NO01G03230, NO01G03230 (gene) Nannochloropsis oceanica

Overview
NameNO01G03230
Unique NameNO01G03230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length383
Alignment locationchr1:845680..846062 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:845680..846062 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G03230 vs. NCBI_GenBank
Match: EWM29294.1 (hypothetical protein Naga_100029g4 [Nannochloropsis gaditana])

HSP 1 Score: 132.9 bits (333), Expect = 5.300e-28
Identity = 66/94 (70.21%), Postives = 78/94 (82.98%), Query Frame = 0 
Query:    1 MTLISKTFLLAGVTMIMRASHQAMQQVKPSMPAVLLDLLVAFLLCLTGALLGAGSFRPTHLSQDPSHRCKDIFDSRPDFAVFNHRGPLLRSRQL 95
            MTL+SK+ LL G+ +++RAS +AMQQ  PS+PAV+LDLL AF + L GALLGAG FRP HL+QD S RCKDI  SRPDFAVF+HRGPLLRSRQL
Sbjct:    1 MTLLSKSLLLVGLALVVRASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQL 94
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BLAST of NO01G03230 vs. NCBI_GenBank
Match: XP_005852572.1 (hypothetical protein NGA_0369602 [Nannochloropsis gaditana CCMP526] >EKU23257.1 hypothetical protein NGA_0369602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 129.4 bits (324), Expect = 5.900e-27
Identity = 64/93 (68.82%), Postives = 76/93 (81.72%), Query Frame = 0 
Query:    1 MTLISKTFLLAGVTMIMRASHQAMQQVKPSMPAVLLDLLVAFLLCLTGALLGAGSFRPTHLSQDPSHRCKDIFDSRPDFAVFNHRGPLLRSRQ 94
            MTL+SK+ L+ G+ ++ RAS +AMQQ  PS+PAV+LDLL AF + L GALLGAG FRP HL+QD S RCKDI  SRPDFAVF+HRGPLLRSRQ
Sbjct:    1 MTLLSKSLLVVGLALVARASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQ 93
The following BLAST results are available for this feature:
BLAST of NO01G03230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29294.15.300e-2870.21hypothetical protein Naga_100029g4 [Nannochloropsi... [more]
XP_005852572.15.900e-2768.82hypothetical protein NGA_0369602 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007999NSK007999Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03230.1NO01G03230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100029g4gene1372Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03230.1NO01G03230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03230 ID=NO01G03230|Name=NO01G03230|organism=Nannochloropsis oceanica|type=gene|length=383bp
ATGACGCTCATTTCCAAAACCTTCTTGCTGGCGGGTGTGACCATGATCAT
GCGGGCTTCCCACCAGGCCATGCAGCAAGgtaaacgtactgcctcccctc
cttcctctctccctcggcccctccatcatctgcaaactgccaacaccact
attcacacaccccacgccacgtgacagTCAAACCCTCAATGCCGGCCGTT
CTATTGGACCTGCTCGTGGCATTTCTGCTGTGCTTGACAGGGGCGCTGCT
GGGGGCGGGCTCCTTCAGACCAACCCACCTGTCCCAAGACCCTTCCCATC
GCTGCAAAGACATCTTTGACTCCCGGCCGGACTTTGCCGTCTTCAACCAT
CGCGGTCCCTTATTGCGAAGTCGGCAATTGTGA
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protein sequence of NO01G03230.1

>NO01G03230.1-protein ID=NO01G03230.1-protein|Name=NO01G03230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MTLISKTFLLAGVTMIMRASHQAMQQVKPSMPAVLLDLLVAFLLCLTGAL
LGAGSFRPTHLSQDPSHRCKDIFDSRPDFAVFNHRGPLLRSRQL*
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Synonyms
Publications