NO01G02370.1, NO01G02370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02370.1
Unique NameNO01G02370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2058
Alignment locationchr1:612240..614350 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:612240..614350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G02370.1 vs.
Match: EWM29150.1 (poly rna polymerase [Nannochloropsis gaditana])

HSP 1 Score: 463.8 bits (1192), Expect = 9.500e-127
Identity = 329/701 (46.93%), Postives = 410/701 (58.49%), Query Frame = 0 
Query:    1 MTEDSNWNQDTLLVSLWEWFCKLGSEERMQALAIDDPLWIRLYLKLFKHELKSRNKKLVGAGQH--------QASASPSSPPAA-PLPSSPLSSPQKLPHRQPLCYSVRREKVNYMYSRLLKQQLQHQQHVWAGCLPSSSSKCHSNINTTTTNSSSGIGSRGDTPVGVSSDPDDLEEAKSVEEEEEELEVALAAEEEEHTLTEGYRIALGQQK-------QETWKDREDMEHGELAGGIDNETTAQLAGYLLQRSLRICSLGATPLDTLTLGASAVEDAEALYQLLRAVTKGAFLSKPLTAATVKQLSLKASAAAAAGGGGGD------------------RHRRPWRAARV--VGVELGRPELHPMRLERTEAQKETVPLRDLLVSRLELSLWVAFWRRVHRCPAPAPRVSAGLKAVAVQTKHLQAFAAKLQPAEQAALFEGLRPAQQLLLQQLQLQLPGEEEERVIRPCRKDEKHQQEGLERARESRAQVMMERLLLMPVHWVYQDEGKAVRRALERVQAACADSVARELLNDDDWGSIGSSYTSASAACTAGKKKKK-----QQQRLKELQRLGKQ-------LRAEAEASMLMAARQMNNIGLHEGG-----------------RKVEDEE---DLAVQSSSVSSAVRVPFAAKSGQRAAGLVTAMVMEEGKDDDGSWAEVGPRGVVVKKPSLASTL 634
            MT DS W Q TLL SLWEWF +L  +ERMQAL IDDPLWIRLYLKLFKHELKSRNKK    G+H        +    PSS  A+ P      S P++     P CY+V+R+K+NYMY RLLKQQ   QQH  A                     S+G GSR     G + D DDLEE K +EE+++EL+ ALAAEEEEH+L EGYRI   QQ        ++  +   D++  ++     ++ T   A  LLQRSLR+C+LGATPLDTLTL   AVEDAEALYQLLRAVT GAFLSKPL  AT KQLSL++SA AA  GGG                        P  A+      + +  PE  P   E     KET+PLR LLVSRLELSLWVA+WRR++RC    PRV  GLK V  Q KHLQ FA K  PA+ AALFEGLRPAQ +LLQQ  L++ G   ++V+R CR+  +H  +G    R   AQ+MMERLLL+P+HWVYQDEGK VRR LER+QAACAD VA+ELL +D+     S+ ++ + +C   KKKKK     QQQR+KE  RL KQ       L    E+++      + + GL   G                 RK++ E+   D  ++  S SSA R+  +  S ++  GLVTA+V E+ +D    W EVG RG V+K PSL  +L
