NO01G02370, NO01G02370 (gene) Nannochloropsis oceanica

Overview
NameNO01G02370
Unique NameNO01G02370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2111
Alignment locationchr1:612240..614350 -

Link to JBrowse

Properties
Property NameValue
DescriptionPoly rna polymerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:612240..614350 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO01G02370 vs. NCBI_GenBank
Match: EWM29150.1 (poly rna polymerase [Nannochloropsis gaditana])

HSP 1 Score: 352.4 bits (903), Expect = 3.100e-93
Identity = 349/698 (50.00%), Postives = 411/698 (58.88%), Query Frame = 0
Query:    1 MTEDSNWNQDTLLVSLWEWFCKLGSEERMQALAIDDPLWIRLYLKLFKHELKSRNKKLVGAGQHQASASPSSXXXXXXXXXXXXXXXKLPHRQPL---------CYSVRREKVNYMYSRLLKQQLQHQQHVWAGCLPSSSSKCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTEGYRIALGQQ-------KQETWKDREDMEHGELAGGIDNETTAQLAGYLLQRSLRICSLGATPLDTLTLGASAVEDAEALYQLLRAVTKGAFLSKPLTAATVKQLSLK--------------------XXXXXXXXXXXXXXXXRPWRAARVVGVELGRPELHPMRLERTEAQKETVPLRDLLVSRLELSLWVAFWRRVHRCPAPAPRVSAGLKAVAVQTKHLQAFAAKLQPAEQAALFEGLRPAQQLLLQQLQLQLPGEEEERVIRPCRKDEKHQQEGLERARESRAQVMMERLLLMPVHWVYQDEGKAVRRALERVQAACADSVARELLNDDDWGS-----IGSSXXXXXXXXXXXXXXXXXXXXLKELQRLGKQLR------AEAEASMLMAARQMNNIGLH---------------EGGRKVEDEE---DLAVQSSSVSSAVRVPFAAKSGQRAAGLVTAMVMEEGKDDDGSWAEVGPRGVVVKKPSLASTL 634
            MT DS W Q TLL SLWEWF +L  +ERMQAL IDDPLWIRLYLKLFKHELKSRNKK    G+H        XXXXXX          +    P          CY+V+R+K+NYMY RL                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             L EGYRI   QQ        ++  +   D++  ++     ++ T   A  LLQRSLR+C+LGATPLDTLTL   AVEDAEALYQLLRAVT GAFLSKPL  AT KQLSL+                    XXXXXXXXXXXXXXXX          + +  PE  P   E     KET+PLR LLVSRLELSLWVA+WRR++RC    PRV  GLK V  Q KHLQ FA K  PA+ AALFEGLRPAQ +LLQQ  L++ G   ++V+R CR+  +H  +G    R   AQ+MMERLLL+P+HWVYQDEGK VRR LER+QAACAD VA+ELL +D+  S      GS   XXXXXXXXXXXXXXXXX    L++ G   R       E+     + A   N + L                   RK++ E+   D  ++  S SSA R+  +  S ++  GLVTA+V E+ +D    W EVG RG V+K PSL  +L
Sbjct:    1 MTHDSTWQQATLLSSLWEWFSELRPDERMQALTIDDPLWIRLYLKLFKHELKSRNKK---PGRHLQXXXXXXXXXXXXSSLSASCPSLVGTHSPXXXXXXXXXSCYTVKRDKINYMYGRL-----------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFALAAEEEEHSLIEGYRIPWSQQGDVRKRAGRKGERSNSDIDGNDMKREQGSQVTLMCADRLLQRSLRVCTLGATPLDTLTLSQPAVEDAEALYQLLRAVTDGAFLSKPLPTATAKQLSLQSSAVAAISGGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALPMVLPEA-PWLQECMGEDKETIPLRYLLVSRLELSLWVAYWRRMNRCSVSGPRVPVGLKGVTEQIKHLQEFALKADPAQLAALFEGLRPAQHVLLQQQPLKMTG---DKVVR-CREGGEHSLDGSGSMR--TAQLMMERLLLIPLHWVYQDEGKIVRRVLERIQAACADLVAQELLMEDEARSNMSTDTGSCNQXXXXXXXXXXXXXXXXXEQLRLEKQGVVPRTSLPKVGESTIDRGLGAVMSNGLRLEGTPDVDGHQMEEQLFANRRKIKGEDGVVDEEMRPFSGSSAFRIRRSTDSARKTTGLVTAVVKEDREDQGDLWEEVGRRGTVMKNPSLPPSL 665          
BLAST of NO01G02370 vs. NCBI_GenBank
Match: XP_005856305.1 (poly rna polymerase, partial [Nannochloropsis gaditana CCMP526] >EKU20055.1 poly rna polymerase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 210.7 bits (535), Expect = 1.400e-50
Identity = 161/322 (50.00%), Postives = 203/322 (63.04%), Query Frame = 0
Query:  340 KETVPLRDLLVSRLELSLWVAFWRRVHRCPAPAPRVSAGLKAVAVQTKHLQAFAAKLQPAEQAALFEGLRPAQQLLLQQLQLQLPGEEEERVIRPCRKDEKHQQEGLERARESRAQVMMERLLLMPVHWVYQDEGKAVRRALERVQAACADSVARELLNDDDWGS-----IGSSXXXXXXXXXXXXXXXXXXXXLKELQRLGKQLR------AEAEASMLMAARQMNNIGL--------HE------GGRKVEDEE---DLAVQSSSVSSAVRVPFAAKSGQRAAGLVTAMVMEEGKDDDGSWAEVGPRGVVVKKPSLASTL 634
