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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:858215..860537 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03270.2 vs.
Match: EJK46875.1 (hypothetical protein THAOC_34435 [Thalassiosira oceanica]) HSP 1 Score: 87.4 bits (215), Expect = 7.300e-14 Identity = 70/240 (29.17%), Postives = 117/240 (48.75%), Query Frame = 0
Query: 32 GMAKTLVTVSNPTSDPGLGG-VAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSPEKQAEARQEH---GQVVMDKFQVVYLPLNKAVCDSF------EKSGD----VKEQVGQLERLWQLADKRAVCKLTFEVEIALQEET-STQDLRNTPSTSWAEKNGKPSSAPSSVGE-LHSPGSVMHFSLTSKQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRELSSHADVGKLG 256
G ++ ++T+++P D GG +AFK+KTT+P+RYLVRPNQ I+ G V+IL+ + + + R + GQ +D + +L + AV D F E G+ KE V L +W A F ++ ++ + TP+ S + + P++ + M +++ R++YD+LV F+V LT ERD+L N L+ K L RE ++ + K G
Sbjct: 29 GASRCIMTLTHPRKDGKGGGYLAFKVKTTQPRRYLVRPNQGIVAPGSSETVSILLVDKDRQQLRATYNRLGQSALDHSKDKFLVQSCAVPDDFAAQFKNESRGEGGQYKKELVDALTSMWNKATSGGSEISVFNKKLHVKHSVGGSAGSGGTPAASASSPSSSGGGLPATFDSGKRNNADKMSPDQLQDEVSSLRRKYDELVAFSVNLTAERDILNNTLEQTKRDLNRESATRTALEKQG 268
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03270.2 ID=NO01G03270.2|Name=NO01G03270.2|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp GCTGCTCCTTCAGCTGCGCCTGGAGGATCAGTATTTCTGCCTGCAAGCGA TCCTTGTCGATTTGGAGCGCCCTGACCTCCGCAGCTTTGCATTCTGAAAA TTATTTGTGAGGGCAGATAGGATATTTATCACATAGATTGTCGGAAGCTC TCCTGAAAGGTACTTTGAGCACTATTTTAAAAGCGGCACGGGTGTGGAGA AGTACCTATCTGGACTTTGGGGTCAGGTCCGGCAGGAGAGTCAGCATGTG TCGTAGTGGGCGCTGTTTTTGATAATGCCGTCTTCTTCTTGACGACAAGT TTTTTCATGGTGGCAGGCATTGTTTTGTCTGTGGTTGTGGAAAGAGGGAG AATTTGTTGTGAAATTTAGGGAGGGCGGAAGGCGGGGAAGAAGTTGAAGA GAGAAACGTACTCTCCGAGTGAGTCACGAGACAAGATCTCAGAGCAACAG CACGCCCAGAAGTCGATGCGAGCCGCACACCACTTATACATGCATGACAT ATGCCGCCAAAACACAACTTACACGCCACAGGCTATACGCCACGGGACTT GGTAGGGTAGAGCATTTATCCATCCTGCGGGGCCCATCCGAGAGCAACGT AAAAAAGCATGGCAAGTGGCAGTGCCATCGCCCCTTCCCTCCTGCAGCCG CCCCCCCATCTGTCAATTTCTCCGTGTGGCAAGACAGTTGTGGGCGAAGC AGGTATGGCCAAGACTCTCGTGACCGTGAGTAATCCCACGTCGGACCCGG GACTCGGAGGTGTGGCTTTCAAAATCAAGACCACAAAGCCAAAGCGATAC CTTGTGCGTCCCAATCAAAGCATCCTTATGGCAGGGGAGCGAAGAGAAGT GGCCATCCTCATGTCTCCCGAGAAACAGGCGGAAGCACGACAGGAGCACG GGCAAGTCGTAATGGACAAGTTCCAAGTGGTGTACTTGCCTCTGAACAAA GCGGTCTGTGATAGCTTTGAAAAATCAGGAGATGTCAAGGAGCAGGTAGG GCAGCTAGAGCGGCTTTGGCAGCTAGCCGACAAGCGAGCTGTATGTAAGC TGACGTTTGAAGTGGAAATAGCCTTACAAGAGGAAACCTCTACCCAAGAT TTGCGGAATACCCCCTCCACCTCTTGGGCAGAAAAAAATGGCAAGCCCTC GTCCGCTCCGTCCTCGGTGGGCGAGCTGCACAGCCCTGGGTCCGTCATGC ATTTTTCCTTAACGTCCAAGCAGATGACAGAATATCGGCAGCGATACGAC