NO01G02370, NO01G02370 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO01G02370 vs. NCBI_GenBank
Match: EWM29150.1 (poly rna polymerase [Nannochloropsis gaditana]) HSP 1 Score: 352.4 bits (903), Expect = 3.100e-93 Identity = 349/698 (50.00%), Postives = 411/698 (58.88%), Query Frame = 0 Query: 1 MTEDSNWNQDTLLVSLWEWFCKLGSEERMQALAIDDPLWIRLYLKLFKHELKSRNKKLVGAGQHQASASPSSXXXXXXXXXXXXXXXKLPHRQPL---------CYSVRREKVNYMYSRLLKQQLQHQQHVWAGCLPSSSSKCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTEGYRIALGQQ-------KQETWKDREDMEHGELAGGIDNETTAQLAGYLLQRSLRICSLGATPLDTLTLGASAVEDAEALYQLLRAVTKGAFLSKPLTAATVKQLSLK--------------------XXXXXXXXXXXXXXXXRPWRAARVVGVELGRPELHPMRLERTEAQKETVPLRDLLVSRLELSLWVAFWRRVHRCPAPAPRVSAGLKAVAVQTKHLQAFAAKLQPAEQAALFEGLRPAQQLLLQQLQLQLPGEEEERVIRPCRKDEKHQQEGLERARESRAQVMMERLLLMPVHWVYQDEGKAVRRALERVQAACADSVARELLNDDDWGS-----IGSSXXXXXXXXXXXXXXXXXXXXLKELQRLGKQLR------AEAEASMLMAARQMNNIGLH---------------EGGRKVEDEE---DLAVQSSSVSSAVRVPFAAKSGQRAAGLVTAMVMEEGKDDDGSWAEVGPRGVVVKKPSLASTL 634 MT DS W Q TLL SLWEWF +L +ERMQAL IDDPLWIRLYLKLFKHELKSRNKK G+H XXXXXX + P CY+V+R+K+NYMY RL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L EGYRI QQ ++ + D++ ++ ++ T A LLQRSLR+C+LGATPLDTLTL AVEDAEALYQLLRAVT GAFLSKPL AT KQLSL+ XXXXXXXXXXXXXXXX + + PE P E KET+PLR LLVSRLELSLWVA+WRR++RC PRV GLK V Q KHLQ FA K PA+ AALFEGLRPAQ +LLQQ L++ G ++V+R CR+ +H +G R AQ+MMERLLL+P+HWVYQDEGK VRR LER+QAACAD VA+ELL +D+ S GS XXXXXXXXXXXXXXXXX L++ G R E+ + A N + L RK++ E+ D ++ S SSA R+ + S ++ GLVTA+V E+ +D W EVG RG V+K PSL +L Sbjct: 1 MTHDSTWQQATLLSSLWEWFSELRPDERMQALTIDDPLWIRLYLKLFKHELKSRNKK---PGRHLQXXXXXXXXXXXXSSLSASCPSLVGTHSPXXXXXXXXXSCYTVKRDKINYMYGRL-----------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFALAAEEEEHSLIEGYRIPWSQQGDVRKRAGRKGERSNSDIDGNDMKREQGSQVTLMCADRLLQRSLRVCTLGATPLDTLTLSQPAVEDAEALYQLLRAVTDGAFLSKPLPTATAKQLSLQSSAVAAISGGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALPMVLPEA-PWLQECMGEDKETIPLRYLLVSRLELSLWVAYWRRMNRCSVSGPRVPVGLKGVTEQIKHLQEFALKADPAQLAALFEGLRPAQHVLLQQQPLKMTG---DKVVR-CREGGEHSLDGSGSMR--TAQLMMERLLLIPLHWVYQDEGKIVRRVLERIQAACADLVAQELLMEDEARSNMSTDTGSCNQXXXXXXXXXXXXXXXXXEQLRLEKQGVVPRTSLPKVGESTIDRGLGAVMSNGLRLEGTPDVDGHQMEEQLFANRRKIKGEDGVVDEEMRPFSGSSAFRIRRSTDSARKTTGLVTAVVKEDREDQGDLWEEVGRRGTVMKNPSLPPSL 665
BLAST of NO01G02370 vs. NCBI_GenBank
Match: XP_005856305.1 (poly rna polymerase, partial [Nannochloropsis gaditana CCMP526] >EKU20055.1 poly rna polymerase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 210.7 bits (535), Expect = 1.400e-50 Identity = 161/322 (50.00%), Postives = 203/322 (63.04%), Query Frame = 0 Query: 340 KETVPLRDLLVSRLELSLWVAFWRRVHRCPAPAPRVSAGLKAVAVQTKHLQAFAAKLQPAEQAALFEGLRPAQQLLLQQLQLQLPGEEEERVIRPCRKDEKHQQEGLERARESRAQVMMERLLLMPVHWVYQDEGKAVRRALERVQAACADSVARELLNDDDWGS-----IGSSXXXXXXXXXXXXXXXXXXXXLKELQRLGKQLR------AEAEASMLMAARQMNNIGL--------HE------GGRKVEDEE---DLAVQSSSVSSAVRVPFAAKSGQRAAGLVTAMVMEEGKDDDGSWAEVGPRGVVVKKPSLASTL 634 KET+PLR LLVSRLELSLWVA+WRR++RC PRV GLK V Q KHLQ FA K PA+ AALFEGLRPAQ +LLQQ L++ G ++V+R CR+ +H +G R AQ+MMERLLL+P+HWVYQDEGK VRR LER+QAACAD VA+ELL +D+ S GS XXXXXXXXXXXXXXXXX L++ G R E+ + A N + L H+ R+++ E+ D ++ S SSA R+ + S ++ GLVTA+V E+ +D D W EVG RG V+KKPSL +L Sbjct: 72 KETIPLRYLLVSRLELSLWVAYWRRMNRCSVSGPRVPVGLKGVTEQIKHLQEFALKADPAQLAALFEGLRPAQHVLLQQQPLKMTG---DKVVR-CREGGEHSLDGSGSMR--TAQLMMERLLLIPLHWVYQDEGKIVRRVLERIQAACADLVAQELLMEDEARSNMSTDTGSCNQXXXXXXXXXXXXXXXXXEQLRLEKQGVVPRTSLPKVGESTIDRGLGAVMSNGLRLEGTPDVDGHQMEEQLFANRRIKGEDGVVDEEMRPFSGSSAFRIRRSTDSARKTTGLVTAVVKEDREDQDDLWEEVGRRGTVMKKPSLPPSL 387 The following BLAST results are available for this feature:
BLAST of NO01G02370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 2
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G02370 ID=NO01G02370|Name=NO01G02370|organism=Nannochloropsis oceanica|type=gene|length=2111bpback to top protein sequence of NO01G02370.1 >NO01G02370.1-protein ID=NO01G02370.1-protein|Name=NO01G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=686bpback to top Synonyms
Publications
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