NO01G03270, NO01G03270 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G03270 vs. NCBI_GenBank
Match: XP_009836805.1 (hypothetical protein H257_11527 [Aphanomyces astaci] >ETV73868.1 hypothetical protein H257_11527 [Aphanomyces astaci]) HSP 1 Score: 86.3 bits (212), Expect = 1.600e-13 Identity = 77/262 (29.39%), Postives = 117/262 (44.66%), Query Frame = 0 Query: 12 LQPPPHLSISPCGKTVVGEAGMAKTLVTVSNPTSDPGLGGVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSP---EKQAEARQEHGQVVMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLW------QLADKRAVCKLT-------FEVEIALQEETSTQDLRNTPSTSWAEKNGKPSSAPSSVGELHSPGSVMHFSLTS-----------------KQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQ 241 L+P LS S + + +T+SNP+S + VAFK+KTT+P RYLVRPNQ ++ V +++ ++ Q Q+ DKF V + + CD K KE L LW Q+++K+ C+ T +++ ++ S L N+P+ A N P+S G S G +F+ S +M R++YD+LV FTV LT +RD LIN LD + Q Sbjct: 12 LEPADSLSFS------LSTNSTPQAALTISNPSS---VENVAFKVKTTRPMRYLVRPNQGVIGPNSSATVLVILQQKDCDELLRLDQAERQLSNDKFLVQSVGVEAEFCDLLTKKSS-KEVNDDLTSLWNQAEKAQISNKKLRCRFTEGTIGGGSSNDLSTPQQLSNALLDNSPTDGAASSNTSSVHPPTSYGSSSSNGR-SNFATASYASGPTDDAAARTLELASEMAVLRKKYDELVAFTVQLTAQRDTLINDLDKFRQQ 262
BLAST of NO01G03270 vs. NCBI_GenBank
Match: XP_009836804.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV73869.1 hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 86.3 bits (212), Expect = 1.600e-13 Identity = 77/262 (29.39%), Postives = 117/262 (44.66%), Query Frame = 0 Query: 12 LQPPPHLSISPCGKTVVGEAGMAKTLVTVSNPTSDPGLGGVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSP---EKQAEARQEHGQVVMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLW------QLADKRAVCKLT-------FEVEIALQEETSTQDLRNTPSTSWAEKNGKPSSAPSSVGELHSPGSVMHFSLTS-----------------KQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQ 241 L+P LS S + + +T+SNP+S + VAFK+KTT+P RYLVRPNQ ++ V +++ ++ Q Q+ DKF V + + CD K KE L LW Q+++K+ C+ T +++ ++ S L N+P+ A N P+S G S G +F+ S +M R++YD+LV FTV LT +RD LIN LD + Q Sbjct: 12 LEPADSLSFS------LSTNSTPQAALTISNPSS---VENVAFKVKTTRPMRYLVRPNQGVIGPNSSATVLVILQQKDCDELLRLDQAERQLSNDKFLVQSVGVEAEFCDLLTKKSS-KEVNDDLTSLWNQAEKAQISNKKLRCRFTEGTIGGGSSNDLSTPQQLSNALLDNSPTDGAASSNTSSVHPPTSYGSSSSNGR-SNFATASYASGPTDDAAARTLELASEMAVLRKKYDELVAFTVQLTAQRDTLINDLDKFRQQ 262
BLAST of NO01G03270 vs. NCBI_GenBank
Match: XP_012205006.1 (hypothetical protein SPRG_09866 [Saprolegnia parasitica CBS 223.65] >KDO24230.1 hypothetical protein SPRG_09866 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 82.8 bits (203), Expect = 1.800e-12 Identity = 79/273 (28.94%), Postives = 120/273 (43.96%), Query Frame = 0 Query: 1 