Sbjct:    1 MTHDSTWQQATLLSSLWEWFSELRPDERMQALTIDDPLWIRLYLKLFKHELKSRNKK---PGRHLQQQHEQQEQQRGPSSLSASCPSLVGTHSPPKQQQQHPPSCYTVKRDKINYMYGRLLKQQ--QQQHAAA---------------------SAGNGSRALAAWGAAGDLDDLEENKGMEEDDDELDFALAAEEEEHSLIEGYRIPWSQQGDVRKRAGRKGERSNSDIDGNDMKREQGSQVTLMCADRLLQRSLRVCTLGATPLDTLTLSQPAVEDAEALYQLLRAVTDGAFLSKPLPTATAKQLSLQSSAVAAISGGGPGLSAAAVASVLSGGTGNTLNSSSPTLASHTGTTALPMVLPEA-PWLQECMGEDKETIPLRYLLVSRLELSLWVAYWRRMNRCSVSGPRVPVGLKGVTEQIKHLQEFALKADPAQLAALFEGLRPAQHVLLQQQPLKMTG---DKVVR-CREGGEHSLDGSGSMR--TAQLMMERLLLIPLHWVYQDEGKIVRRVLERIQAACADLVAQELLMEDE---ARSNMSTDTGSCNQAKKKKKKKQSQQQQRVKEQLRLEKQGVVPRTSLPKVGESTIDRGLGAVMSNGLRLEGTPDVDGHQMEEQLFANRRKIKGEDGVVDEEMRPFSGSSAFRIRRSTDSARKTTGLVTAVVKEDREDQGDLWEEVGRRGTVMKNPSLPPSL 665
The following BLAST results are available for this feature:
BLAST of NO01G02370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29150.19.500e-12746.93poly rna polymerase [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02370NO01G02370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02370.1NO01G02370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02370.1.cds1NO01G02370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02370.1.cds2NO01G02370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02370.1 ID=NO01G02370.1|Name=NO01G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2058bp
ATGACTGAAGACAGCAATTGGAACCAGGACACGCTGCTGGTCTCCCTATG
GGAATGGTTCTGCAAATTAGGGTCTGAGGAGCGCATGCAGGCCTTGGCCA
TCGACGACCCGCTGTGGATTCGGTTGTACCTGAAGTTATTCAAGCACGAA
CTGAAGTCTCGTAATAAAAAGCTTGTAGGCGCTGGACAGCATCAGGCCTC
GGCCTCGCCTTCCTCGCCGCCCGCCGCGCCCTTGCCGTCGTCCCCGCTCT
CGTCTCCCCAAAAATTACCACACCGGCAGCCGCTGTGCTACTCAGTCAGG
CGCGAGAAGGTTAACTACATGTACAGCCGTCTCCTCAAGCAACAGCTGCA
GCATCAACAACATGTGTGGGCGGGCTGCTTGCCCAGCAGCAGTAGTAAAT
GCCACAGCAACATCAATACCACCACAACCAACAGCAGCAGCGGTATCGGA
AGCCGTGGCGATACTCCTGTGGGAGTATCCAGTGACCCCGACGATTTGGA
GGAGGCCAAGAGCGTGGAGGAGGAGGAGGAGGAACTGGAGGTAGCTTTGG
CGGCAGAGGAGGAGGAGCATACACTTACAGAGGGTTATAGAATAGCCTTG
GGGCAACAGAAGCAGGAGACCTGGAAGGATAGGGAGGACATGGAGCATGG
AGAGCTGGCGGGTGGAATTGACAATGAGACTACGGCACAGCTCGCGGGTT
ACCTATTACAGCGGAGCTTGCGGATCTGCAGCCTGGGTGCCACGCCGCTG
GACACTCTCACTCTTGGGGCGTCGGCGGTGGAGGATGCCGAGGCCCTGTA
CCAGCTGCTGCGCGCGGTTACCAAGGGGGCCTTTTTATCCAAGCCCCTTA
CTGCTGCCACGGTCAAGCAATTGAGCCTGAAAGCCTCCGCCGCGGCAGCT
GCGGGTGGGGGGGGGGGGGATCGTCATCGGCGGCCATGGCGGGCGGCTCG
GGTAGTGGGAGTGGAATTGGGACGTCCGGAGTTGCATCCAATGCGGTTGG
AGCGGACGGAAGCGCAGAAGGAAACGGTGCCGCTGCGAGACTTGCTGGTG
AGTCGGCTCGAGCTGTCCCTGTGGGTGGCCTTCTGGCGGCGGGTGCACCG
GTGTCCCGCGCCCGCGCCTCGGGTCTCGGCCGGGCTAAAGGCCGTGGCCG