GATCTGGTGACGTTCACGGTGGCACTTACCAATGAAAGGGACCTGCTCAT CAACGCCCTGGACTCCGTCAAACTGCAGCTACGGCGAGAGTTGTCAAGCC ATGCCGACGTGGGAAAATTGGGACCAGAGGATGCGGTAAACTATGAGCTT CTCAACCTTCACAAGCGACGCCGGTAAGAGAAAAATACCAATCTTGCGTC GGTTGATTCGTGGACGTGAACAACTGCGATCAATGCTTAACTTTATTGTG CCATATTTCAATTCTAAACCCCACATACCAATCTTCTTCTACGAAGCTCC AGGGCCTCGTCCTTCTCACCCGTCTCAATCATCCCCGGAATCGCCTCCCA CGCCCACAAGAGTCCCTCTGCACTCGATGCTCGCCATGAGAAATGCAACC TCTACTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTATGGCT GAAAGGGGCAAAGTGTCAAGAAAAATGCTGCTAGTCCTGTTGCTTGTGGC GATATTCTTGGGACACAAAGTGAGGGAAAATTTTGGGTTGTGGTGGTGGT TCTTCTAAGTAGACGGGAAAAATGAATGAGCGAGTGAGCAATCGAGAGAG AACGAAAGAGAGACCGAGATAGAGGAAGGAAGAAGAGATGATTTTGAGTA CGTACGCAGAGAAAGACCGCGAAGAATGTAAAATC back to topprotein sequence of NO01G03270.2 >NO01G03270.2-protein ID=NO01G03270.2-protein|Name=NO01G03270.2|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp MASGSAIAPSLLQPPPHLSISPCGKTVVGEAGMAKTLVTVSNPTSDPGLG GVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSPEKQAEARQEHGQV VMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLWQLADKRAVCKLTF EVEIALQEETSTQDLRNTPSTSWAEKNGKPSSAPSSVGELHSPGSVMHFS LTSKQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRELSSHAD VGKLGPEDAVNYELLNLHKRRR* back to topmRNA from alignment at chr1:858215..860537+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03270.2 ID=NO01G03270.2|Name=NO01G03270.2|organism=Nannochloropsis oceanica|type=mRNA|length=2323bp|location=Sequence derived from alignment at chr1:858215..860537+ (Nannochloropsis oceanica) GCTGCTCCTTCAGCTGCGCCTGGAGGATCAGTATTTCTGCCTGCAAGCGA
TCCTTGTCGATTTGGAGCGCCCTGACCTCCGCAGCTTTGCATTCTGAAAA
TTATTTGTGAGGGCAGATAGGATATTTATCACATAGATTGTCGGAAGCTC
TCCTGAAAGGTACTTTGAGCACTATTTTAAAAGCGGCACGGGTGTGGAGA
AGTACCTATCTGGACTTTGGGGTCAGGTCCGGCAGGAGAGTCAGCATGTG
TCGTAGTGGGCGCTGTTTTTGATAATGCCGTCTTCTTCTTGACGACAAGT
TTTTTCATGGTGGCAGGCATTGTTTTGTCTGTGGTTGTGGAAAGAGGGAG
AATTTGTTGTGAAATTTAGGGAGGGCGGAAGGCGGGGAAGAAGTTGAAGA
GAGAAACGTACTCTCCGAGTGAGTCACGAGACAAGATCTCAGAGCAACAG
CACGCCCAGAAGTCGATGCGAGCCGCACACCACTTATACATGCATGACAT
ATGCCGCCAAAACACAACTTACACGCCACAGGCTATACGCCACGGGACTT
GGTAGGGTAGAGCATTTATCCATCCTGCGGGGCCCATCCGAGAGCAACGT
AAAAAAGCATGGCAAGTGGCAGTGCCATCGCCCCTTCCCTCCTGCAGCCG
CCCCCCCATGTAAGCACTGTTCGTGAGCAAGATGTGCACCATCGCCCATT
CCTCACCCGCACATATTCACACAACTACAAGCTGTCAATTTCTCCGTGTG
GCAAGACAGTTGTGGGCGAAGCAGGTATGGCCAAGACTCTCGTGACCGTG
AGTAATCCCACGTCGGACCCGGGACTCGGAGGTGTGGCTTTCAAAATCAA
GACCACAAAGCCAAAGCGATACCTTGTGCGTCCCAATCAAAGCATCCTTA
TGGCAGGGGAGCGAAGAGAAGTGGCCATCCTCATGTCTCCCGAGAAACAG
