NO01G02330, NO01G02330 (gene) Nannochloropsis oceanica

Overview
NameNO01G02330
Unique NameNO01G02330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length323
Alignment locationchr1:603755..604077 +

Link to JBrowse

Properties
Property NameValue
DescriptionTransport protein sec61 subunit gamma
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:603755..604077 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006605protein targeting
GO:0006886intracellular protein transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR023391Prot_translocase_SecE_dom
IPR001901Translocase_SecE/Sec61-g
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Homology
[Close]
BLAST of NO01G02330 vs. NCBI_GenBank
Match: EWM29108.1 (transport protein sec61 subunit gamma [Nannochloropsis gaditana])

HSP 1 Score: 139.8 bits (351), Expect = 3.200e-30
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0 
Query:    1 MSDVNAHIIQPLKKFAKDSTHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGGI 71
            MSDVNAHIIQPLKKFAKDS+HLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGGI
Sbjct:   24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGGI 93
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BLAST of NO01G02330 vs. NCBI_GenBank
Match: XP_008872507.1 (protein transporter Sec61 subunit gamma [Aphanomyces invadans] >XP_009839683.1 protein transporter Sec61 subunit gamma [Aphanomyces astaci] >ETV71020.1 protein transporter Sec61 subunit gamma [Aphanomyces astaci] >ETV99079.1 protein transporter Sec61 subunit gamma [Aphanomyces invadans])

HSP 1 Score: 121.3 bits (303), Expect = 1.200e-24
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 0 
Query:    1 MSDVNAHIIQPLKKFAKDSTHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 70
            MSDVNA +I+PLK+FAK+S HLVKKCTKPDRKEFARIA AT VGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct:    1 MSDVNALVIEPLKQFAKNSVHLVKKCTKPDRKEFARIAGATGVGFLLMGFIGFFVKLVHIPINNILVGG 69
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BLAST of NO01G02330 vs. NCBI_GenBank
Match: OQS01245.1 (Type II (General) Secretory Pathway (IISP) Family [Achlya hypogyna])

HSP 1 Score: 120.2 bits (300), Expect = 2.700e-24
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 0 
Query:    1 MSDVNAHIIQPLKKFAKDSTHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 70
            MSDVNA +I+PLK FAK+S HLVKKCTKPDRKEF RIA ATSVGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct:    1 MSDVNAIVIEPLKAFAKNSVHLVKKCTKPDRKEFTRIAGATSVGFLMMGFIGFFVKLVHIPINNILVGG 69
[Close]
BLAST of NO01G02330 vs. NCBI_GenBank
Match: OQS06499.1 (Type II (General) Secretory Pathway (IISP) Family [Thraustotheca clavata])

HSP 1 Score: 120.2 bits (300), Expect = 2.700e-24
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 0 
Query:    1 MSDVNAHIIQPLKKFAKDSTHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 70
            MSDVNA +I+PLK FAK+S HLVKKCTKPDRKEF RIA ATSVGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct:    1 MSDVNAIVIEPLKTFAKNSVHLVKKCTKPDRKEFTRIAGATSVGFLMMGFIGFFVKLVHIPINNILVGG 69
[Close]
BLAST of NO01G02330 vs. NCBI_GenBank
Match: XP_008613126.1 (protein translocase SEC61 complex gamma subunit [Saprolegnia diclina VS20] >XP_012205313.1 translocase SEC61 complex gamma subunit [Saprolegnia parasitica CBS 223.65] >XP_012211965.1 translocase SEC61 complex gamma subunit [Saprolegnia parasitica CBS 223.65] >EQC33486.1 protein translocase SEC61 complex gamma subunit [Saprolegnia diclina VS20] >KDO17329.1 translocase SEC61 complex gamma subunit [Saprolegnia parasitica CBS 223.65] >KDO23992.1 translocase SEC61 complex gamma subunit [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 119.4 bits (298), Expect = 4.500e-24
Identity = 57/69 (82.61%), Postives = 64/69 (92.75%), Query Frame = 0 
Query:    1 MSDVNAHIIQPLKKFAKDSTHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 70
            MSDVNA +I+PLK FAK+S HLVKKCTKPDRKEF RIA ATS+GFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct:    1 MSDVNAIVIEPLKAFAKNSIHLVKKCTKPDRKEFTRIAGATSIGFLMMGFIGFFVKLVHIPINNILVGG 69
[Close]
BLAST of NO01G02330 vs. NCBI_GenBank
Match: GAX98386.1 (protein transporter Sec61 subunit gamma [Pythium insidiosum])

HSP 1 Score: 116.7 bits (291), Expect = 2.900e-23
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 0 
Query:    1 MSDVNAHIIQPLKKFAKDSTHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 70
            MSDVN  + QPL++F K+S HLVKKCTKPDRKEFARIA ATSVGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct:    1 MSDVNTLVFQPLQQFFKNSVHLVKKCTKPDRKEFARIAGATSVGFLMMGFIGFFVKLVHIPINNILVGG 69
[Close]
BLAST of NO01G02330 vs. NCBI_GenBank
Match: CBN73851.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 115.5 bits (288), Expect = 6.500e-23
Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 0 
Query:    1 MSDVNAHIIQPLKKFAKDSTHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 70
            MSDVN  +IQPL+KF+KDS HL+KKCTKPDRKEF ++A AT+VGFL+MGFIGFFVKL+HIPINNIL+ G
Sbjct:    1 MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMAG 69
[Close]
BLAST of NO01G02330 vs. NCBI_GenBank
Match: XP_024585145.1 (protein translocase sec61 complex gamma archaeal and eukaryotic [Plasmopara halstedii] >CEG48776.1 protein translocase sec61 complex gamma archaeal and eukaryotic [Plasmopara halstedii])

