NO01G02330.1, NO01G02330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02330.1
Unique NameNO01G02330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length213
Alignment locationchr1:603755..604077 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:603755..604077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02330.1 vs.
Match: EWM29108.1 (transport protein sec61 subunit gamma [Nannochloropsis gaditana])

HSP 1 Score: 139.8 bits (351), Expect = 3.200e-30
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0 
Query:    1 MSDVNAHIIQPLKKFAKDSTHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGGI 71
            MSDVNAHIIQPLKKFAKDS+HLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGGI
Sbjct:   24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGGI 93
The following BLAST results are available for this feature:
BLAST of NO01G02330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29108.13.200e-3098.57transport protein sec61 subunit gamma [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02330NO01G02330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02330.1NO01G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02330.1.cds1NO01G02330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02330.1.cds2NO01G02330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02330.1 ID=NO01G02330.1|Name=NO01G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=213bp
ATGTCCGACGTGAACGCCCACATCATCCAGCCCCTGAAGAAATTCGCGAA
GGATTCCACACACCTCGTCAAGAAGTGCACCAAGCCGGACCGAAAAGAGT
TTGCCCGGATAGCTTATGCCACGAGCGTGGGGTTCCTCATCATGGGCTTT
ATCGGCTTCTTCGTCAAGCTCATCCACATTCCGATCAACAACATTTTGCT
GGGCGGCATCTAG
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protein sequence of NO01G02330.1

>NO01G02330.1-protein ID=NO01G02330.1-protein|Name=NO01G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MSDVNAHIIQPLKKFAKDSTHLVKKCTKPDRKEFARIAYATSVGFLIMGF
IGFFVKLIHIPINNILLGGI*
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mRNA from alignment at chr1:603755..604077+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02330.1 ID=NO01G02330.1|Name=NO01G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=323bp|location=Sequence derived from alignment at chr1:603755..604077+ (Nannochloropsis oceanica)
ATGTCCGACGTGAACGCCCACATCATCCAGCCCCTGAAGAAATTCGCGAA
GGATTCCACACACCTCGTCAAGAAGTGCACCAAGCCGGACCGAAAAGGTA
CACCCAACGTTTGCAAGGCCGTCGGGTTCTTTACACGTCCTCGCTCGCCA
TGCCTTTCTTCTCATCTTTTATCCAAACTTTCATATTACGTCCTAAATTT
GTTACAGAGTTTGCCCGGATAGCTTATGCCACGAGCGTGGGGTTCCTCAT
CATGGGCTTTATCGGCTTCTTCGTCAAGCTCATCCACATTCCGATCAACA
ACATTTTGCTGGGCGGCATCTAG
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Coding sequence (CDS) from alignment at chr1:603755..604077+

>NO01G02330.1 ID=NO01G02330.1|Name=NO01G02330.1|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at chr1:603755..604077+ (Nannochloropsis oceanica)
ATGTCCGACGTGAACGCCCACATCATCCAGCCCCTGAAGAAATTCGCGAA
GGATTCCACACACCTCGTCAAGAAGTGCACCAAGCCGGACCGAAAAGAGT
TTGCCCGGATAGCTTATGCCACGAGCGTGGGGTTCCTCATCATGGGCTTT
ATCGGCTTCTTCGTCAAGCTCATCCACATTCCGATCAACAACATTTTGCT
GGGCGGCATCTAG
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Synonyms
Publications