            KET+PLR LLVSRLELSLWVA+WRR++RC    PRV  GLK V  Q KHLQ FA K  PA+ AALFEGLRPAQ +LLQQ  L++ G   ++V+R CR+  +H  +G    R   AQ+MMERLLL+P+HWVYQDEGK VRR LER+QAACAD VA+ELL +D+  S      GS   XXXXXXXXXXXXXXXXX    L++ G   R       E+     + A   N + L        H+        R+++ E+   D  ++  S SSA R+  +  S ++  GLVTA+V E+ +D D  W EVG RG V+KKPSL  +L
Sbjct:   72 KETIPLRYLLVSRLELSLWVAYWRRMNRCSVSGPRVPVGLKGVTEQIKHLQEFALKADPAQLAALFEGLRPAQHVLLQQQPLKMTG---DKVVR-CREGGEHSLDGSGSMR--TAQLMMERLLLIPLHWVYQDEGKIVRRVLERIQAACADLVAQELLMEDEARSNMSTDTGSCNQXXXXXXXXXXXXXXXXXEQLRLEKQGVVPRTSLPKVGESTIDRGLGAVMSNGLRLEGTPDVDGHQMEEQLFANRRIKGEDGVVDEEMRPFSGSSAFRIRRSTDSARKTTGLVTAVVKEDREDQDDLWEEVGRRGTVMKKPSLPPSL 387          
The following BLAST results are available for this feature:
BLAST of NO01G02370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29150.13.100e-9350.00poly rna polymerase [Nannochloropsis gaditana][more]
XP_005856305.11.400e-5050.00poly rna polymerase, partial [Nannochloropsis gadi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL002nonsL002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR086ngnoR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02370.1NO01G02370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02370.1NO01G02370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02370 ID=NO01G02370|Name=NO01G02370|organism=Nannochloropsis oceanica|type=gene|length=2111bp
ATGACTGAAGACAGCAATTGGAACCAGGACACGCTGCTGGTCTCCCTATG
GGAATGGTTCTGCAAATTAGGGTCTGAGGAGCGCATGCAGGCCTTGGCCA
TCGACGACCCGCTGTGGATTCGGTTGTACCTGAAGTTATTCAAGCACGAA
CTGAAGTCTCGTAATAAAAAGCTTGTAGGCGCTGGACAGCATCAGGCCTC
GGCCTCGCCTTCCTCGCCGCCCGCCGCGCCCTTGCCGTCGTCCCCGCTCT
CGTCTCCCCAAAAATTACCACACCGGCAGCCGCTGTGCTACTCAGTCAGG
CGCGAGAAGGTTAACTACATGTACAGCCGTCTCCTCAAGCAACAGCTGCA
GCATCAACAACATGTGTGGGCGGGCTGCTTGCCCAGCAGCAGTAGTAAAT
GCCACAGCAACATCAATACCACCACAACCAACAGCAGCAGCGGTATCGGA
AGCCGTGGCGATACTCCTGTGGGAGTATCCAGTGACCCCGACGATTTGGA
GGAGGCCAAGAGCGTGGAGGAGGAGGAGGAGGAACTGGAGGTAGCTTTGG
CGGCAGAGGAGGAGGAGCATACACTTACAGAGGGTTATAGAATAGCCTTG
GGGCAACAGAAGCAGGAGACCTGGAAGGATAGGGAGGACATGGAGCATGG
AGAGCTGGCGGGTGGAATTGACAATGAGACTACGGCACAGCTCGCGGGTT
ACCTATTACAGCGGAGCTTGCGGATCTGCAGCCTGGGTGCCACGCCGCTG
GACACTCTCACTCTTGGGGCGTCGGCGGTGGAGGATGCCGAGGCCCTGTA
CCAGCTGCTGCGCGCGGTTACCAAGGGGGCCTTTTTATCCAAGCCCCTTA
CTGCTGCCACGGTCAAGCAATTGAGCCTGAAAGCCTCCGCCGCGGCAGCT
GCGGGTGGGGGGGGGGGGGATCGTCATCGGCGGCCATGGCGGGCGGCTCG
GGTAGTGGGAGTGGAATTGGGACGTCCGGAGTTGCATCCAATGCGGTTGg
tacgagcgccgccggcttttctgtggtcttgccggaagcaccctggctgc
agGAGCGGACGGAAGCGCAGAAGGAAACGGTGCCGCTGCGAGACTTGCTG
GTGAGTCGGCTCGAGCTGTCCCTGTGGGTGGCCTTCTGGCGGCGGGTGCA
CCGGTGTCCCGCGCCCGCGCCTCGGGTCTCGGCCGGGCTAAAGGCCGTGG
CCGTACAAACCAAGCACCTGCAAGCCTTCGCCGCCAAGCTGCAGCCCGCA
GAGCAGGCGGCGCTCTTCGAGGGCCTACGTCCCGCTCAGCAGCTGCTGCT
CCAGCAGCTGCAGCTACAGCTGCCTGGCGAGGAAGAAGAAAGAGTGATAA
GACCATGTAGAAAGGATGAGAAGCATCAGCAGGAGGGGCTAGAACGTGCC
CGTGAGTCCAGAGCACAGGTGATGATGGAGCGACTCCTGCTTATGCCCGT
GCACTGGGTGTACCAGGACGAGGGGAAGGCGGTGCGCCGGGCCTTGGAGC
GGGTGCAGGCGGCATGTGCGGACTCCGTGGCCAGGGAGCTGCTGAACGAC
GACGATTGGGGCAGCATTGGCAGCAGCTACACCAGTGCTTCGGCGGCCTG
TACTGCGGGCAAGAAAAAGAAGAAGCAGCAGCAGCGTTTGAAGGAATTAC
AGAGGCTGGGAAAGCAGCTGAGGGCCGAGGCCGAAGCATCAATGTTGATG
GCGGCAAGGCAGATGAATAACATCGGGCTGCATGAGGGAGGGAGAAAGGT
AGAGGACGAGGAAGACTTGGCAGTCCAAAGTTCTTCGGTGTCGTCGGCCG
TGAGAGTGCCCTTCGCGGCGAAGAGCGGGCAGAGGGCAGCCGGTCTGGTC
ACGGCTATGGTGATGGAGGAGGGGAAAGATGATGACGGGTCATGGGCGGA
AGTGGGACCGCGGGGTGTTGTCGTAAAGAAGCCGTCTTTGGCATCGACAC
TGGTTCCGCCGGCTTTTGAAGCCTTCCCTCCCTTGCGCCTTCCCACTACC
TTCCTCTCAAGCAAAGCAACAGCGGGTGAGAAAATATTGAAGAAGGGGCG
GGGGCAGGAGGCCTCTTCCGTGCCATTGTCTCCAGTAGCACCCCCCCCCC
TCCTGCATTGA
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protein sequence of NO01G02370.1

