NO01G03270, NO01G03270 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G03270 vs. NCBI_GenBank
Match: XP_002183532.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC44714.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 71.2 bits (173), Expect = 5.400e-9 Identity = 61/202 (30.20%), Postives = 100/202 (49.50%), Query Frame = 0 Query: 52 VAFKIKTTKPKRYLVRPNQSILMAGERREVAILM-SPEKQA--EARQEHGQVVMDKFQVVYLPLNKAVCDSF-EKSGDVKEQVGQLERLWQLADKRAVCKLTFEVEIALQEETSTQDLRNTPSTSWAEKNGKPSSAPSSVGELHSPGSVMHFSLTSKQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRELSSHA 250 +AFK+KTT+P+RYLVRPNQ ++ G + IL+ +KQA ++ Q GQ +D + +L + AV F + D L +W ++ ++ S + + ST+ + +P+SA + E SP ++ ++ R++YD+LV F+V LT ERD+L N L+ K L RE+ A Sbjct: 39 LAFKVKTTQPRRYLVRPNQGLIKPGGSETIQILLVEKDKQALMQSFQRLGQSALDHSKDKFLVQSCAVSQQFASQYDDAGTGYDALSTMWTSVTAAGSRTTVSNKKLHVKHVVSDVSIPRS-STASPLRPHEPTSAQTL--ESMSPEQLL------SEVATLRRKYDELVGFSVNLTAERDILNNTLEQAKRDLDREVKKSA 231
BLAST of NO01G03270 vs. NCBI_GenBank
Match: CCA18965.1 (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 70.5 bits (171), Expect = 9.300e-9 Identity = 64/238 (26.89%), Postives = 113/238 (47.48%), Query Frame = 0 Query: 52 VAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSP---EKQAEARQEHGQVVMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLW------QLADKRAVCKLT--------FEVEIALQE-----ETSTQDLRNTP----STSWAEKNGKPSSAPSSV------GELHSPGSVMHFSLTSKQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRELSSHADVGKLGPE 258 +AFK+KTT+P RYLVRPNQ +L+ + + + E+ Q + DKF V + + + +S G KE L ++W +L++K+ C+ +V++ Q T ++D+ +P STS + + + S+ +S EL++ SV +++ R++YD+LV FTV LT +RD+L++ L+ + L+R + KL E Sbjct: 49 IAFKVKTTRPLRYLVRPNQGMLLPDGSASIVVSLQQKDCEELFRLDPSERQTLNDKFLVQSIYIENSFYESVRTRGS-KETADVLTQMWLHTDKSKLSNKKLRCRFVQDSIENNGSKVQLETQPTATYLSTGSRDVSISPRSGLSTSHMQSSFRESNTETSERREFKDNELNTKSSV-------QEVASLRKKYDELVAFTVQLTAQRDVLLSDLEKTRQHLQRATTDVQRHKKLAEE 278
BLAST of NO01G03270 vs. NCBI_GenBank
Match: XP_024577440.1 (hypothetical protein F443_19264 [Plasmopara halstedii] >CEG41071.1 hypothetical protein F443_19264 [Plasmopara halstedii]) HSP 1 Score: 70.5 bits (171), Expect = 9.300e-9 Identity = 63/249 (25.30%), Postives = 108/249 (43.37%), Query Frame = 0 Query: 35 KTLVTVSNPTSDPGLGGVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSPEKQAEARQ---EHGQVVMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLWQLADKRAVCKLTFEVEIALQEETSTQDLRNTPSTSWAEKNGKP-------SSAPSSVGELHSPGSVMHFSL----------------TSKQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRELSSHADVGKLGPE 258 + ++T+ N D VAFK+KTT+P RYLVRPNQ +L + +++ + E + Q+ DKF V + ++ + + K+ KE +L +W DKRA+ E +++ + S +E K S + +P + L T +++ R++YD+LV FTV LT +RD+L++ LD + L++ + V KL E Sbjct: 35 QAVLTIRNVADD---RQVAFKVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLRLDPAERQLANDKFLVQSIYVDDSFYE-MVKTKSTKEMADELTNMWARTDKRALSNKKLRCRFVQDGEDTSRSISPPRVLSTSESPSKTAVTSDLRSQKEEGQETVTTPAQLASALLQDDKSKGVDSRDGGQETIQEIAGLRKKYDELVAFTVQLTAQRDVLMSDLDKTRQALQKSNTDAQRVKKLSEE 279
BLAST of NO01G03270 vs. NCBI_GenBank