MASGSAIAPSLLQPPPHLSISPCGKTVVGEAGMAKTLVTVSNPTSDPGLGGVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSPEKQAEARQ---EHGQVVMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLWQLADKRAVCKLTFEVEIALQEETSTQDLRNTPSTSWAEKNGKPSSAPSSVGELHSP-GSVMHFSLTSKQMTE---YRQRYDDLVTFTVALTNERDLLINALDSVKLQ----------LRRELSSHADVGKLGP 257 M S SA L P L+ + +G + A + +SNP+S + VAFK+KTT+P RYLVRPNQ ++ V +++ + E + Q+ DKF V + ++ CD K KE + L LW A+K+ + E S+ D+ + A P +AP + S S S+ + M E R++YD+LV FTV LT +RD L+ LD + Q L+R+ S D+ P Sbjct: 17 MDSSSAAHSITLDPTDSLAFA----LALGSSPQA--ALVISNPSS---VENVAFKVKTTRPMRYLVRPNQGVIGPNSSATVLVILQQKDCDELLRLDASERQLSNDKFLVQSVGVDAEFCDLLTKK-SAKEVMDDLTTLWANAEKKTISNKKLRCRFV---EGSSMDVSTPSQLTSALLETPPEAAPKPLSTQQSMYASTAEDSIRQEMMAEMAVLRKKYDELVAFTVQLTAQRDTLMGDLDKSRQQNQKLTTEQQRLKRQTSDMVDLAPARP 276
BLAST of NO01G03270 vs. NCBI_GenBank
Match: OEU22254.1 (hypothetical protein FRACYDRAFT_166304 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 80.5 bits (197), Expect = 9.000e-12 Identity = 62/204 (30.39%), Postives = 102/204 (50.00%), Query Frame = 0 Query: 52 VAFKIKTTKPKRYLVRPNQSILMAGERREVAILM-SPEKQA--EARQEHGQVVMDKFQVVYLPLNKAVCDSF--EKSGDVKEQVGQLERLWQLADKRAVCKLTFEVEIALQEETSTQ-DLRNTPSTSWAEKNGKPSSAPSSVGELHSPGSVMHFSLTSKQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRELSSHA 250 +AFK+KTT+P+RYLVRPNQ ++ G ++IL+ +KQA ++ + GQ +D + +L + V +F +K G + L +W ++ ++ ST L T +TS G AP HS M S +++ R++YD+LV+F+V LT ERD+L N L+ K RE+++ + Sbjct: 13 IAFKVKTTQPRRYLVRPNQGLIAPGTSETISILLVEKDKQALLQSYERLGQSGLDHSKDKFLVQSCTVDKTFAAKKLGSQTDLYDALTTMWNSVTSGGSSAALQNKKLHVRHIVSTSPSLAGTSNTS-----GSKGVAPRLETTQHSNMVEMSADQISSELSNLRRKYDELVSFSVNLTAERDILSNTLEQTKRDYNREMAARS 211
BLAST of NO01G03270 vs. NCBI_GenBank
Match: XP_008871057.1 (hypothetical protein H310_07468 [Aphanomyces invadans] >ETW00032.1 hypothetical protein H310_07468 [Aphanomyces invadans]) HSP 1 Score: 80.1 bits (196), Expect = 1.200e-11 Identity = 73/240 (30.42%), Postives = 114/240 (47.50%), Query Frame = 0 Query: 38 VTVSNPTSDPGLGGVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSPEKQAEARQ---EHGQVVMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLW------QLADKRAVCKL-------TFEVEIALQEETSTQDLRN-----TPSTSWAEK--NGKPSSAPSSV--GELHSPGSV---MHFSLTSKQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRELSSHA 250 +T+SNP++ + +AFK+KTT+P RYLVRPNQ ++ V +++ + E + Q+ DKF V + + CD K KE + L LW Q+++K+ C+ + + E T+ Q L N +P+ S A + S APSS G S S+ + +M R++YD+LV FTV LT +RD LIN LD + Q ++ + A Sbjct: 32 LTISNPSN---VENIAFKVKTTRPMRYLVRPNQGVIGPNSSATVLVILQQKDCDELLRLDPTERQLSNDKFLVQSVGVEAEFCDLLTKK-QAKEVMDDLTSLWNHAEKTQISNKKLRCRFMEGTVASSSSSNVGTSELTTPQQLSNALLDKSPTDSAASNYVSASTSHAPSSSTNGRTASATSLDESERILELASEMAVLRKKYDELVAFTVQLTAQRDTLINDLDKFRQQNQKLTAEQA 267
BLAST of NO01G03270 vs. NCBI_GenBank
