + K+R+I+H+S+L   L+MGDI+LFQCAH +AGLQR VTR+EWDHVALVVKRQDGR  DLLEST DGVTC PLS+R++AYATEFTSYMG+RKL+G+RT AM+K+L  FVE++ G+PYGFPL  LFA KY+     +A     G         S  S+++  +  S     DF                   L ++    K      VT  + + +  A ++S    V+ A+ +      FFCSNLVAAALREM VLKA+ N +YF PGAFT GGE+D+A R G+   DV+L+D + LE+G+A+
Sbjct:    1 RIKTDAFGKEYVAFQIGVKNGNLAWQLSKRFSEFASMHGKFCRHLEQRLQKWPEESRH-LHAYLPALPPRLWHKSAESLDGRQKDLEVYLQRLLDVPIATEDPHVLAFLGIVSSLSAELASPSAEFNAHSN--AMKQRKIIHVSSLNGDLEMGDIILFQCAHALAGLQRGVTRAEWDHVALVVKRQDGRGCDLLESTCDGVTCVPLSARMAAYATEFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYG-------LPSPKSNTWHSNLRSVPFYPDF-------------------LNNRRRHSK------VTALSASNSSQADSSSGMEVVEKASRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRAT 401
The following BLAST results are available for this feature:
BLAST of NO01G03400.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856064.17.600e-9648.17ph domain-containing protein, partial [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03400NO01G03400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03400.2NO01G03400.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03400.2.cds1NO01G03400.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03400.2.cds2NO01G03400.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03400.2 ID=NO01G03400.2|Name=NO01G03400.2|organism=Nannochloropsis oceanica|type=mRNA|length=1894bp
AACACAGCTGCAGCGGCAACAGCACGCAATGGCCCACTTTACGGACCTAC
CTCTTCTCGTGCCGTTTCCCCCGTTTCCCCGGACCCCACTTCACCAGCAG
CGAGTCCTTATCCAGCTCCCACCGTCAACCGGATCATCCCTCTTCTCGCC
GATAGTCATATGTATATATTTACCGGAGAGCACATCAAAAACGCGGGTGG
GCGAGGTCAAGGGCGCCTTGTTTCAAGCCCTAGCTTTAGCACCGGCTGTC
ACCACCACGACTACCAGCGTCCCGGAGTCCCAGAGCAACGAATCATGGTG
CAACCTGACTCTAGGCAAGGCCCCCACATTCCATCCGACCGCCAAACAAA
GTGACGTTCAACCCTTGCTGACACGCGGGCCTAATTGTTACGTTCTGCTA
CCGGCCGAGCTTCAAGGACAGGGATCCATCACCTTCCTGGATGACAACGA
CCTGGTGTCTGTTGCACCACGAGAATGGTGTTTAATGCCTGCCAATGAAT
TACCACCCGCACGTTTCCTAGTCCGGATCACAAGTACAAGGAGGAAAATG
GATGCATTTGGTAAGGAGTATGTCGCCTATGACATCACTGTCAAAAACGG
TCTCTTGGCCTGGCAACTCTGCAAGCGCTATTCTGACTTTGCCGTCATGC
ATGAAAGGCTCAATAAACACGAGCAGCAGCAACGGCAACAGCTCCAGCAG
CAAGGAGAAGAAACAATTCTTTTACCCCTTCCTCATCTTCCATCGAAGCT
CTTTCAGGCCGTCCAAGGCAGGAAAGAACGCCTCGAAGTCTACCTTCAGC
AAGTGGTGGATCGACCGTTCTCAAAGGAAAATCCTCATGTGCTAGCCTTC