>NO01G02370.1-protein ID=NO01G02370.1-protein|Name=NO01G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=686bp
MTEDSNWNQDTLLVSLWEWFCKLGSEERMQALAIDDPLWIRLYLKLFKHE
LKSRNKKLVGAGQHQASASPSSPPAAPLPSSPLSSPQKLPHRQPLCYSVR
REKVNYMYSRLLKQQLQHQQHVWAGCLPSSSSKCHSNINTTTTNSSSGIG
SRGDTPVGVSSDPDDLEEAKSVEEEEEELEVALAAEEEEHTLTEGYRIAL
GQQKQETWKDREDMEHGELAGGIDNETTAQLAGYLLQRSLRICSLGATPL
DTLTLGASAVEDAEALYQLLRAVTKGAFLSKPLTAATVKQLSLKASAAAA
AGGGGGDRHRRPWRAARVVGVELGRPELHPMRLERTEAQKETVPLRDLLV
SRLELSLWVAFWRRVHRCPAPAPRVSAGLKAVAVQTKHLQAFAAKLQPAE
QAALFEGLRPAQQLLLQQLQLQLPGEEEERVIRPCRKDEKHQQEGLERAR
ESRAQVMMERLLLMPVHWVYQDEGKAVRRALERVQAACADSVARELLNDD
DWGSIGSSYTSASAACTAGKKKKKQQQRLKELQRLGKQLRAEAEASMLMA
ARQMNNIGLHEGGRKVEDEEDLAVQSSSVSSAVRVPFAAKSGQRAAGLVT
AMVMEEGKDDDGSWAEVGPRGVVVKKPSLASTLVPPAFEAFPPLRLPTTF
LSSKATAGEKILKKGRGQEASSVPLSPVAPPPLLH*
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Synonyms
Publications