NO01G02140.1, NO01G02140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02140.1
Unique NameNO01G02140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1510
Alignment locationchr1:543428..545228 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:543428..545228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02140.1 vs.
Match: EWM29183.1 (C2 calcium-dependent membrane targeting [Nannochloropsis gaditana])

HSP 1 Score: 370.9 bits (951), Expect = 3.500e-99
Identity = 183/263 (69.58%), Postives = 211/263 (80.23%), Query Frame = 0 
Query:    7 RRPALVLSGMATLLLALSTEAGNPKNRRRMQFDSNADILEDVEDWKAIVDPSTCPLKQWSVALKLTAVTLADGLPCFDTEGKVSPYVQFKMSGKTIQSWTEENQQFPVFLENFQLGCHDISEPLEVSVVNSATGRTCMSTTVQHWSYGRQGVFTETQPALSDEARSGGFGLIKDTQQSYSYVLRDGRSSIDLTINAFPGPQEVASKWNTHTAGDTFGIVFGMLLFTGCIGYFVWKIRNSHSGPAPPVNDAAALHGAAPSAPAA 270
            RR AL LSG+A LL  L+ +AGNP++RR +QFDS A  L+D+EDWK +VDP TCP+KQ+SVAL LTAVTLADGL CF  EG VSP+VQF+M GKTI+S TEE+QQFPV+LE FQLGC DI EPL +SVVNS TG+TC S TV+HWSYGR GV+T+TQPALS+ ARSGG GLIKDTQQSYSYVL+ G S++DLTINA PGPQE ASKWN HT  D FGIVFGM++F G +GYFVWKIRNS SGPAP          A PSAP A
Sbjct:    3 RRIALGLSGVAVLLSVLNCDAGNPRSRR-VQFDSKAQTLQDIEDWKEVVDPDTCPVKQYSVALTLTAVTLADGLSCFSAEGGVSPFVQFEMGGKTIRSRTEEDQQFPVYLETFQLGCQDIQEPLVISVVNSQTGQTCFSNTVRHWSYGRTGVYTDTQPALSENARSGGTGLIKDTQQSYSYVLKTGPSTMDLTINALPGPQETASKWNVHTPADIFGIVFGMMIFVGVVGYFVWKIRNSASGPAPA--------PAPPSAPEA 256
The following BLAST results are available for this feature:
BLAST of NO01G02140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29183.13.500e-9969.58C2 calcium-dependent membrane targeting [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02140NO01G02140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02140.1NO01G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02140.1.cds1NO01G02140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02140.1.cds2NO01G02140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02140.1 ID=NO01G02140.1|Name=NO01G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1510bp
ACAGGGCGCCAAACACCCAGGACGAAGGAAGCTAAAGGCTCTATACCAAA
CCAGTATCCACGCATCCCAGATATCCCTCCAAGTCGTAGTTCTGTACAAC
ACAAGTACCTGACCACCATGCCTGTTCATCAACAACGGCGGCCTGCTCTC
GTCTTGTCAGGGATGGCAACATTGCTCTTAGCGTTAAGCACAGAGGCAGG
CAATCCCAAGAACCGACGCCGCATGCAATTTGATAGCAACGCCGATATCC
TGGAGGACGTGGAGGATTGGAAGGCTATTGTGGACCCCTCCACCTGCCCT
TTGAAGCAATGGTCGGTCGCCTTGAAGCTGACTGCCGTGACTCTGGCCGA
TGGCCTCCCTTGCTTTGATACCGAAGGTAAAGTTAGCCCATATGTGCAAT
TCAAGATGAGCGGAAAGACTATCCAGAGCTGGACAGAGGAGAATCAGCAG