GCGGAAGCACGACAGGAGCACGGGCAAGTCGTAATGGACAAGTTCCAAGT
GGTGTACTTGCCTCTGAACAAAGCGGTCTGTGATAGCTTTGAAAAATCAG
GAGATGTCAAGGAGCAGGTACGGAGTATATGAAATGACTTACTTTTCGGG
TCTATTTGGCTTCATCTGATGACCTTCACTAACGTCCGTCCCGTTTTTTA
CGAATGTTCCCTTACCGCCCTTCTGTCGACTTCTTTTAAACGTAGGTAGG
GCAGCTAGAGCGGCTTTGGCAGCTAGCCGACAAGCGAGCTGTATGTAAGC
TGACGTTTGAAGTGGAAATAGCCTTACAAGAGGAAACCTCTACCCAAGAT
TTGCGGAATACCCCCTCCACCTCTTGGGCAGAAAAAAATGGCAAGCCCTC
GTCCGCTCCGTCCTCGGTGGGCGAGCTGCACAGCCCTGGGTCCGTCATGC
ATTTTTCCTTAACGTCCAAGCAGGTAGGCTATGTTTAAATTTGTAAGTCA
AAGGGAAAATCCATTAACTCATATCTTTCTCTATTGATTTTTTACTCCCT
TGCAGATGACAGAATATCGGCAGCGATACGACGATCTGGTGACGTTCACG
GTCAGTGAATCCTCCCTTTGTCCCCTTTCTCATTTTTGCTGTCTATACTG
CCGCTTTTCATTTTTGTTGCACGCCAATAACAACCCATTCTCCACTTCTA
CTCCAGGTGGCACTTACCAATGAAAGGGACCTGCTCATCAACGCCCTGGA
CTCCGTCAAACTGCAGCTACGGCGAGAGTTGTCAAGCCATGCCGACGTGG
GAAAATTGGGACCAGAGGATGCGGTAAACTATGAGCTTCTCAACCTTCAC
AAGCGACGCCGGTAAGAGAAAAATACCAATCTTGCGTCGGTTGATTCGTG
GACGTGAACAACTGCGATCAATGCTTAACTTTATTGTGCCATATTTCAAT
TCTAAACCCCACATACCAATCTTCTTCTACGAAGCTCCAGGGCCTCGTCC
TTCTCACCCGTCTCAATCATCCCCGGAATCGCCTCCCACGCCCACAAGAG
TCCCTCTGCACTCGATGCTCGCCATGAGAAATGCAACCTCTACTGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTATGGCTGAAAGGGGCAAA
GTGTCAAGAAAAATGCTGCTAGTCCTGTTGCTTGTGGCGATATTCTTGGG
ACACAAAGTGAGGGAAAATTTTGGGTTGTGGTGGTGGTTCTTCTAAGTAG
ACGGGAAAAATGAATGAGCGAGTGAGCAATCGAGAGAGAACGAAAGAGAG
ACCGAGATAGAGGAAGGAAGAAGAGATGATTTTGAGTACGTACGCAGAGA
AAGACCGCGAAGAATGTAAAATC back to topCoding sequence (CDS) from alignment at chr1:858215..860537+ >NO01G03270.2 ID=NO01G03270.2|Name=NO01G03270.2|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at chr1:858215..860537+ (Nannochloropsis oceanica) ATGGCAAGTGGCAGTGCCATCGCCCCTTCCCTCCTGCAGCCGCCCCCCCA TCTGTCAATTTCTCCGTGTGGCAAGACAGTTGTGGGCGAAGCAGGTATGG CCAAGACTCTCGTGACCGTGAGTAATCCCACGTCGGACCCGGGACTCGGA GGTGTGGCTTTCAAAATCAAGACCACAAAGCCAAAGCGATACCTTGTGCG TCCCAATCAAAGCATCCTTATGGCAGGGGAGCGAAGAGAAGTGGCCATCC TCATGTCTCCCGAGAAACAGGCGGAAGCACGACAGGAGCACGGGCAAGTC GTAATGGACAAGTTCCAAGTGGTGTACTTGCCTCTGAACAAAGCGGTCTG TGATAGCTTTGAAAAATCAGGAGATGTCAAGGAGCAGGTAGGGCAGCTAG AGCGGCTTTGGCAGCTAGCCGACAAGCGAGCTGTATGTAAGCTGACGTTT GAAGTGGAAATAGCCTTACAAGAGGAAACCTCTACCCAAGATTTGCGGAA TACCCCCTCCACCTCTTGGGCAGAAAAAAATGGCAAGCCCTCGTCCGCTC CGTCCTCGGTGGGCGAGCTGCACAGCCCTGGGTCCGTCATGCATTTTTCC TTAACGTCCAAGCAGATGACAGAATATCGGCAGCGATACGACGATCTGGT GACGTTCACGGTGGCACTTACCAATGAAAGGGACCTGCTCATCAACGCCC TGGACTCCGTCAAACTGCAGCTACGGCGAGAGTTGTCAAGCCATGCCGAC GTGGGAAAATTGGGACCAGAGGATGCGGTAAACTATGAGCTTCTCAACCT TCACAAGCGACGCCGGTAA back to top
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