NO01G03230.1, NO01G03230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03230.1
Unique NameNO01G03230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length285
Alignment locationchr1:845680..846062 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:845680..846062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G03230.1 vs.
Match: EWM29294.1 (hypothetical protein Naga_100029g4 [Nannochloropsis gaditana])

HSP 1 Score: 132.9 bits (333), Expect = 5.300e-28
Identity = 66/94 (70.21%), Postives = 78/94 (82.98%), Query Frame = 0 
Query:    1 MTLISKTFLLAGVTMIMRASHQAMQQVKPSMPAVLLDLLVAFLLCLTGALLGAGSFRPTHLSQDPSHRCKDIFDSRPDFAVFNHRGPLLRSRQL 95
            MTL+SK+ LL G+ +++RAS +AMQQ  PS+PAV+LDLL AF + L GALLGAG FRP HL+QD S RCKDI  SRPDFAVF+HRGPLLRSRQL
Sbjct:    1 MTLLSKSLLLVGLALVVRASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQL 94
The following BLAST results are available for this feature:
BLAST of NO01G03230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29294.15.300e-2870.21hypothetical protein Naga_100029g4 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03230NO01G03230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03230.1NO01G03230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03230.1.cds1NO01G03230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03230.1.cds2NO01G03230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03230.1 ID=NO01G03230.1|Name=NO01G03230.1|organism=Nannochloropsis oceanica|type=mRNA|length=285bp
ATGACGCTCATTTCCAAAACCTTCTTGCTGGCGGGTGTGACCATGATCAT
GCGGGCTTCCCACCAGGCCATGCAGCAAGTCAAACCCTCAATGCCGGCCG
TTCTATTGGACCTGCTCGTGGCATTTCTGCTGTGCTTGACAGGGGCGCTG
CTGGGGGCGGGCTCCTTCAGACCAACCCACCTGTCCCAAGACCCTTCCCA
TCGCTGCAAAGACATCTTTGACTCCCGGCCGGACTTTGCCGTCTTCAACC
ATCGCGGTCCCTTATTGCGAAGTCGGCAATTGTGA
back to top

protein sequence of NO01G03230.1

>NO01G03230.1-protein ID=NO01G03230.1-protein|Name=NO01G03230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MTLISKTFLLAGVTMIMRASHQAMQQVKPSMPAVLLDLLVAFLLCLTGAL
LGAGSFRPTHLSQDPSHRCKDIFDSRPDFAVFNHRGPLLRSRQL*
back to top

mRNA from alignment at chr1:845680..846062-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03230.1 ID=NO01G03230.1|Name=NO01G03230.1|organism=Nannochloropsis oceanica|type=mRNA|length=383bp|location=Sequence derived from alignment at chr1:845680..846062- (Nannochloropsis oceanica)
ATGACGCTCATTTCCAAAACCTTCTTGCTGGCGGGTGTGACCATGATCAT
GCGGGCTTCCCACCAGGCCATGCAGCAAGGTAAACGTACTGCCTCCCCTC
CTTCCTCTCTCCCTCGGCCCCTCCATCATCTGCAAACTGCCAACACCACT
ATTCACACACCCCACGCCACGTGACAGTCAAACCCTCAATGCCGGCCGTT
CTATTGGACCTGCTCGTGGCATTTCTGCTGTGCTTGACAGGGGCGCTGCT
GGGGGCGGGCTCCTTCAGACCAACCCACCTGTCCCAAGACCCTTCCCATC
GCTGCAAAGACATCTTTGACTCCCGGCCGGACTTTGCCGTCTTCAACCAT
CGCGGTCCCTTATTGCGAAGTCGGCAATTGTGA
back to top

Coding sequence (CDS) from alignment at chr1:845680..846062-

>NO01G03230.1 ID=NO01G03230.1|Name=NO01G03230.1|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at chr1:845680..846062- (Nannochloropsis oceanica)
ATGACGCTCATTTCCAAAACCTTCTTGCTGGCGGGTGTGACCATGATCAT
GCGGGCTTCCCACCAGGCCATGCAGCAAGTCAAACCCTCAATGCCGGCCG
TTCTATTGGACCTGCTCGTGGCATTTCTGCTGTGCTTGACAGGGGCGCTG
CTGGGGGCGGGCTCCTTCAGACCAACCCACCTGTCCCAAGACCCTTCCCA
TCGCTGCAAAGACATCTTTGACTCCCGGCCGGACTTTGCCGTCTTCAACC
ATCGCGGTCCCTTATTGCGAAGTCGGCAATTGTGA
back to top
Synonyms
Publications