Match: OQR91648.1 (hypothetical protein ACHHYP_04517 [Achlya hypogyna]) HSP 1 Score: 69.3 bits (168), Expect = 2.100e-8 Identity = 61/200 (30.50%), Postives = 97/200 (48.50%), Query Frame = 0 Query: 38 VTVSNPTSDPGLGGVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSPEKQAEARQ---EHGQVVMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLWQLADKRAVCKLTFEVEIALQEETSTQDLRNTPS---TSWAEKNGKPSSAPSSVGELHS-PGSVMHFSLTSKQMTE---YRQRYDDLVTFTVALTNER 228 + +SNP+S + VAFK+KTT+P RYLVRPNQ ++ V +++ + E + Q+ DKF V + ++ CD + KE + L LW A+K+A+ E + D+ +TPS ++ E + AP+ + S S S+ + M E R++YD+LV FTV LT +R Sbjct: 692 LVISNPSS---VENVAFKVKTTRPMRYLVRPNQGVIGPNSAATVLVILQQKDCDELLRLDASERQLSNDKFLVQSIGVDAEFCDLLTQK-TAKEVMDDLTTLWATAEKKAISNKKLRCRFV---EGNANDV-STPSQLTSALLETPATNAPAPTPLTTQQSIYASTAEDSIRQEMMAEMAVLRKKYDELVAFTVQLTAQR 883
BLAST of NO01G03270 vs. NCBI_GenBank
Match: XP_008897152.1 (hypothetical protein PPTG_05368 [Phytophthora parasitica INRA-310] >ETI34192.1 hypothetical protein F443_19264 [Phytophthora parasitica P1569] >ETK74561.1 hypothetical protein L915_18689 [Phytophthora parasitica] >ETL27982.1 hypothetical protein L916_18594 [Phytophthora parasitica] >ETL81229.1 hypothetical protein L917_18417 [Phytophthora parasitica] >ETM34431.1 hypothetical protein L914_18504 [Phytophthora parasitica] >ETN17607.1 hypothetical protein PPTG_05368 [Phytophthora parasitica INRA-310] >ETO63077.1 hypothetical protein F444_19218 [Phytophthora parasitica P1976] >ETP04099.1 hypothetical protein F441_19079 [Phytophthora parasitica CJ01A1] >KUF83781.1 Vesicle-associated membrane protein/synaptobrevin-binding protein [Phytophthora nicotianae]) HSP 1 Score: 67.0 bits (162), Expect = 1.000e-7 Identity = 70/288 (24.31%), Postives = 131/288 (45.49%), Query Frame = 0 Query: 6 AIAPS---LLQPPPHLSISPCGKTVVGEAGMAKTLVTVSNPTSDPGLGGVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSPEKQAEARQ---EHGQVVMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLWQLADKRAV------CKLTFEVEIA-------LQEETSTQDLRNTPSTSWAEKNGKPSSAPSSVGELHSPGSVMHFSLTS---------------KQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRELSSHADVGKLGPEDA 260 A+AP+ +L+P LS +T + ++T+ N D +AFK+KTT+P RYLVRPNQ +L + +++ + E + Q+ DKF V + ++ + + K+ KE +L +W DKRA+ C+ + E + S+ ++ + + +E + + + E+ +P + L +++ R++YD+LV FTV LT +RD+L++ LD + QL ++ ++ A K PE++ Sbjct: 9 ALAPNSSVILEPADSLSFHLQPQTA------PQAVLTIRNVADD---RQIAFKVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLRLDPAERQLANDKFLVQSIYVDDSFYE-LVKTKSTKEMADELTNMWARTDKRALSNKKLRCRFVQDGEDTGRPASPPSPQRASSTNVSPAKTAAASESRFQTRQSDEAREEVATPAQLSSALLQDDKPKVAENREGGKDIQEVAALRKKYDELVAFTVQLTAQRDVLMSDLDKTR-QLLQKANTDAQRVKKIPEES 285
BLAST of NO01G03270 vs. NCBI_GenBank
Match: ETP32292.1 (hypothetical protein F442_19042 [Phytophthora parasitica P10297]) HSP 1 Score: 67.0 bits (162), Expect = 1.000e-7 Identity = 70/288 (24.31%), Postives = 131/288 (45.49%), Query Frame = 0 Query: 6 AIAPS---LLQPPPHLSISPCGKTVVGEAGMAKTLVTVSNPTSDPGLGGVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSPEKQAEARQ---EHGQVVMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLWQLADKRAV------CKLTFEVEIA-------LQEETSTQDLRNTPSTSWAEKNGKPSSAPSSVGELHSPGSVMHFSLTS---------------KQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRELSSHADVGKLGPEDA 260 A+AP+ +L+P LS +T + ++T+ N D +AFK+KTT+P RYLVRPNQ +L + +++ + E + Q+ DKF V + ++ + + K+ KE +L +W DKRA+ C+ + E + S+ ++ + + +E + + + E+ +P + L +++ R++YD+LV FTV LT +RD+L++ LD + QL ++ ++ A K PE++ Sbjct: 9 ALAPNSSVILEPADSLSFHLQPQTA------PQAVLTIRNVADD---RQIAFKVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLRLDPAERQLANDKFLVQSIYVDDSFYE-LVKTKSTKEMADELTNMWARTDKRALSNKKLRCRFVQDGEDTGRPASPPSPQRASSTNVSPAKTAAASESRFQTRQSDEAREEVATPAQLSSALLQDDKPKVAENKEGGKDIQEVAALRKKYDELVAFTVQLTAQRDVLMSDLDKTR-QLLQKANTDAQRVKKIPEES 285