CTAGGCATCCTATCATCTATGAGTGCCAAGCTTTATTCCATCCACACCGA
CATAAGTAACACTACCAACAACACGTCAAGGAAAAAACGGCAGATTTTGC
ACATTTCAGCGTTAGGGAAAACGCTGCAAATGGGGGATATTGTCTTGTTT
CAATGTGCGCATAACATGGCCGGGTTGCAGCGGAATGTGACGCGGTCCGA
GTGGGACCATGTAGCCCTCGTTGTCAAGAGACAAGACGGCCGTGAGTTCG
ACTTGCTGGAAAGCACCGCTGACGGTGTCACGTGTTGGCCTCTTTCTTCT
CGTATAAGCGCTTATGCCACCGAGTTCACCTCCTACATGGGCATCCGCAA
GCTGGAGGGAGAACGAACACCCGCAATGCAAAAACGATTGCATGCATTCG
TCGAGCAAGTAAAGGGTAAGCCATACGGGTTTCCGCTCGGCGCATTGTTC
GCGAGTAAATATGTGGCGCCCACCCAGGCGATTGCTTCACCTGTGGGTGC
TGGGCCAATATCGGAAGGAGATTCTTCTTCTTCGATCTCCTCCTCCTCCT
TCCCTTGTTCCTTCTCGTCTTTTTTATCTCTCAACGATTTTCGCGGACGC
TGGCGGGAACTAGGGACTGCTGCCGTTAATGAACTTTTTAAATTGGGCCT
GAGAAGTAAAGGAGAAAGGGATAAACAGGAAGTAGCACCAGCAGTAACAA
AAGCAGCTCCAGCAGTAACAAAAGCAGCACCAGCAGCTAGCCCCCCCCGA
CAAGTAAAGAACGCCGCTGAAGAGGAAGCTCCAGGAAGCTTTTTCTGCAG
TAATCTAGTCGCTGCGGCCCTGCGTGAGATGGGCGTGCTAAAGGCCGAGA
GAAACATAAATTATTTCTTGCCCGGGGCATTCACGGCGGGAGGGGAGGTG
GATGAGGCAGTGAGGGCAGGATGGAGGTTTGGAGATGTTATATTGTTGGA
TGTGTCGGCGCTTGAGATGGGCAAGGCGTCAATGGTAGAAGATGGTTGAG
ATGAATAATTGAGTCGTGTATAAAGAAAGTGATTTGAAAAAAGG
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protein sequence of NO01G03400.2

>NO01G03400.2-protein ID=NO01G03400.2-protein|Name=NO01G03400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=607bp
MAHFTDLPLLVPFPPFPRTPLHQQRVLIQLPPSTGSSLFSPIVICIYLPE
STSKTRVGEVKGALFQALALAPAVTTTTTSVPESQSNESWCNLTLGKAPT
FHPTAKQSDVQPLLTRGPNCYVLLPAELQGQGSITFLDDNDLVSVAPREW
CLMPANELPPARFLVRITSTRRKMDAFGKEYVAYDITVKNGLLAWQLCKR
YSDFAVMHERLNKHEQQQRQQLQQQGEETILLPLPHLPSKLFQAVQGRKE
RLEVYLQQVVDRPFSKENPHVLAFLGILSSMSAKLYSIHTDISNTTNNTS
RKKRQILHISALGKTLQMGDIVLFQCAHNMAGLQRNVTRSEWDHVALVVK
RQDGREFDLLESTADGVTCWPLSSRISAYATEFTSYMGIRKLEGERTPAM
QKRLHAFVEQVKGKPYGFPLGALFASKYVAPTQAIASPVGAGPISEGDSS
SSISSSSFPCSFSSFLSLNDFRGRWRELGTAAVNELFKLGLRSKGERDKQ
EVAPAVTKAAPAVTKAAPAASPPRQVKNAAEEEAPGSFFCSNLVAAALRE
MGVLKAERNINYFLPGAFTAGGEVDEAVRAGWRFGDVILLDVSALEMGKA
SMVEDG*
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mRNA from alignment at chr1:889462..891570+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03400.2 ID=NO01G03400.2|Name=NO01G03400.2|organism=Nannochloropsis oceanica|type=mRNA|length=2109bp|location=Sequence derived from alignment at chr1:889462..891570+ (Nannochloropsis oceanica)