TACAAACCAAGCACCTGCAAGCCTTCGCCGCCAAGCTGCAGCCCGCAGAG
CAGGCGGCGCTCTTCGAGGGCCTACGTCCCGCTCAGCAGCTGCTGCTCCA
GCAGCTGCAGCTACAGCTGCCTGGCGAGGAAGAAGAAAGAGTGATAAGAC
CATGTAGAAAGGATGAGAAGCATCAGCAGGAGGGGCTAGAACGTGCCCGT
GAGTCCAGAGCACAGGTGATGATGGAGCGACTCCTGCTTATGCCCGTGCA
CTGGGTGTACCAGGACGAGGGGAAGGCGGTGCGCCGGGCCTTGGAGCGGG
TGCAGGCGGCATGTGCGGACTCCGTGGCCAGGGAGCTGCTGAACGACGAC
GATTGGGGCAGCATTGGCAGCAGCTACACCAGTGCTTCGGCGGCCTGTAC
TGCGGGCAAGAAAAAGAAGAAGCAGCAGCAGCGTTTGAAGGAATTACAGA
GGCTGGGAAAGCAGCTGAGGGCCGAGGCCGAAGCATCAATGTTGATGGCG
GCAAGGCAGATGAATAACATCGGGCTGCATGAGGGAGGGAGAAAGGTAGA
GGACGAGGAAGACTTGGCAGTCCAAAGTTCTTCGGTGTCGTCGGCCGTGA
GAGTGCCCTTCGCGGCGAAGAGCGGGCAGAGGGCAGCCGGTCTGGTCACG
GCTATGGTGATGGAGGAGGGGAAAGATGATGACGGGTCATGGGCGGAAGT
GGGACCGCGGGGTGTTGTCGTAAAGAAGCCGTCTTTGGCATCGACACTGG
TTCCGCCGGCTTTTGAAGCCTTCCCTCCCTTGCGCCTTCCCACTACCTTC
CTCTCAAGCAAAGCAACAGCGGGTGAGAAAATATTGAAGAAGGGGCGGGG
GCAGGAGGCCTCTTCCGTGCCATTGTCTCCAGTAGCACCCCCCCCCCTCC
TGCATTGA
back to top

protein sequence of NO01G02370.1

>NO01G02370.1-protein ID=NO01G02370.1-protein|Name=NO01G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=686bp
MTEDSNWNQDTLLVSLWEWFCKLGSEERMQALAIDDPLWIRLYLKLFKHE
LKSRNKKLVGAGQHQASASPSSPPAAPLPSSPLSSPQKLPHRQPLCYSVR
REKVNYMYSRLLKQQLQHQQHVWAGCLPSSSSKCHSNINTTTTNSSSGIG
SRGDTPVGVSSDPDDLEEAKSVEEEEEELEVALAAEEEEHTLTEGYRIAL
GQQKQETWKDREDMEHGELAGGIDNETTAQLAGYLLQRSLRICSLGATPL
DTLTLGASAVEDAEALYQLLRAVTKGAFLSKPLTAATVKQLSLKASAAAA
AGGGGGDRHRRPWRAARVVGVELGRPELHPMRLERTEAQKETVPLRDLLV
SRLELSLWVAFWRRVHRCPAPAPRVSAGLKAVAVQTKHLQAFAAKLQPAE
QAALFEGLRPAQQLLLQQLQLQLPGEEEERVIRPCRKDEKHQQEGLERAR
ESRAQVMMERLLLMPVHWVYQDEGKAVRRALERVQAACADSVARELLNDD
DWGSIGSSYTSASAACTAGKKKKKQQQRLKELQRLGKQLRAEAEASMLMA
ARQMNNIGLHEGGRKVEDEEDLAVQSSSVSSAVRVPFAAKSGQRAAGLVT
AMVMEEGKDDDGSWAEVGPRGVVVKKPSLASTLVPPAFEAFPPLRLPTTF
LSSKATAGEKILKKGRGQEASSVPLSPVAPPPLLH*
back to top

mRNA from alignment at chr1:612240..614350-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02370.1 ID=NO01G02370.1|Name=NO01G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2111bp|location=Sequence derived from alignment at chr1:612240..614350- (Nannochloropsis oceanica)
ATGACTGAAGACAGCAATTGGAACCAGGACACGCTGCTGGTCTCCCTATG
GGAATGGTTCTGCAAATTAGGGTCTGAGGAGCGCATGCAGGCCTTGGCCA