Match: GAX22677.1 (vesicle-associated membrane protein-associated protein A [Fistulifera solaris]) HSP 1 Score: 79.0 bits (193), Expect = 2.600e-11 Identity = 63/212 (29.72%), Postives = 100/212 (47.17%), Query Frame = 0 Query: 46 DPGLGGVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSPEKQAEARQEH---GQVVMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLWQLADKRAVCKLTFEVEIALQEETSTQDLRNTP-----STSWAEKNGKPSSAPSSVGELHSPGSVMHFSLTSKQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRELSSHA 250 D +AFK+KTT+P+RYLVRPNQ ++ G + V IL+ +++ Q + GQ +D+ + +L + A+ D+ K +K+ +L LW + TST + N + +K+G A + P + ++T R++YD+LV F+V LT ERD+L N L+ K L RELS A Sbjct: 42 DASSAPIAFKVKTTQPRRYLVRPNQGLIEPGGAQTVQILLVEKEKNSLLQSYERLGQPTLDQSKDKFLVQSVAILDA-SKLASLKD-YDELTSLW--------------ATVGNSPSTSTSAVANKKLHVKHVVAGNKKSGSGDGAHGNSSISREPIENLTQDQAKAELTNMRRKYDELVAFSVNLTAERDMLNNTLEQTKRDLNRELSKTA 237
BLAST of NO01G03270 vs. NCBI_GenBank
Match: EJK46875.1 (hypothetical protein THAOC_34435 [Thalassiosira oceanica]) HSP 1 Score: 77.8 bits (190), Expect = 5.800e-11 Identity = 68/241 (28.22%), Postives = 114/241 (47.30%), Query Frame = 0 Query: 32 GMAKTLVTVSNPTSD-PGLGGVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSPEKQAEARQEH---GQVVMDKFQVVYLPLNKAVCDSF------EKSGD----VKEQVGQLERLWQLADKRAVCKLTFEVEIALQEE---TSTQDLRNTPSTSWAEKNGKPSSAPSSVGELHSPGSVMHFSLTSKQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRELSSHADVGKLG 256 G ++ ++T+++P D G G +AFK+KTT+P+RYLVRPNQ I+ G V+IL+ + + + R + GQ +D + +L + AV D F E G+ KE V L +W A F ++ ++ ++ A G+ ++ + L +++ R++YD+LV F+V LT ERD+L N L+ K L RE ++ + K G Sbjct: 29 GASRCIMTLTHPRKDGKGGGYLAFKVKTTQPRRYLVRPNQGIVAPGSSETVSILLVDKDRQQLRATYNRLGQSALDHSKDKFLVQSCAVPDDFAAQFKNESRGEGGQYKKELVDALTSMWNKATSGGSEISVFNKKLHVKHSVGGSAXXXXXXXXXXXXXXXXXXXLPATFDSGKRNNADKMSPDQL-QDEVSSLRRKYDELVAFSVNLTAERDILNNTLEQTKRDLNRESATRTALEKQG 268
BLAST of NO01G03270 vs. NCBI_GenBank
Match: GAX19204.1 (vesicle-associated membrane protein-associated protein A [Fistulifera solaris]) HSP 1 Score: 77.4 bits (189), Expect = 7.600e-11 Identity = 62/212 (29.25%), Postives = 99/212 (46.70%), Query Frame = 0 Query: 46 DPGLGGVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSPEKQAEARQEH---GQVVMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLWQLADKRAVCKLTFEVEIALQEETSTQDLRNTP-----STSWAEKNGKPSSAPSSVGELHSPGSVMHFSLTSKQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRELSSHA 250 D +AFK+KTT+P+RYLVRPNQ ++ G + V IL+ +++ Q + GQ +D+ + +L + A+ D+ K +K+ +L LW + TST + N + + K+G + P + ++T R++YD+LV F+V LT ERD+L N L+ K L RELS A Sbjct: 37 DASSAPIAFKVKTTQPRRYLVRPNQGLIEPGGAQTVQILLVEKEKNSLLQSYERLGQPTLDQSKDKFLVQSVAILDA-SKLASLKD-YDELTSLW--------------ATVGSTPSTSTSAVANKKLHVKHVVAGSSKSGTSDGDRGNSSISREPIENLTQDQAKAELTNMRRKYDELVAFSVNLTAERDMLNNTLEQTKRDLNRELSKTA 232
BLAST of NO01G03270 vs. NCBI_GenBank
