NO01G02140, NO01G02140 (gene) Nannochloropsis oceanica

Overview
NameNO01G02140
Unique NameNO01G02140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1801
Alignment locationchr1:543428..545228 +

Link to JBrowse

Properties
Property NameValue
DescriptionC2 calcium-dependent membrane targeting
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:543428..545228 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO01G02140 vs. NCBI_GenBank
Match: EWM29183.1 (C2 calcium-dependent membrane targeting [Nannochloropsis gaditana])

HSP 1 Score: 365.5 bits (937), Expect = 1.500e-97
Identity = 174/242 (71.90%), Postives = 202/242 (83.47%), Query Frame = 0 
Query:    7 RRPALVLSGMATLLLALSTEAGNPKNRRRMQFDSNADILEDVEDWKAIVDPSTCPLKQWSVALKLTAVTLADGLPCFDTEGKVSPYVQFKMSGKTIQSWTEENQQFPVFLENFQLGCHDISEPLEVSVVNSATGRTCMSTTVQHWSYGRQGVFTETQPALSDEARSGGFGLIKDTQQSYSYVLRDGRSSIDLTINAFPGPQEVASKWNTHTAGDTFGIVFGMLLFTGCIGYFVWKIRNSHSG 249
            RR AL LSG+A LL  L+ +AGNP++ RR+QFDS A  L+D+EDWK +VDP TCP+KQ+SVAL LTAVTLADGL CF  EG VSP+VQF+M GKTI+S TEE+QQFPV+LE FQLGC DI EPL +SVVNS TG+TC S TV+HWSYGR GV+T+TQPALS+ ARSGG GLIKDTQQSYSYVL+ G S++DLTINA PGPQE ASKWN HT  D FGIVFGM++F G +GYFVWKIRNS SG
Sbjct:    3 RRIALGLSGVAVLLSVLNCDAGNPRS-RRVQFDSKAQTLQDIEDWKEVVDPDTCPVKQYSVALTLTAVTLADGLSCFSAEGGVSPFVQFEMGGKTIRSRTEEDQQFPVYLETFQLGCQDIQEPLVISVVNSQTGQTCFSNTVRHWSYGRTGVYTDTQPALSENARSGGTGLIKDTQQSYSYVLKTGPSTMDLTINALPGPQETASKWNVHTPADIFGIVFGMMIFVGVVGYFVWKIRNSASG 243
The following BLAST results are available for this feature:
BLAST of NO01G02140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29183.11.500e-9771.90C2 calcium-dependent membrane targeting [Nannochlo... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008127NSK008127Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02140.1NO01G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576520gene_199Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g38gene1477Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02140.1NO01G02140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02140 ID=NO01G02140|Name=NO01G02140|organism=Nannochloropsis oceanica|type=gene|length=1801bp
ACAGGGCGCCAAACACCCAGGACGAAGGAAGCTAAAGGCTCTATACCAAA
CCAGTATCCACGCATCCCAGATATCCCTCCAAGTCGTAGTTCTGTACAAC
ACAAGTACCTGACCACCATGCCTGTTCATCAACAACGGCGGCCTGCTCTC
GTCTTGTCAGGGATGGCAACATTGCTCTTAGCGTTAAGCACAGAGGCAGG
CAATCCCAAGgtgagtccatgtaattgcatcgacgtcttaaccacactcc
ttgaagtctgacgcgcttatgtcttgattgccatatgtctcttgccttgg
taagggttaccattactattctgtcaattcccatgtccttccctccctcc
cttgttgatcgaaattttcacaacgttctgccatattttccacctctcta
tgtatctactggtcccatatatgctgttatctcttgacgtgtattgcttt
tctcactcatttttgtcctctgctccgctgccaaaatattccttccctta
gAACCGACGCCGCATGCAATTTGATAGCAACGCCGATATCCTGGAGGACG
TGGAGGATTGGAAGGCTATTGTGGACCCCTCCACCTGCCCTTTGAAGCAA
TGGTCGGTCGCCTTGAAGCTGACTGCCGTGACTCTGGCCGATGGCCTCCC
TTGCTTTGATACCGAAGGTAAAGTTAGCCCATATGTGCAATTCAAGATGA
GCGGAAAGACTATCCAGAGCTGGACAGAGGAGAATCAGCAGTTCCCTGTC
TTTTTGGAAAATTTTCAGTTGGGGTGTCACGATATTTCTGAGCCGCTCGA
AGTCTCGGTTGTGAACTCTGCGACGGGACGGACGTGCATGTCTACAACGG
TGCAGCATTGGTCGTATGGCCGGCAGGGCGTGTTCACGGAGACCCAACCG
GCGTTGAGTGACGAGGCGCGTAGTGGGGGTTTTGGATTGATAAAGGACAC
ACAGCAGAGCTACTCGTACGTGCTGAGGGATGGCAGGAGCTCGATTGACT
TGACCATCAACGCTTTCCCTGGCCCGCAGGAAGTGGCCTCGAAATGGAAC
ACCCATACGGCAGGGGACACATTTGGGATCGTCTTCGGCATGCTATTATT
CACAGGTTGCATCGGATACTTTGTCTGGAAGATCCGCAACTCCCATTCAG
GGCCCGCTCCACCTGTAAATGATGCTGCTGCCCTTCATGGTGCTGCTCCT
TCTGCGCCAGCTGCTGGGATGAGCCAGAAGGCAGGTGAATCGGCTGCTAA
TTTGGCCGCAGCATAGAACTTAGTCAATTGTGAGTGGTAAATGAGAAGAA
AAGAAAGGATGCGAGGAGGGACACCAGTGGCGTGGAGTATCTCCATTCAT
AGGTATGAAAAAAGAAAAAATCAATAAGTAAAGAGATTACGGAGGAGAGA
CAACAAAATAGAAGCTGGAGCTGGAGTGATAAATGCGTGTATGACTAGCC
GCGAATATCTTGTGTACATGAGGTAGGAAGGAGGAGGGCGGGAAGGAGGA
GGAAGAGGAGACAGAAAACACGAACGAAAGCAAACAATCAAAAAGGGAAT
GGAAAATCGTAGAAAATCTCGGAAGAAAAAGGAAGGGTAGCAAATGTGGG
CATGTGTATGTGTTCAATACGTCTGCGAGTGATTGAGGGGCCGACATTAG
TCCGAATTGTTGGTAATTAGAAATCAAATGAAGAAGAGCGCGCGGAGAGA
CGTATGAATATTCAACCCGTGTTGAGGGAAAGGAGAAGAAGAAGATGAAA
GGAAAGATGTAAGGAAGTGGAAGTGTGTTGAAACGTGCAAAGAAAAAGAG
T
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protein sequence of NO01G02140.1

>NO01G02140.1-protein ID=NO01G02140.1-protein|Name=NO01G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MPVHQQRRPALVLSGMATLLLALSTEAGNPKNRRRMQFDSNADILEDVED
WKAIVDPSTCPLKQWSVALKLTAVTLADGLPCFDTEGKVSPYVQFKMSGK
TIQSWTEENQQFPVFLENFQLGCHDISEPLEVSVVNSATGRTCMSTTVQH
WSYGRQGVFTETQPALSDEARSGGFGLIKDTQQSYSYVLRDGRSSIDLTI
NAFPGPQEVASKWNTHTAGDTFGIVFGMLLFTGCIGYFVWKIRNSHSGPA
PPVNDAAALHGAAPSAPAAGMSQKAGESAANLAAA*
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Synonyms
Publications