NO01G02810.1, NO01G02810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02810.1
Unique NameNO01G02810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length492
Alignment locationchr1:727929..728558 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:727929..728558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02810.1 vs.
Match: EWM29166.1 (hypothetical protein Naga_100007g115 [Nannochloropsis gaditana])

HSP 1 Score: 160.6 bits (405), Expect = 4.100e-36
Identity = 77/163 (47.24%), Postives = 112/163 (68.71%), Query Frame = 0 
Query:    1 MPVHSIYILNAQDKVLFRKHLDAKWRLISHIDDRLQWERVLYRNTRNKSPALPGASQFFQEREINVVYQGFYDVVVFLAGTDECDEMTLTDLLVVVQELLCLACGGKKKISAANASVESEFLHKDGGAFAKFSIYVDHMMPHGFVASTNVDLIDKLAKGKPVV 164
            MP+HS+YI+NA+  VL+ K   ++   + H   RLQWER LYR T  ++  +    QFF++ E+ VVY  F+DVV+ +AGTDEC+E  LT L+  + +L   AC GKKK  A   S E +F+HK+GGA+ +FSIY+D ++ HG VA+ NVD+ID+LAKG+ ++
Sbjct:   30 MPLHSVYIVNAEFIVLYGKVFPSQ--AMGHNSGRLQWERALYRRT-GQNWQVASLPQFFRDGEVTVVYLRFHDVVMIVAGTDECNETILTGLIETISDLFSFACWGKKKKKATRGSAEMDFVHKEGGAYVRFSIYLDQLISHGIVATMNVDVIDRLAKGRSIL 189
The following BLAST results are available for this feature:
BLAST of NO01G02810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29166.14.100e-3647.24hypothetical protein Naga_100007g115 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02810NO01G02810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02810.1NO01G02810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02810.1.cds1NO01G02810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02810.1.cds2NO01G02810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02810.1 ID=NO01G02810.1|Name=NO01G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=492bp
ATGCCCGTGCACTCAATCTATATTCTCAACGCCCAAGACAAAGTCCTCTT
CCGTAAGCACCTAGACGCTAAATGGCGGCTGATAAGTCACATCGACGACC
GCCTCCAATGGGAGCGGGTACTCTACCGAAACACACGCAATAAATCACCT
GCATTGCCCGGCGCGTCTCAATTCTTTCAAGAAAGGGAAATAAACGTCGT
CTATCAAGGGTTCTACGACGTTGTCGTTTTTCTGGCCGGCACGGATGAGT
GTGACGAGATGACATTGACGGACCTACTTGTCGTGGTGCAAGAACTTCTC
TGTTTGGCATGTGGGGGCAAAAAAAAAATAAGCGCCGCTAATGCTAGCGT
TGAATCCGAGTTTCTTCATAAAGATGGTGGAGCATTTGCCAAATTTTCTA
TTTATGTAGACCATATGATGCCACATGGTTTCGTGGCCTCGACAAACGTT
GATCTCATTGACAAGCTGGCCAAGGGAAAACCAGTGGTATAA
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protein sequence of NO01G02810.1

>NO01G02810.1-protein ID=NO01G02810.1-protein|Name=NO01G02810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MPVHSIYILNAQDKVLFRKHLDAKWRLISHIDDRLQWERVLYRNTRNKSP
ALPGASQFFQEREINVVYQGFYDVVVFLAGTDECDEMTLTDLLVVVQELL
CLACGGKKKISAANASVESEFLHKDGGAFAKFSIYVDHMMPHGFVASTNV
DLIDKLAKGKPVV*
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mRNA from alignment at chr1:727929..728558-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02810.1 ID=NO01G02810.1|Name=NO01G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=630bp|location=Sequence derived from alignment at chr1:727929..728558- (Nannochloropsis oceanica)
ATGCCCGTGCACTCAATCTATATTCTCAACGCCCAAGACAAAGTCCTCTT
CCGTAAGCACCTAGACGCTAAATGGCGGCTGATAAGTCACATCGACGACC
GCCTCCAATGGGAGCGGGTACTCTACCGAAACACACGCAATAAATCACCT
GCATTGCCCGGCGCGTCTCAATTCTTTCAAGAAAGGGAAATAAACGTCGT
CTATCAAGGGTTCTACGACGTTGTCGTTTTTCTGGCCGGCACGGATGAGT
GTGACGAGATGACATGTACGTACTGCGAAGGAAAGGATTGCGATTTTCCT
TCCGCGTCATTGTCTTTCATAAGGCACAGAAGCCTTCCAATTGTTTTCAT
AAAAATCCAATCTACTTAACTTTCGCGACACACACACACTTACGCACACA
CAGTGACGGACCTACTTGTCGTGGTGCAAGAACTTCTCTGTTTGGCATGT
GGGGGCAAAAAAAAAATAAGCGCCGCTAATGCTAGCGTTGAATCCGAGTT
TCTTCATAAAGATGGTGGAGCATTTGCCAAATTTTCTATTTATGTAGACC
ATATGATGCCACATGGTTTCGTGGCCTCGACAAACGTTGATCTCATTGAC
AAGCTGGCCAAGGGAAAACCAGTGGTATAA
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Coding sequence (CDS) from alignment at chr1:727929..728558-

>NO01G02810.1 ID=NO01G02810.1|Name=NO01G02810.1|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at chr1:727929..728558- (Nannochloropsis oceanica)
ATGCCCGTGCACTCAATCTATATTCTCAACGCCCAAGACAAAGTCCTCTT
CCGTAAGCACCTAGACGCTAAATGGCGGCTGATAAGTCACATCGACGACC
GCCTCCAATGGGAGCGGGTACTCTACCGAAACACACGCAATAAATCACCT
GCATTGCCCGGCGCGTCTCAATTCTTTCAAGAAAGGGAAATAAACGTCGT
CTATCAAGGGTTCTACGACGTTGTCGTTTTTCTGGCCGGCACGGATGAGT
GTGACGAGATGACATTGACGGACCTACTTGTCGTGGTGCAAGAACTTCTC
TGTTTGGCATGTGGGGGCAAAAAAAAAATAAGCGCCGCTAATGCTAGCGT
TGAATCCGAGTTTCTTCATAAAGATGGTGGAGCATTTGCCAAATTTTCTA
TTTATGTAGACCATATGATGCCACATGGTTTCGTGGCCTCGACAAACGTT
GATCTCATTGACAAGCTGGCCAAGGGAAAACCAGTGGTATAA
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Synonyms
Publications