Match: XP_008618455.1 (hypothetical protein SDRG_14126 [Saprolegnia diclina VS20] >EQC28030.1 hypothetical protein SDRG_14126 [Saprolegnia diclina VS20]) HSP 1 Score: 77.0 bits (188), Expect = 9.900e-11 Identity = 69/247 (27.94%), Postives = 107/247 (43.32%), Query Frame = 0 Query: 1 MASGSAIAPSLLQPPPHLSISPCGKTVVGEAGMAKTLVTVSNPTSDPGLGGVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSP---EKQAEARQEHGQVVMDKFQVVYLPLNKAVCDSFEKSGDVKEQVGQLERLWQLADKRAVCKLTFEVEIALQEETSTQDLRNTPSTSWAEKNGKPSSAPSSVGELHSP-GSVMHFSLTSKQMTE---YRQRYDDLVTFTVALTNERDLLINALDSVKLQ 241 M S SA L P LS + + + + +SNP+S + VAFK++T +P R++VRPNQ ++ V +++ ++ + Q+ DKF V + ++ CD K KE + L LW A+K + L T L +P P +AP S+ S S S+ + M E R++YD+LV FTV LT +RD L+ LD + Q Sbjct: 5 MDSSSAAHSITLDPTDSLSFA------LALGSSPQVALVISNPSS---VENVAFKLRTKRPTRFIVRPNQGVIGPNSSATVLVILQQKDCDELLRVDESERQLSNDKFLVQSVGVDAEFCDLLTKK-SAKEVMDDLTTLWANAEKETISNKKLWCRFELAPGALTSALLESP----------PEAAPKSLSTQQSVYASTAEDSIRQEMMAEMAVLRKKYDELVAFTVQLTAQRDTLMGDLDKSRQQ 231
BLAST of NO01G03270 vs. NCBI_GenBank
Match: CBN77198.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 71.6 bits (174), Expect = 4.200e-9 Identity = 67/210 (31.90%), Postives = 93/210 (44.29%), Query Frame = 0 Query: 48 GLGGVAFKIKTTKPKRYLVRPNQSILMAGERREVAILMSPEKQ----AEARQEHGQVVMDKFQVVYLPL-NKAVCDSFEKSGDVKEQVGQLERLWQLADKRAVCKLTF--------EVEIALQEETSTQDLRNTPSTSWAEKNGKPSSAPSSVGELHSPGSVMHFSLTSKQMTEYRQRYDDLVTFTVALTNERDLLINALDSVKLQLRRE 245 G VAFK+KTTKPKRYLVRPNQ ++ E V+I++ + +E Q G +KF V LPL ++ G KE ++++ K+ V TF E Q +D S+ G G GS M Q E R++YDDLV+FT+ LT E+DL+ +L + K L RE Sbjct: 39 GSESVAFKVKTTKPKRYLVRPNQGVVAPSEDLPVSIVLLAHDKVGLISEFMQTGGCNETNKFMVQALPLQGESATAGAVPPGLWKEAKARVQQ------KKLVVHFTFPRPSIPPSSAETLKQASNGVRDAIAGDSSRSRFATGTEDGLQGGAG---GDGSDMSQDQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLARE 239 The following BLAST results are available for this feature:
BLAST of NO01G03270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 18
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following gene feature(s) are orthologous to this gene:
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G03270 ID=NO01G03270|Name=NO01G03270|organism=Nannochloropsis oceanica|type=gene|length=2323bpback to top protein sequence of NO01G03270.1 >NO01G03270.1-protein ID=NO01G03270.1-protein|Name=NO01G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bpback to top protein sequence of NO01G03270.2 >NO01G03270.2-protein ID=NO01G03270.2-protein|Name=NO01G03270.2|organism=Nannochloropsis oceanica|type=polypeptide|length=273bpback to top protein sequence of NO01G03270.3 >NO01G03270.3-protein ID=NO01G03270.3-protein|Name=NO01G03270.3|organism=Nannochloropsis oceanica|type=polypeptide|length=383bpback to top Synonyms
Publications
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