NO01G02130, NO01G02130 (gene) Nannochloropsis oceanica

Overview
NameNO01G02130
Unique NameNO01G02130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1550
Alignment locationchr1:541322..542871 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:541322..542871 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G02130 vs. NCBI_GenBank
Match: EWM29188.1 (hypothetical protein Naga_100007g37 [Nannochloropsis gaditana])

HSP 1 Score: 95.9 bits (237), Expect = 2.900e-16
Identity = 58/158 (36.71%), Postives = 90/158 (56.96%), Query Frame = 0 
Query:   27 AGPDKEMMEVKQLLKQALGGAGILNHARALLVAGVHLVTDRFGDGQRPEASLTHLRLLHPNQRAMAAAETEEGRLALGLVADLLDSLGLRHSLSIFLPEANLDDGTAVGEGQPXXXXXXXPPSHWRSLQQAVVETLELDSDTGSEDPLLLQFMRRQME 185
            A    +++EVK LL+QALG AGIL++  ++L A  ++  D     Q  EAS + LRL+HPNQ  ++  E +EGRL L L A+LL S+ ++ +LS+F  EA+L     +   +          S + S+++   + L LD+   +  PLLLQ MRR  +
Sbjct:   59 ANTSVDVIEVKGLLRQALGQAGILDYVMSMLRASAYVAIDGTRPAQSAEASASDLRLIHPNQDLLSLREMDEGRLLLNLTAELLKSMNMQQTLSVFEREAHLHPNGPILSEEDEITAEKERLSWFSSVREEGAQVLGLDAH--ATGPLLLQLMRRHQQ 214
The following BLAST results are available for this feature:
BLAST of NO01G02130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29188.12.900e-1636.71hypothetical protein Naga_100007g37 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008128NSK008128Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576513gene_198Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g37gene1478Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02130.1NO01G02130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G02130.2NO01G02130.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G02130.3NO01G02130.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G02130.4NO01G02130.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02130.1NO01G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G02130.2NO01G02130.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G02130.3NO01G02130.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G02130.4NO01G02130.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02130 ID=NO01G02130|Name=NO01G02130|organism=Nannochloropsis oceanica|type=gene|length=1550bp
CAGACTAGCCAGCGCTGGGCACACGTTCCGAGACGAGTGACCATGACAAG
CACTTCGCCTCAGAAGTGGGCCGAGGAGGACATGCCCCCGCCGCAGCACC
AGCAGCAGCAGCAGACCGGTGCGGGGCCGGACAAGGAAATGATGGAGGTC
AAACAGCTTTTAAAGCAGGCATTGGGAGGGGCGGGCATCCTAAACCACGC
TAGGgtacgttttcgtcaagcaatgcaattctccctgactttcgtcgccc
atcacgagtacgctaactctaggcacccccacccctcacgccaaacagGC
GTTGCTTGTCGCCGGGGTCCATTTGGTCACGGATAGGTTTGGTGACGGGC
AGCGACCCGAGGCCAGCCTCACGCATCTACGGCTTCTACACCCCAATCAA
CGCGCGATGGCCGCAGCAGAAACAGAAGAAGGGCGACTCGCATTAGGCTT
GGTCGCCGACTTGCTTGATAGTTTAGGTTTAAGGCACAGCTTGTCCATCT
TTCTACCGGAAGCTAATCTCGACGATGGTACAGCAGTGGGGGAGGGGCAG
CCGCAGCAGCAGCAACAGCAGCATCCGCCTTCGCATTGGAGGTCGCTGCA
GCAAGCAGTCGTAGAAACGCTCGAGTTGGATTCTGATACTGGTTCCGAAG
ATCCTCTCCTCTTACAATTCATGCGCCGCCAGATGGAAAAGAAGCGATTG
AGGAGTGAGTCGGAGGCGAAGGAGGAGGGAGAAGAGGGGGATGGAAAAGG
AAGGAAGGAGGAGGGAGAAGAAGAAGCGATGCTGGCACCTGGGGGACAAG
AGCAGGCTTTGGCCGCCAGGCAACAAATGGTAGAGAAAAACGGCGTCGAA
GAAATAACTGGAGCTGTGGAGGAGGCAATTGCGTATGAAGAGGAGGAAGA
GGAGGGTAGAAGCAGGTGTGTCTTGGGTGAGGGAAACTGTAGGGGAATGG
TTGGAGGCAATGCATCTACTTCAATTGAGTCTTATGTAAAATGTAACGAT
GCAAACACCGCGCACATTGACACACCAGGAATGGCGGGCAGCATGAACAA
GAAGAAGGGGATGGTAGTATTTCCTCGGCTGTAAACAAAAGAACCGGCGA
GGGGAGCGGCAGCAGCAGCGATGATGACAACGATGACGAGGTGGAACTGA
GGCTCTCCATGGACAAAgtacgtacttccaaaaatcacgaaagatttcaa
agatcccaaattgtccatatttgtacttttcactcttggacatcactcga
acagGTGGCCATTCAGGCCGAGGCAGAAACAATACAAGAGCAAGAGGAGG
AGGAGGACGTGGAGGATGGAGTCCGGGATGTCGCCTTAACCCAGGTCTTC
CCATCATTAGTACAACAAGAAGACAGTGTAGCGGATGATGAGGAAGTATT
AAAAGGGTAGTCTGTGTCTGAGTGGATTCGGGATGTGGGTGTAGTAAAAG
AGACCAAGAATAATGAAATCGACTTGCTAAGAAGTCTGGTAAATGTATTT
TACTTGATTGCTGTTAGGAAAAACCTTAATGTATTTTACTTGATTGCTGT
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protein sequence of NO01G02130.1