AACACAGCTGCAGCGGCAACAGCACGCAATGGCCCACTTTACGGACCTAC
CTCTTCTCGTGCCGTTTCCCCCGTTTCCCCGGACCCCACTTCACCAGCAG
CGAGTCCTTATCCAGCTCCCACCGTCAACCGGATCATCCCTCTTCTCGCC
GATAGTCATATGTATATATTTACCGGAGAGCACATCAAAAACGCGGGTGG
GCGAGGTCAAGGGCGCCTTGTTTCAAGCCCTAGCTTTAGCACCGGCTGTC
ACCACCACGACTACCAGCGTCCCGGAGTCCCAGAGCAACGAATCATGGTG
CAACCTGACTCTAGGCAAGGCCCCCACATTCCATCCGACCGCCAAACAAA
GTGACGTTCAACCCTTGCTGACACGCGGGCCTAATTGTTACGTTCTGCTA
CCGGCCGAGCTTCAAGGACAGGGATCCATCACCTTCCTGGATGACAACGA
CCTGGTGTCTGTTGCACCACGAGAATGGTGTTTAATGCCTGCCAATGAAT
TACCACCCGCACGTTTCCTAGTCCGGATCACAAGTACAAGGAGGAAAATG
GATGCATTTGGTAAGGAGTATGTCGCCTATGACATCACTGTCAAAAACGG
TCTCTTGGCCTGGCAACTCTGCAAGCGCTATTCTGACTTTGCCGTCATGC
ATGAAAGGCTCAATAAACACGAGCAGCAGCAACGGCAACAGCTCCAGCAG
CAAGGAGAAGAAACAATTCTTTTACCCCTTCCTCATCTTCCATCGAAGCT
CTTTCAGGCCGTCCAAGGCAGGAAAGAACGCCTCGAAGTCTACCTTCAGC
AAGTGGTGGATCGACCGTTCTCAAAGGAAAATCCTCATGTGCTAGCCTTC
CTAGGCATCCTATCATCTATGAGTGCCAAGCTTTATTCCATCCACACCGA
CATAAGTAACACTACCAACAACACGTCAAGGAAAAAACGGCAGATTTTGC
ACATTTCAGCGTTAGGGAAAACGCTGCAAATGGGGGATATTGTCTTGTTT
CAATGTGCGCATAACATGGCCGGGTTGCAGCGGAATGTGACGCGGTCCGA
GTGGGACCATGGTAGGTTTGGGGCAAGTACGTATGGCTGGGTCTAAACTT
CTCCCCTGATGACACGCTTATCCCAATCTTATCGAAGCGGATATTGTCTT
GACTGTCCATACTGTTCCTTCGGCTCGTAGGTGTCGAATTCCCAAGCTAA
TTTTCCAATCAACCTTCCTTTTCGTTCCTACATCTCATCTTCTTCCATCC
ATTTCCCCTTCTTCCCCCTTCAACAGTAGCCCTCGTTGTCAAGAGACAAG
ACGGCCGTGAGTTCGACTTGCTGGAAAGCACCGCTGACGGTGTCACGTGT
TGGCCTCTTTCTTCTCGTATAAGCGCTTATGCCACCGAGTTCACCTCCTA
CATGGGCATCCGCAAGCTGGAGGGAGAACGAACACCCGCAATGCAAAAAC
GATTGCATGCATTCGTCGAGCAAGTAAAGGGTAAGCCATACGGGTTTCCG
CTCGGCGCATTGTTCGCGAGTAAATATGTGGCGCCCACCCAGGCGATTGC
TTCACCTGTGGGTGCTGGGCCAATATCGGAAGGAGATTCTTCTTCTTCGA
TCTCCTCCTCCTCCTTCCCTTGTTCCTTCTCGTCTTTTTTATCTCTCAAC
GATTTTCGCGGACGCTGGCGGGAACTAGGGACTGCTGCCGTTAATGAACT
TTTTAAATTGGGCCTGAGAAGTAAAGGAGAAAGGGATAAACAGGAAGTAG
CACCAGCAGTAACAAAAGCAGCTCCAGCAGTAACAAAAGCAGCACCAGCA
GCTAGCCCCCCCCGACAAGTAAAGAACGCCGCTGAAGAGGAAGCTCCAGG
AAGCTTTTTCTGCAGTAATCTAGTCGCTGCGGCCCTGCGTGAGATGGGCG
TGCTAAAGGCCGAGAGAAACATAAATTATTTCTTGCCCGGGGCATTCACG
GCGGGAGGGGAGGTGGATGAGGCAGTGAGGGCAGGATGGAGGTTTGGAGA
TGTTATATTGTTGGATGTGTCGGCGCTTGAGATGGGCAAGGCGTCAATGG
TAGAAGATGGTTGAGATGAATAATTGAGTCGTGTATAAAGAAAGTGATTT
GAAAAAAGG
