NO01G03390, NO01G03390 (gene) Nannochloropsis oceanica

Overview
NameNO01G03390
Unique NameNO01G03390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2278
Alignment locationchr1:887095..889372 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:887095..889372 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G03390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007979NSK007979Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03390.1NO01G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627820gene_341Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100029g20gene1356Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03390.1NO01G03390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03390 ID=NO01G03390|Name=NO01G03390|organism=Nannochloropsis oceanica|type=gene|length=2278bp
GACGATTAACCGCCTTGCAATAGAAGCAATCGGTAACGGCAGCCCAAAGA
AAGCGGCATTTCTCATGTCCTGAAACTTGACTAATCGCGGTCAGCTCACT
CTCCATTGCCGGTACAATTGCATATGCTCAGATTCACACGCGAGATGGCA
GATGTCAACGACATCACCGATACCCTCTGGTCCTTCAATCCACCACAACC
CGCTGAGGCGCCCACTTCGCCACGGCCCATCCGCCTGCAGGACATTCCTA
TGCGCATCGTCAACCGTCGTCGACGCTCCACTGAAAACTTCGTGTCGCTC
TCGAGGGCCATACTACCCCCACGTCCAGCTTGTAGGCCTTCCCTGTCCGC
TGCAGCGGCCCGCTACGAAACATTTCAGCCTGTTGCTTCTCTCTTACCAG
CTGTGAACGTGGAAGTCCTTCGACAAAAGGCAGACCTTGCCGAGCTGGAG
GCAAAGAGTCAAAGGAGTACGACCCTCAAAGCTTTAGAgtacgtgctatg
ttatgaagaggccaaatagggaaagccttgtctctcgggaaattacattt
caatcttccccctatatcaccttcattcctcctgtgccttctgtcttaca
aagagattctctttctatgatcgtgaatgagcacaaaatacgcgtctcat
attgtccttccctttgatcactgaataaacatagAGCTAAGCGACGTGCG
GAGCGACAGACAGCCGAGCTAGTCGTGGCAAAGGAACGGCTGGAGCAAGA
CTTGCGACAAGCCACAATCGCCCATCAGAGGCTGACGCATGTCTTTCAGC
GGGTGGTAGAGACCAAACGTAAGGTGGAGGCAAAGCTCAAAAATGAGCAG
CGACAGCAACAACAAAAGCAGGAGGTGGAGGAGGACGAAAAGAAACAGGA
GCAAGCACTGAGGAAAAGAACGACATCTGCCAATCCGACCGCTTCTGCAC
CGCCTTCCCGTGCGACCACCAACGACAACGACGGTGACGACCAAGATGCA
GCACGGGCACAAGATCTACCTCAGGGATTGCATGAGATTCTGGCGCAACG
GGAAGCTGATCTGATGAACCTACAGGTGAAGCTAAAGCGGCAAGGGCAAG
CACGACACACACAGCTCAAGGAATGGGAGGCCGAGTTGCAGGATAAGGAG
GAAAGGGTCCAGCGCGTAGCTGAAAAGCTGCGCAAGCAACGGAGGCACTT
GCAAGTTTGTCATGAGCGATCACAACGGCAGTCGTGGGAGGATAAGGGGC
GCAGATGCCGTGCAGCAAGCAAGTCACCGCGGCGGTCCCTCCCCTCTTCG
CCGCTTAGGGCAAGGCGAGTCCGAGTGGCAGCAGGCATACAGAACCAAGA
TAATCGCAACTCCGCGATAGAGACTGAAGAGGAAAAAGGCGAGGAGAAAA
CAAAACAGCGAGAGCCAGAAGCAGCGGCAGCGGTTGTATCTGTGCAATGG
GAAGGAGCGCCACGTTGTCGGCATTTGCCGCAGTACAGCACCTCCTCAAG
CGCTGTGGATGGCAAGGAAGAAATTGATGTCGCCCTGGACAGCACCATCC
TGCCCCTGTCTGTAACGCAAACCGTCCAAGGCAATAGATTGGTTACGCAA
TATGAGAGGAGTCGTGGCGGTGTAGGAGCGACGACTGATGAGGAAATGAA
AGAACAAAAAGAAACCCGCCTGTTTCGGAATTCAGAAATTATGGCAGCAG
GACCTGCTATTGAAAATTGGGGCCACGAAGAAGGGAGCAAAGGTGACCAT
GACTGTTTGGAAGCAGCAGTCTTTCCAAGTACCGTGGGCTCTAATACCCA
TATTCCTGTTGTACAGCTTGCTCCGCCAGCCATCCCTCAGATTCCGCCAT
CCATGTAAGTTATCGTAATCATGTATCTGTCCACTCTCTCCTACCATCTG
CATTTTCTTATACTTCACACGAACATGCAGATGTGGTAGGATTTTCCGAA
AAGAAATGGCCACGACCCTCGATAAGATTCAGCGAGCTAAGCTCCGCGTC
ACCGAGACTTGTGCTGTCGTGAAAACGGATGGCCGCACCCGCACTTGCAG
CCTACCTCTGCCGCCCCCAAGAGTCCCACTACAAGTCGCCGTTACTACTG
AGTGCAAAAAGATGAAGGACGAAAATGAATTGGAACCAGCAGGCTCGAAA
CGGATACCTCGCATCGGTCAAGGCGAGCGGTTGCAGTGGTTAAGCGCATT
TGACGGACGGCTGGCCAAGAGTATGCGAGAGTTTGAAAAATTGAAAAAAT
GACTGAAAGAAAAACAAAATAAAAAGCG
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protein sequence of NO01G03390.1

>NO01G03390.1-protein ID=NO01G03390.1-protein|Name=NO01G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MLRFTREMADVNDITDTLWSFNPPQPAEAPTSPRPIRLQDIPMRIVNRRR
RSTENFVSLSRAILPPRPACRPSLSAAAARYETFQPVASLLPAVNVEVLR
QKADLAELEAKSQRSTTLKALEAKRRAERQTAELVVAKERLEQDLRQATI
AHQRLTHVFQRVVETKRKVEAKLKNEQRQQQQKQEVEEDEKKQEQALRKR
TTSANPTASAPPSRATTNDNDGDDQDAARAQDLPQGLHEILAQREADLMN
LQVKLKRQGQARHTQLKEWEAELQDKEERVQRVAEKLRKQRRHLQVCHER
SQRQSWEDKGRRCRAASKSPRRSLPSSPLRARRVRVAAGIQNQDNRNSAI
ETEEEKGEEKTKQREPEAAAAVVSVQWEGAPRCRHLPQYSTSSSAVDGKE
EIDVALDSTILPLSVTQTVQGNRLVTQYERSRGGVGATTDEEMKEQKETR
LFRNSEIMAAGPAIENWGHEEGSKGDHDCLEAAVFPSTVGSNTHIPVVQL
APPAIPQIPPSM*
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Synonyms
Publications