NO01G02810, NO01G02810 (gene) Nannochloropsis oceanica

Overview
NameNO01G02810
Unique NameNO01G02810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length630
Alignment locationchr1:727929..728558 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:727929..728558 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
Homology
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BLAST of NO01G02810 vs. NCBI_GenBank
Match: EWM29166.1 (hypothetical protein Naga_100007g115 [Nannochloropsis gaditana])

HSP 1 Score: 160.6 bits (405), Expect = 4.100e-36
Identity = 77/163 (47.24%), Postives = 112/163 (68.71%), Query Frame = 0 
Query:    1 MPVHSIYILNAQDKVLFRKHLDAKWRLISHIDDRLQWERVLYRNTRNKSPALPGASQFFQEREINVVYQGFYDVVVFLAGTDECDEMTLTDLLVVVQELLCLACGGKKKISAANASVESEFLHKDGGAFAKFSIYVDHMMPHGFVASTNVDLIDKLAKGKPVV 164
            MP+HS+YI+NA+  VL+ K   +  + + H   RLQWER LYR T  ++  +    QFF++ E+ VVY  F+DVV+ +AGTDEC+E  LT L+  + +L   AC GKKK  A   S E +F+HK+GGA+ +FSIY+D ++ HG VA+ NVD+ID+LAKG+ ++
Sbjct:   30 MPLHSVYIVNAEFIVLYGKVFPS--QAMGHNSGRLQWERALYRRT-GQNWQVASLPQFFRDGEVTVVYLRFHDVVMIVAGTDECNETILTGLIETISDLFSFACWGKKKKKATRGSAEMDFVHKEGGAYVRFSIYLDQLISHGIVATMNVDVIDRLAKGRSIL 189
The following BLAST results are available for this feature:
BLAST of NO01G02810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29166.14.100e-3647.24hypothetical protein Naga_100007g115 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02810.1NO01G02810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100007g115gene1417Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02810.1NO01G02810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02810 ID=NO01G02810|Name=NO01G02810|organism=Nannochloropsis oceanica|type=gene|length=630bp
ATGCCCGTGCACTCAATCTATATTCTCAACGCCCAAGACAAAGTCCTCTT
CCGTAAGCACCTAGACGCTAAATGGCGGCTGATAAGTCACATCGACGACC
GCCTCCAATGGGAGCGGGTACTCTACCGAAACACACGCAATAAATCACCT
GCATTGCCCGGCGCGTCTCAATTCTTTCAAGAAAGGGAAATAAACGTCGT
CTATCAAGGGTTCTACGACGTTGTCGTTTTTCTGGCCGGCACGGATGAGT
GTGACGAGATGACATgtacgtactgcgaaggaaaggattgcgattttcct
tccgcgtcattgtctttcataaggcacagaagccttccaattgttttcat
aaaaatccaatctacttaactttcgcgacacacacacacttacgcacaca
cagTGACGGACCTACTTGTCGTGGTGCAAGAACTTCTCTGTTTGGCATGT
GGGGGCAAAAAAAAAATAAGCGCCGCTAATGCTAGCGTTGAATCCGAGTT
TCTTCATAAAGATGGTGGAGCATTTGCCAAATTTTCTATTTATGTAGACC
ATATGATGCCACATGGTTTCGTGGCCTCGACAAACGTTGATCTCATTGAC
AAGCTGGCCAAGGGAAAACCAGTGGTATAA
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protein sequence of NO01G02810.1

>NO01G02810.1-protein ID=NO01G02810.1-protein|Name=NO01G02810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MPVHSIYILNAQDKVLFRKHLDAKWRLISHIDDRLQWERVLYRNTRNKSP
ALPGASQFFQEREINVVYQGFYDVVVFLAGTDECDEMTLTDLLVVVQELL
CLACGGKKKISAANASVESEFLHKDGGAFAKFSIYVDHMMPHGFVASTNV
DLIDKLAKGKPVV*
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Synonyms
Publications