TTCCCTGTCTTTTTGGAAAATTTTCAGTTGGGGTGTCACGATATTTCTGA
GCCGCTCGAAGTCTCGGTTGTGAACTCTGCGACGGGACGGACGTGCATGT
CTACAACGGTGCAGCATTGGTCGTATGGCCGGCAGGGCGTGTTCACGGAG
ACCCAACCGGCGTTGAGTGACGAGGCGCGTAGTGGGGGTTTTGGATTGAT
AAAGGACACACAGCAGAGCTACTCGTACGTGCTGAGGGATGGCAGGAGCT
CGATTGACTTGACCATCAACGCTTTCCCTGGCCCGCAGGAAGTGGCCTCG
AAATGGAACACCCATACGGCAGGGGACACATTTGGGATCGTCTTCGGCAT
GCTATTATTCACAGGTTGCATCGGATACTTTGTCTGGAAGATCCGCAACT
CCCATTCAGGGCCCGCTCCACCTGTAAATGATGCTGCTGCCCTTCATGGT
GCTGCTCCTTCTGCGCCAGCTGCTGGGATGAGCCAGAAGGCAGGTGAATC
GGCTGCTAATTTGGCCGCAGCATAGAACTTAGTCAATTGTGAGTGGTAAA
TGAGAAGAAAAGAAAGGATGCGAGGAGGGACACCAGTGGCGTGGAGTATC
TCCATTCATAGGTATGAAAAAAGAAAAAATCAATAAGTAAAGAGATTACG
GAGGAGAGACAACAAAATAGAAGCTGGAGCTGGAGTGATAAATGCGTGTA
TGACTAGCCGCGAATATCTTGTGTACATGAGGTAGGAAGGAGGAGGGCGG
GAAGGAGGAGGAAGAGGAGACAGAAAACACGAACGAAAGCAAACAATCAA
AAAGGGAATGGAAAATCGTAGAAAATCTCGGAAGAAAAAGGAAGGGTAGC
AAATGTGGGCATGTGTATGTGTTCAATACGTCTGCGAGTGATTGAGGGGC
CGACATTAGTCCGAATTGTTGGTAATTAGAAATCAAATGAAGAAGAGCGC
GCGGAGAGACGTATGAATATTCAACCCGTGTTGAGGGAAAGGAGAAGAAG
AAGATGAAAGGAAAGATGTAAGGAAGTGGAAGTGTGTTGAAACGTGCAAA
GAAAAAGAGT
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protein sequence of NO01G02140.1

>NO01G02140.1-protein ID=NO01G02140.1-protein|Name=NO01G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MPVHQQRRPALVLSGMATLLLALSTEAGNPKNRRRMQFDSNADILEDVED
WKAIVDPSTCPLKQWSVALKLTAVTLADGLPCFDTEGKVSPYVQFKMSGK
TIQSWTEENQQFPVFLENFQLGCHDISEPLEVSVVNSATGRTCMSTTVQH
WSYGRQGVFTETQPALSDEARSGGFGLIKDTQQSYSYVLRDGRSSIDLTI
NAFPGPQEVASKWNTHTAGDTFGIVFGMLLFTGCIGYFVWKIRNSHSGPA
PPVNDAAALHGAAPSAPAAGMSQKAGESAANLAAA*
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mRNA from alignment at chr1:543428..545228+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02140.1 ID=NO01G02140.1|Name=NO01G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1801bp|location=Sequence derived from alignment at chr1:543428..545228+ (Nannochloropsis oceanica)
ACAGGGCGCCAAACACCCAGGACGAAGGAAGCTAAAGGCTCTATACCAAA
CCAGTATCCACGCATCCCAGATATCCCTCCAAGTCGTAGTTCTGTACAAC
ACAAGTACCTGACCACCATGCCTGTTCATCAACAACGGCGGCCTGCTCTC
GTCTTGTCAGGGATGGCAACATTGCTCTTAGCGTTAAGCACAGAGGCAGG
CAATCCCAAGGTGAGTCCATGTAATTGCATCGACGTCTTAACCACACTCC
TTGAAGTCTGACGCGCTTATGTCTTGATTGCCATATGTCTCTTGCCTTGG
TAAGGGTTACCATTACTATTCTGTCAATTCCCATGTCCTTCCCTCCCTCC
CTTGTTGATCGAAATTTTCACAACGTTCTGCCATATTTTCCACCTCTCTA
TGTATCTACTGGTCCCATATATGCTGTTATCTCTTGACGTGTATTGCTTT
TCTCACTCATTTTTGTCCTCTGCTCCGCTGCCAAAATATTCCTTCCCTTA
GAACCGACGCCGCATGCAATTTGATAGCAACGCCGATATCCTGGAGGACG