HSP 1 Score: 115.5 bits (288), Expect = 6.500e-23
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 0 
Query:    1 MSDVNAHIIQPLKKFAKDSTHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 70
            MSD+NA ++QPL +F K+S HL+KKC KPDRKEFARIA ATSVGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct:    1 MSDINALVLQPLNQFFKNSLHLIKKCNKPDRKEFARIAGATSVGFLMMGFIGFFVKLVHIPINNILVGG 69
[Close]
BLAST of NO01G02330 vs. NCBI_GenBank
Match: XP_002896502.1 (Type II (General) Secretory Pathway (IISP) Family [Phytophthora infestans T30-4] >XP_008895534.1 protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica INRA-310] >EEY67050.1 Type II (General) Secretory Pathway (IISP) Family [Phytophthora infestans T30-4] >ETI38333.1 protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica P1569] >ETK78527.1 protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica] >ETL31953.1 protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica] >ETL85183.1 protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica] >ETM38347.1 protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica] >ETN19712.1 protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica INRA-310] >ETO67102.1 protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica P1976] >ETP08214.1 protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica CJ01A1] >ETP36266.1 protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica P10297] >KUF90595.1 transport protein Sec61 subunit gamma protein [Phytophthora nicotianae] >KUF99008.1 UPF0554 protein C2orf43 [Phytophthora nicotianae])

HSP 1 Score: 115.2 bits (287), Expect = 8.500e-23
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0 
Query:    1 MSDVNAHIIQPLKKFAKDSTHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 70
            MSDVNA + QPL +F K+S HL+KKC KPDRKEFARIA ATSVGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct:    1 MSDVNALVFQPLNQFFKNSLHLIKKCNKPDRKEFARIAGATSVGFLMMGFIGFFVKLVHIPINNILVGG 69
[Close]
BLAST of NO01G02330 vs. NCBI_GenBank
Match: XP_009036574.1 (hypothetical protein AURANDRAFT_25829 [Aureococcus anophagefferens] >EGB08571.1 hypothetical protein AURANDRAFT_25829 [Aureococcus anophagefferens])

HSP 1 Score: 113.6 bits (283), Expect = 2.500e-22
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0 
Query:    1 MSDVNAHIIQPLKKFAKDSTHLVKKCTKPDRKEFARIAYATSVGFLIMG----FIGFFVKLIHIPINNILL 68
            MSDVNA I+QPLK+F KDS HLVKKCTKPDRKEF RIA+AT VGFLIMG    F+GFFVKLIHIPINNIL+
Sbjct:    1 MSDVNAVIVQPLKQFVKDSVHLVKKCTKPDRKEFTRIAWATGVGFLIMGAPPRFVGFFVKLIHIPINNILM 71
The following BLAST results are available for this feature:
BLAST of NO01G02330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29108.13.200e-3098.57transport protein sec61 subunit gamma [Nannochloro... [more]
XP_008872507.11.200e-2484.06protein transporter Sec61 subunit gamma [Aphanomyc... [more]
OQS01245.12.700e-2484.06Type II (General) Secretory Pathway (IISP) Family ... [more]
OQS06499.12.700e-2484.06Type II (General) Secretory Pathway (IISP) Family ... [more]
XP_008613126.14.500e-2482.61protein translocase SEC61 complex gamma subunit [S... [more]
GAX98386.12.900e-2381.16protein transporter Sec61 subunit gamma [Pythium i... [more]
CBN73851.16.500e-2376.81conserved unknown protein [Ectocarpus siliculosus][more]
XP_024585145.16.500e-2378.26protein translocase sec61 complex gamma archaeal a... [more]
XP_002896502.18.500e-2379.71Type II (General) Secretory Pathway (IISP) Family ... [more]
XP_009036574.12.500e-2280.28hypothetical protein AURANDRAFT_25829 [Aureococcus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL002nonsL002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR086ngnoR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008076NSK008076Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02330.1NO01G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576589gene_221Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g90gene1439Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02330.1NO01G02330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02330 ID=NO01G02330|Name=NO01G02330|organism=Nannochloropsis oceanica|type=gene|length=323bp
ATGTCCGACGTGAACGCCCACATCATCCAGCCCCTGAAGAAATTCGCGAA
GGATTCCACACACCTCGTCAAGAAGTGCACCAAGCCGGACCGAAAAGgta
cacccaacgtttgcaaggccgtcgggttctttacacgtcctcgctcgcca
tgcctttcttctcatcttttatccaaactttcatattacgtcctaaattt
gttacagAGTTTGCCCGGATAGCTTATGCCACGAGCGTGGGGTTCCTCAT
CATGGGCTTTATCGGCTTCTTCGTCAAGCTCATCCACATTCCGATCAACA
ACATTTTGCTGGGCGGCATCTAG
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protein sequence of NO01G02330.1

>NO01G02330.1-protein ID=NO01G02330.1-protein|Name=NO01G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MSDVNAHIIQPLKKFAKDSTHLVKKCTKPDRKEFARIAYATSVGFLIMGF
IGFFVKLIHIPINNILLGGI*
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Synonyms
Publications