BLAST of NO01G03270 vs. NCBI_GenBank
Match: XP_002907537.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY64101.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 67.0 bits (162), Expect = 1.000e-7 Identity = 69/286 (24.13%), Postives = 128/286 (44.76%), Query Frame = 0 Query: 6 AIAPS---LLQPPPHLSISPCGKTVVGEAGMAKTLVTVSNPTSDPGLGGVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSPEKQAEARQ---EHGQVVMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLWQLADKRAV------CKLTFEVEIA-------LQEETSTQDLRNTPSTSWAEKNGKPSSAPSSVGELHSPGSVMHFSLTS---------------KQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRELSSHADVGKLGPE 258 A+AP+ +L+P LS +T + ++T+ N D +AFK+KTT+P RYLVRPNQ +L + +++ + E + Q+ DKF V + ++ + + K+ KE +L +W DKRA+ C+ + E + S+ ++ +T+ +E + + + E+ +P + L +++ R++YD+LV FTV LT +RD+L++ LD + L++ + V K+ E Sbjct: 9 ALAPNSSVILEPADSLSFHLQPQTA------PQAVLTIRNVADD---RQIAFKVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLRLDPAERQLANDKFLVQSIYVDDSFYE-LVKTKSTKEMADELTNMWARTDKRALSNKKLRCRFVQDGEDTGRPASPPSPQRPSSTNVSPAKTTATSESRFQTRQSDEAREEVTTPMQLSSALLQDDKPKVAESREGGKDIQEVAALRKKYDELVAFTVQLTAQRDVLMSDLDKTRQLLQKANTDAQRVKKISEE 284
BLAST of NO01G03270 vs. NCBI_GenBank
Match: CCA24835.1 (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 65.9 bits (159), Expect = 2.300e-7 Identity = 59/216 (27.31%), Postives = 105/216 (48.61%), Query Frame = 0 Query: 52 VAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSP---EKQAEARQEHGQVVMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLW------QLADKRAVCKLT--------FEVEIALQE-----ETSTQDLRNTP----STSWAEKNGKPSSAPSSV------GELHSPGSVMHFSLTSKQMTEYRQRYDDLVTFTVALTNERDLLINALD 236 +AFK+KTT+P RYLVRPNQ +L+ + + + E+ Q + DKF V + + + +S G KE L ++W +L++K+ C+ +V++ Q T ++D+ +P STS + + + S+ +S EL++ SV +++ R++YD+LV FTV LT +RD+L++ L+ Sbjct: 49 IAFKVKTTRPLRYLVRPNQGMLLPDGSASIVVSLQQKDCEELFRLDPSERQTLNDKFLVQSIYIENSFYESVRTRGS-KETADVLTQMWLHTDKSKLSNKKLRCRFVQDSIENNGSKVQLETQPTATYLSTGSRDVSISPRSGLSTSHMQSSFRESNTETSERREFKDNELNTKSSV-------QEVASLRKKYDELVAFTVQLTAQRDVLLSDLE 256 The following BLAST results are available for this feature:
BLAST of NO01G03270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 18
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following gene feature(s) are orthologous to this gene:
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G03270 ID=NO01G03270|Name=NO01G03270|organism=Nannochloropsis oceanica|type=gene|length=2323bpback to top protein sequence of NO01G03270.1 >NO01G03270.1-protein ID=NO01G03270.1-protein|Name=NO01G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bpback to top protein sequence of NO01G03270.2 >NO01G03270.2-protein ID=NO01G03270.2-protein|Name=NO01G03270.2|organism=Nannochloropsis oceanica|type=polypeptide|length=273bpback to top protein sequence of NO01G03270.3 >NO01G03270.3-protein ID=NO01G03270.3-protein|Name=NO01G03270.3|organism=Nannochloropsis oceanica|type=polypeptide|length=383bpback to top Synonyms
Publications
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