TCGACGACCCGCTGTGGATTCGGTTGTACCTGAAGTTATTCAAGCACGAA
CTGAAGTCTCGTAATAAAAAGCTTGTAGGCGCTGGACAGCATCAGGCCTC
GGCCTCGCCTTCCTCGCCGCCCGCCGCGCCCTTGCCGTCGTCCCCGCTCT
CGTCTCCCCAAAAATTACCACACCGGCAGCCGCTGTGCTACTCAGTCAGG
CGCGAGAAGGTTAACTACATGTACAGCCGTCTCCTCAAGCAACAGCTGCA
GCATCAACAACATGTGTGGGCGGGCTGCTTGCCCAGCAGCAGTAGTAAAT
GCCACAGCAACATCAATACCACCACAACCAACAGCAGCAGCGGTATCGGA
AGCCGTGGCGATACTCCTGTGGGAGTATCCAGTGACCCCGACGATTTGGA
GGAGGCCAAGAGCGTGGAGGAGGAGGAGGAGGAACTGGAGGTAGCTTTGG
CGGCAGAGGAGGAGGAGCATACACTTACAGAGGGTTATAGAATAGCCTTG
GGGCAACAGAAGCAGGAGACCTGGAAGGATAGGGAGGACATGGAGCATGG
AGAGCTGGCGGGTGGAATTGACAATGAGACTACGGCACAGCTCGCGGGTT
ACCTATTACAGCGGAGCTTGCGGATCTGCAGCCTGGGTGCCACGCCGCTG
GACACTCTCACTCTTGGGGCGTCGGCGGTGGAGGATGCCGAGGCCCTGTA
CCAGCTGCTGCGCGCGGTTACCAAGGGGGCCTTTTTATCCAAGCCCCTTA
CTGCTGCCACGGTCAAGCAATTGAGCCTGAAAGCCTCCGCCGCGGCAGCT
GCGGGTGGGGGGGGGGGGGATCGTCATCGGCGGCCATGGCGGGCGGCTCG
GGTAGTGGGAGTGGAATTGGGACGTCCGGAGTTGCATCCAATGCGGTTGG
TACGAGCGCCGCCGGCTTTTCTGTGGTCTTGCCGGAAGCACCCTGGCTGC
AGGAGCGGACGGAAGCGCAGAAGGAAACGGTGCCGCTGCGAGACTTGCTG
GTGAGTCGGCTCGAGCTGTCCCTGTGGGTGGCCTTCTGGCGGCGGGTGCA
CCGGTGTCCCGCGCCCGCGCCTCGGGTCTCGGCCGGGCTAAAGGCCGTGG
CCGTACAAACCAAGCACCTGCAAGCCTTCGCCGCCAAGCTGCAGCCCGCA
GAGCAGGCGGCGCTCTTCGAGGGCCTACGTCCCGCTCAGCAGCTGCTGCT
CCAGCAGCTGCAGCTACAGCTGCCTGGCGAGGAAGAAGAAAGAGTGATAA
GACCATGTAGAAAGGATGAGAAGCATCAGCAGGAGGGGCTAGAACGTGCC
CGTGAGTCCAGAGCACAGGTGATGATGGAGCGACTCCTGCTTATGCCCGT
GCACTGGGTGTACCAGGACGAGGGGAAGGCGGTGCGCCGGGCCTTGGAGC
GGGTGCAGGCGGCATGTGCGGACTCCGTGGCCAGGGAGCTGCTGAACGAC
GACGATTGGGGCAGCATTGGCAGCAGCTACACCAGTGCTTCGGCGGCCTG
TACTGCGGGCAAGAAAAAGAAGAAGCAGCAGCAGCGTTTGAAGGAATTAC
AGAGGCTGGGAAAGCAGCTGAGGGCCGAGGCCGAAGCATCAATGTTGATG
GCGGCAAGGCAGATGAATAACATCGGGCTGCATGAGGGAGGGAGAAAGGT
AGAGGACGAGGAAGACTTGGCAGTCCAAAGTTCTTCGGTGTCGTCGGCCG
TGAGAGTGCCCTTCGCGGCGAAGAGCGGGCAGAGGGCAGCCGGTCTGGTC
ACGGCTATGGTGATGGAGGAGGGGAAAGATGATGACGGGTCATGGGCGGA
AGTGGGACCGCGGGGTGTTGTCGTAAAGAAGCCGTCTTTGGCATCGACAC
TGGTTCCGCCGGCTTTTGAAGCCTTCCCTCCCTTGCGCCTTCCCACTACC
TTCCTCTCAAGCAAAGCAACAGCGGGTGAGAAAATATTGAAGAAGGGGCG
GGGGCAGGAGGCCTCTTCCGTGCCATTGTCTCCAGTAGCACCCCCCCCCC
TCCTGCATTGA
back to top

Coding sequence (CDS) from alignment at chr1:612240..614350-

>NO01G02370.1 ID=NO01G02370.1|Name=NO01G02370.1|organism=Nannochloropsis oceanica|type=CDS|length=2058bp|location=Sequence derived from alignment at chr1:612240..614350- (Nannochloropsis oceanica)