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Coding sequence (CDS) from alignment at chr1:889462..891570+

>NO01G03400.2 ID=NO01G03400.2|Name=NO01G03400.2|organism=Nannochloropsis oceanica|type=CDS|length=1821bp|location=Sequence derived from alignment at chr1:889462..891570+ (Nannochloropsis oceanica)
ATGGCCCACTTTACGGACCTACCTCTTCTCGTGCCGTTTCCCCCGTTTCC
CCGGACCCCACTTCACCAGCAGCGAGTCCTTATCCAGCTCCCACCGTCAA
CCGGATCATCCCTCTTCTCGCCGATAGTCATATGTATATATTTACCGGAG
AGCACATCAAAAACGCGGGTGGGCGAGGTCAAGGGCGCCTTGTTTCAAGC
CCTAGCTTTAGCACCGGCTGTCACCACCACGACTACCAGCGTCCCGGAGT
CCCAGAGCAACGAATCATGGTGCAACCTGACTCTAGGCAAGGCCCCCACA
TTCCATCCGACCGCCAAACAAAGTGACGTTCAACCCTTGCTGACACGCGG
GCCTAATTGTTACGTTCTGCTACCGGCCGAGCTTCAAGGACAGGGATCCA
TCACCTTCCTGGATGACAACGACCTGGTGTCTGTTGCACCACGAGAATGG
TGTTTAATGCCTGCCAATGAATTACCACCCGCACGTTTCCTAGTCCGGAT
CACAAGTACAAGGAGGAAAATGGATGCATTTGGTAAGGAGTATGTCGCCT
ATGACATCACTGTCAAAAACGGTCTCTTGGCCTGGCAACTCTGCAAGCGC
TATTCTGACTTTGCCGTCATGCATGAAAGGCTCAATAAACACGAGCAGCA
GCAACGGCAACAGCTCCAGCAGCAAGGAGAAGAAACAATTCTTTTACCCC
TTCCTCATCTTCCATCGAAGCTCTTTCAGGCCGTCCAAGGCAGGAAAGAA
CGCCTCGAAGTCTACCTTCAGCAAGTGGTGGATCGACCGTTCTCAAAGGA
AAATCCTCATGTGCTAGCCTTCCTAGGCATCCTATCATCTATGAGTGCCA
AGCTTTATTCCATCCACACCGACATAAGTAACACTACCAACAACACGTCA
AGGAAAAAACGGCAGATTTTGCACATTTCAGCGTTAGGGAAAACGCTGCA
AATGGGGGATATTGTCTTGTTTCAATGTGCGCATAACATGGCCGGGTTGC
AGCGGAATGTGACGCGGTCCGAGTGGGACCATGTAGCCCTCGTTGTCAAG
AGACAAGACGGCCGTGAGTTCGACTTGCTGGAAAGCACCGCTGACGGTGT
CACGTGTTGGCCTCTTTCTTCTCGTATAAGCGCTTATGCCACCGAGTTCA
CCTCCTACATGGGCATCCGCAAGCTGGAGGGAGAACGAACACCCGCAATG
CAAAAACGATTGCATGCATTCGTCGAGCAAGTAAAGGGTAAGCCATACGG
GTTTCCGCTCGGCGCATTGTTCGCGAGTAAATATGTGGCGCCCACCCAGG
CGATTGCTTCACCTGTGGGTGCTGGGCCAATATCGGAAGGAGATTCTTCT
TCTTCGATCTCCTCCTCCTCCTTCCCTTGTTCCTTCTCGTCTTTTTTATC
TCTCAACGATTTTCGCGGACGCTGGCGGGAACTAGGGACTGCTGCCGTTA
ATGAACTTTTTAAATTGGGCCTGAGAAGTAAAGGAGAAAGGGATAAACAG
GAAGTAGCACCAGCAGTAACAAAAGCAGCTCCAGCAGTAACAAAAGCAGC
ACCAGCAGCTAGCCCCCCCCGACAAGTAAAGAACGCCGCTGAAGAGGAAG
CTCCAGGAAGCTTTTTCTGCAGTAATCTAGTCGCTGCGGCCCTGCGTGAG
ATGGGCGTGCTAAAGGCCGAGAGAAACATAAATTATTTCTTGCCCGGGGC
ATTCACGGCGGGAGGGGAGGTGGATGAGGCAGTGAGGGCAGGATGGAGGT
TTGGAGATGTTATATTGTTGGATGTGTCGGCGCTTGAGATGGGCAAGGCG
TCAATGGTAGAAGATGGTTGA
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Synonyms
Publications