TGGAGGATTGGAAGGCTATTGTGGACCCCTCCACCTGCCCTTTGAAGCAA
TGGTCGGTCGCCTTGAAGCTGACTGCCGTGACTCTGGCCGATGGCCTCCC
TTGCTTTGATACCGAAGGTAAAGTTAGCCCATATGTGCAATTCAAGATGA
GCGGAAAGACTATCCAGAGCTGGACAGAGGAGAATCAGCAGTTCCCTGTC
TTTTTGGAAAATTTTCAGTTGGGGTGTCACGATATTTCTGAGCCGCTCGA
AGTCTCGGTTGTGAACTCTGCGACGGGACGGACGTGCATGTCTACAACGG
TGCAGCATTGGTCGTATGGCCGGCAGGGCGTGTTCACGGAGACCCAACCG
GCGTTGAGTGACGAGGCGCGTAGTGGGGGTTTTGGATTGATAAAGGACAC
ACAGCAGAGCTACTCGTACGTGCTGAGGGATGGCAGGAGCTCGATTGACT
TGACCATCAACGCTTTCCCTGGCCCGCAGGAAGTGGCCTCGAAATGGAAC
ACCCATACGGCAGGGGACACATTTGGGATCGTCTTCGGCATGCTATTATT
CACAGGTTGCATCGGATACTTTGTCTGGAAGATCCGCAACTCCCATTCAG
GGCCCGCTCCACCTGTAAATGATGCTGCTGCCCTTCATGGTGCTGCTCCT
TCTGCGCCAGCTGCTGGGATGAGCCAGAAGGCAGGTGAATCGGCTGCTAA
TTTGGCCGCAGCATAGAACTTAGTCAATTGTGAGTGGTAAATGAGAAGAA
AAGAAAGGATGCGAGGAGGGACACCAGTGGCGTGGAGTATCTCCATTCAT
AGGTATGAAAAAAGAAAAAATCAATAAGTAAAGAGATTACGGAGGAGAGA
CAACAAAATAGAAGCTGGAGCTGGAGTGATAAATGCGTGTATGACTAGCC
GCGAATATCTTGTGTACATGAGGTAGGAAGGAGGAGGGCGGGAAGGAGGA
GGAAGAGGAGACAGAAAACACGAACGAAAGCAAACAATCAAAAAGGGAAT
GGAAAATCGTAGAAAATCTCGGAAGAAAAAGGAAGGGTAGCAAATGTGGG
CATGTGTATGTGTTCAATACGTCTGCGAGTGATTGAGGGGCCGACATTAG
TCCGAATTGTTGGTAATTAGAAATCAAATGAAGAAGAGCGCGCGGAGAGA
CGTATGAATATTCAACCCGTGTTGAGGGAAAGGAGAAGAAGAAGATGAAA
GGAAAGATGTAAGGAAGTGGAAGTGTGTTGAAACGTGCAAAGAAAAAGAG
T
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Coding sequence (CDS) from alignment at chr1:543428..545228+

>NO01G02140.1 ID=NO01G02140.1|Name=NO01G02140.1|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at chr1:543428..545228+ (Nannochloropsis oceanica)
ATGCCTGTTCATCAACAACGGCGGCCTGCTCTCGTCTTGTCAGGGATGGC
AACATTGCTCTTAGCGTTAAGCACAGAGGCAGGCAATCCCAAGAACCGAC
GCCGCATGCAATTTGATAGCAACGCCGATATCCTGGAGGACGTGGAGGAT
TGGAAGGCTATTGTGGACCCCTCCACCTGCCCTTTGAAGCAATGGTCGGT
CGCCTTGAAGCTGACTGCCGTGACTCTGGCCGATGGCCTCCCTTGCTTTG
ATACCGAAGGTAAAGTTAGCCCATATGTGCAATTCAAGATGAGCGGAAAG
ACTATCCAGAGCTGGACAGAGGAGAATCAGCAGTTCCCTGTCTTTTTGGA
AAATTTTCAGTTGGGGTGTCACGATATTTCTGAGCCGCTCGAAGTCTCGG
TTGTGAACTCTGCGACGGGACGGACGTGCATGTCTACAACGGTGCAGCAT
TGGTCGTATGGCCGGCAGGGCGTGTTCACGGAGACCCAACCGGCGTTGAG
TGACGAGGCGCGTAGTGGGGGTTTTGGATTGATAAAGGACACACAGCAGA
GCTACTCGTACGTGCTGAGGGATGGCAGGAGCTCGATTGACTTGACCATC
AACGCTTTCCCTGGCCCGCAGGAAGTGGCCTCGAAATGGAACACCCATAC
GGCAGGGGACACATTTGGGATCGTCTTCGGCATGCTATTATTCACAGGTT
GCATCGGATACTTTGTCTGGAAGATCCGCAACTCCCATTCAGGGCCCGCT
CCACCTGTAAATGATGCTGCTGCCCTTCATGGTGCTGCTCCTTCTGCGCC
AGCTGCTGGGATGAGCCAGAAGGCAGGTGAATCGGCTGCTAATTTGGCCG
CAGCATAG
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Synonyms
Publications