ATGACTGAAGACAGCAATTGGAACCAGGACACGCTGCTGGTCTCCCTATG
GGAATGGTTCTGCAAATTAGGGTCTGAGGAGCGCATGCAGGCCTTGGCCA
TCGACGACCCGCTGTGGATTCGGTTGTACCTGAAGTTATTCAAGCACGAA
CTGAAGTCTCGTAATAAAAAGCTTGTAGGCGCTGGACAGCATCAGGCCTC
GGCCTCGCCTTCCTCGCCGCCCGCCGCGCCCTTGCCGTCGTCCCCGCTCT
CGTCTCCCCAAAAATTACCACACCGGCAGCCGCTGTGCTACTCAGTCAGG
CGCGAGAAGGTTAACTACATGTACAGCCGTCTCCTCAAGCAACAGCTGCA
GCATCAACAACATGTGTGGGCGGGCTGCTTGCCCAGCAGCAGTAGTAAAT
GCCACAGCAACATCAATACCACCACAACCAACAGCAGCAGCGGTATCGGA
AGCCGTGGCGATACTCCTGTGGGAGTATCCAGTGACCCCGACGATTTGGA
GGAGGCCAAGAGCGTGGAGGAGGAGGAGGAGGAACTGGAGGTAGCTTTGG
CGGCAGAGGAGGAGGAGCATACACTTACAGAGGGTTATAGAATAGCCTTG
GGGCAACAGAAGCAGGAGACCTGGAAGGATAGGGAGGACATGGAGCATGG
AGAGCTGGCGGGTGGAATTGACAATGAGACTACGGCACAGCTCGCGGGTT
ACCTATTACAGCGGAGCTTGCGGATCTGCAGCCTGGGTGCCACGCCGCTG
GACACTCTCACTCTTGGGGCGTCGGCGGTGGAGGATGCCGAGGCCCTGTA
CCAGCTGCTGCGCGCGGTTACCAAGGGGGCCTTTTTATCCAAGCCCCTTA
CTGCTGCCACGGTCAAGCAATTGAGCCTGAAAGCCTCCGCCGCGGCAGCT
GCGGGTGGGGGGGGGGGGGATCGTCATCGGCGGCCATGGCGGGCGGCTCG
GGTAGTGGGAGTGGAATTGGGACGTCCGGAGTTGCATCCAATGCGGTTGG
AGCGGACGGAAGCGCAGAAGGAAACGGTGCCGCTGCGAGACTTGCTGGTG
AGTCGGCTCGAGCTGTCCCTGTGGGTGGCCTTCTGGCGGCGGGTGCACCG
GTGTCCCGCGCCCGCGCCTCGGGTCTCGGCCGGGCTAAAGGCCGTGGCCG
TACAAACCAAGCACCTGCAAGCCTTCGCCGCCAAGCTGCAGCCCGCAGAG
CAGGCGGCGCTCTTCGAGGGCCTACGTCCCGCTCAGCAGCTGCTGCTCCA
GCAGCTGCAGCTACAGCTGCCTGGCGAGGAAGAAGAAAGAGTGATAAGAC
CATGTAGAAAGGATGAGAAGCATCAGCAGGAGGGGCTAGAACGTGCCCGT
GAGTCCAGAGCACAGGTGATGATGGAGCGACTCCTGCTTATGCCCGTGCA
CTGGGTGTACCAGGACGAGGGGAAGGCGGTGCGCCGGGCCTTGGAGCGGG
TGCAGGCGGCATGTGCGGACTCCGTGGCCAGGGAGCTGCTGAACGACGAC
GATTGGGGCAGCATTGGCAGCAGCTACACCAGTGCTTCGGCGGCCTGTAC
TGCGGGCAAGAAAAAGAAGAAGCAGCAGCAGCGTTTGAAGGAATTACAGA
GGCTGGGAAAGCAGCTGAGGGCCGAGGCCGAAGCATCAATGTTGATGGCG
GCAAGGCAGATGAATAACATCGGGCTGCATGAGGGAGGGAGAAAGGTAGA
GGACGAGGAAGACTTGGCAGTCCAAAGTTCTTCGGTGTCGTCGGCCGTGA
GAGTGCCCTTCGCGGCGAAGAGCGGGCAGAGGGCAGCCGGTCTGGTCACG
GCTATGGTGATGGAGGAGGGGAAAGATGATGACGGGTCATGGGCGGAAGT
GGGACCGCGGGGTGTTGTCGTAAAGAAGCCGTCTTTGGCATCGACACTGG
TTCCGCCGGCTTTTGAAGCCTTCCCTCCCTTGCGCCTTCCCACTACCTTC
CTCTCAAGCAAAGCAACAGCGGGTGAGAAAATATTGAAGAAGGGGCGGGG
GCAGGAGGCCTCTTCCGTGCCATTGTCTCCAGTAGCACCCCCCCCCCTCC
TGCATTGA
back to top
Synonyms
Publications