>NO01G02130.1-protein ID=NO01G02130.1-protein|Name=NO01G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MTSTSPQKWAEEDMPPPQHQQQQQTGAGPDKEMMEVKQLLKQALGGAGIL
NHARALLVAGVHLVTDRFGDGQRPEASLTHLRLLHPNQRAMAAAETEEGR
LALGLVADLLDSLGLRHSLSIFLPEANLDDGTAVGEGQPQQQQQQHPPSH
WRSLQQAVVETLELDSDTGSEDPLLLQFMRRQMEKKRLRSESEAKEEGEE
GDGKGRKEEGEEEAMLAPGGQEQALAARQQMVEKNGVEEITGAVEEAIAY
EEEEEEGRSRNGGQHEQEEGDGSISSAVNKRTGEGSGSSSDDDNDDEVEL
RLSMDKVAIQAEAETIQEQEEEEDVEDGVRDVALTQVFPSLVQQEDSVAD
DEEVLKG*
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protein sequence of NO01G02130.2

>NO01G02130.2-protein ID=NO01G02130.2-protein|Name=NO01G02130.2|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MTSTSPQKWAEEDMPPPQHQQQQQTGAGPDKEMMEVKQLLKQALGGAGIL
NHARALLVAGVHLVTDRFGDGQRPEASLTHLRLLHPNQRAMAAAETEEGR
LALGLVADLLDSLGLRHSLSIFLPEANLDDGTAVGEGQPQQQQQQHPPSH
WRSLQQAVVETLELDSDTGSEDPLLLQFMRRQMEKKRLRSESEAKEEGEE
GDGKGRKEEGEEEAMLAPGGQEQALAARQQMVEKNGVEEITGAVEEAIAY
EEEEEEGRSRNGGQHEQEEGDGSISSAVNKRTGEGSGSSSDDDNDDEVEL
RLSMDKVRTSKNHERFQRSQIVHICTFHSWTSLEQVAIQAEAETIQEQEE
EEDVEDGVRDVALTQVFPSLVQQEDSVADDEEVLKG*
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protein sequence of NO01G02130.3

>NO01G02130.3-protein ID=NO01G02130.3-protein|Name=NO01G02130.3|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MTSTSPQKWAEEDMPPPQHQQQQQTGAGPDKEMMEVKQLLKQALGGAGIL
NHARALLVAGVHLVTDRFGDGQRPEASLTHLRLLHPNQRAMAAAETEEGR
LALGLVADLLDSLGLRHSLSIFLPEANLDDGTAVGEGQPQQQQQQHPPSH
WRSLQQAVVETLELDSDTGSEDPLLLQFMRRQMEKKRLRSESEAKEEGEE
GDGKGRKEEGEEEAMLAPGGQEQALAARQQMVEKNGVEEITGAVEEAIAY
EEEEEEGRSRCVLGEGNCRGMVGGNASTSIESYVKCNDANTAHIDTPGMA
GSMNKKKGMVVFPRL*
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protein sequence of NO01G02130.4

>NO01G02130.4-protein ID=NO01G02130.4-protein|Name=NO01G02130.4|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MTSTSPQKWAEEDMPPPQHQQQQQTGAGPDKEMMEVKQLLKQALGGAGIL
NHARALLVAGVHLVTDRFGDGQRPEASLTHLRLLHPNQRAMAAAETEEGR
LALGLVADLLDSLGLRHSLSIFLPEANLDDGTAVGEGQPQQQQQQHPPSH
WRSLQQAVVETLELDSDTGSEDPLLLQFMRRQMEKKRLRSESEAKEEGEE
GDGKGRKEEGEEEAMLAPGGQEQALAARQQMVEKNGVEEITGAVEEAIAY
EEEEEEGRSRCVLGEGNCRGMVGGNASTSIESYVKCNDANTAHIDTPGMA
GSMNKKKGMVVFPRL*
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Synonyms
Publications