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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:541322..542871 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02130.3 vs.
Match: EWM29188.1 (hypothetical protein Naga_100007g37 [Nannochloropsis gaditana]) HSP 1 Score: 92.0 bits (227), Expect = 3.400e-15 Identity = 89/286 (31.12%), Postives = 139/286 (48.60%), Query Frame = 0
Query: 13 DMPPPQHQQQQQTGAGPDKEMMEVKQLLKQALGGAGILNHARALLVAGVHLVTDRFGDGQRPEASLTHLRLLHPNQRAMAAAETEEGRLALGLVADLLDSLGLRHSLSIFLPEANLDDGTAVGEGQPQQQQQQHPPSHWRSLQQAVVETLELDSDTGSEDPLLLQFMRRQMEKKRLRSESEAKEEGEEGDGKGRKEEGEEEAMLAPGGQEQALAARQQMVEKNGVEEITGAVEEAIAYEEEEEEGRSRCVLGEGNCRGMVGGNASTSIESYVKCNDANTAHIDTPG 299
D+P + Q + A +++EVK LL+QALG AGIL++ ++L A ++ D Q EAS + LRL+HPNQ ++ E +EGRL L L A+LL S+ ++ +LS+F EA+L + + + ++ S + S+++ + L LD+ + PLLLQ MRR + R EE E DG ++ + A A +E NG E + +E + E E R+RC + R +A S S K NDA + +T G
Sbjct: 45 DVPSDEPQDAARLKANTSVDVIEVKGLLRQALGQAGILDYVMSMLRASAYVAIDGTRPAQSAEASASDLRLIHPNQDLLSLREMDEGRLLLNLTAELLKSMNMQQTLSVFEREAHLHPNGPILSEEDEITAEKERLSWFSSVREEGAQVLGLDAH--ATGPLLLQLMRRHQQHVVSRLHQGRGEEKEMLDGTVHRDIQQSPAQTAAVERE------------NGGENVNQGADEDTTHAEGEMADRNRC-----SARNEESMSARKSKLS--KSNDARSIGSETLG 309
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02130.3 ID=NO01G02130.3|Name=NO01G02130.3|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp CAGACTAGCCAGCGCTGGGCACACGTTCCGAGACGAGTGACCATGACAAG CACTTCGCCTCAGAAGTGGGCCGAGGAGGACATGCCCCCGCCGCAGCACC AGCAGCAGCAGCAGACCGGTGCGGGGCCGGACAAGGAAATGATGGAGGTC AAACAGCTTTTAAAGCAGGCATTGGGAGGGGCGGGCATCCTAAACCACGC TAGGGCGTTGCTTGTCGCCGGGGTCCATTTGGTCACGGATAGGTTTGGTG ACGGGCAGCGACCCGAGGCCAGCCTCACGCATCTACGGCTTCTACACCCC AATCAACGCGCGATGGCCGCAGCAGAAACAGAAGAAGGGCGACTCGCATT AGGCTTGGTCGCCGACTTGCTTGATAGTTTAGGTTTAAGGCACAGCTTGT CCATCTTTCTACCGGAAGCTAATCTCGACGATGGTACAGCAGTGGGGGAG GGGCAGCCGCAGCAGCAGCAACAGCAGCATCCGCCTTCGCATTGGAGGTC GCTGCAGCAAGCAGTCGTAGAAACGCTCGAGTTGGATTCTGATACTGGTT CCGAAGATCCTCTCCTCTTACAATTCATGCGCCGCCAGATGGAAAAGAAG CGATTGAGGAGTGAGTCGGAGGCGAAGGAGGAGGGAGAAGAGGGGGATGG AAAAGGAAGGAAGGAGGAGGGAGAAGAAGAAGCGATGCTGGCACCTGGGG GACAAGAGCAGGCTTTGGCCGCCAGGCAACAAATGGTAGAGAAAAACGGC GTCGAAGAAATAACTGGAGCTGTGGAGGAGGCAATTGCGTATGAAGAGGA GGAAGAGGAGGGTAGAAGCAGGTGTGTCTTGGGTGAGGGAAACTGTAGGG GAATGGTTGGAGGCAATGCATCTACTTCAATTGAGTCTTATGTAAAATGT AACGATGCAAACACCGCGCACATTGACACACCAGGAATGGCGGGCAGCAT GAACAAGAAGAAGGGGATGGTAGTATTTCCTCGGCTGTAAACAAAAGAAC CGGCGAGGGGAGCGGCAGCAGCAGCGATGATGACAACGATGACGAGGTGG AACTGAGGCTCTCCATGGACAAAGTGGCCATTCAGGCCGAGGCAGAAACA ATACAAGAGCAAGAGGAGGAGGAGGACGTGGAGGATGGAGTCCGGGATGT CGCCTTAACCCAGGTCTTCCCATCATTAGTACAACAAGAAGACAGTGTAG CGGATGATGAGGAAGTATTAAAAGGGTAGTCTGTGTCTGAGTGGATTCGG GATGTGGGTGTAGTAAAAGAGACCAAGAATAATGAAATCGACTTGCTAAG AAGTCTGGTAAATGTATTTTACTTGATTGCTGTTAGGAAAAACCTTAATG TATTTTACTTGATTGCTGT back to topprotein sequence of NO01G02130.3 >NO01G02130.3-protein ID=NO01G02130.3-protein|Name=NO01G02130.3|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp MTSTSPQKWAEEDMPPPQHQQQQQTGAGPDKEMMEVKQLLKQALGGAGIL NHARALLVAGVHLVTDRFGDGQRPEASLTHLRLLHPNQRAMAAAETEEGR LALGLVADLLDSLGLRHSLSIFLPEANLDDGTAVGEGQPQQQQQQHPPSH WRSLQQAVVETLELDSDTGSEDPLLLQFMRRQMEKKRLRSESEAKEEGEE GDGKGRKEEGEEEAMLAPGGQEQALAARQQMVEKNGVEEITGAVEEAIAY EEEEEEGRSRCVLGEGNCRGMVGGNASTSIESYVKCNDANTAHIDTPGMA GSMNKKKGMVVFPRL* back to topmRNA from alignment at chr1:541322..542871+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02130.3 ID=NO01G02130.3|Name=NO01G02130.3|organism=Nannochloropsis oceanica|type=mRNA|length=1550bp|location=Sequence derived from alignment at chr1:541322..542871+ (Nannochloropsis oceanica) CAGACTAGCCAGCGCTGGGCACACGTTCCGAGACGAGTGACCATGACAAG
CACTTCGCCTCAGAAGTGGGCCGAGGAGGACATGCCCCCGCCGCAGCACC
AGCAGCAGCAGCAGACCGGTGCGGGGCCGGACAAGGAAATGATGGAGGTC
AAACAGCTTTTAAAGCAGGCATTGGGAGGGGCGGGCATCCTAAACCACGC
TAGGGTACGTTTTCGTCAAGCAATGCAATTCTCCCTGACTTTCGTCGCCC
ATCACGAGTACGCTAACTCTAGGCACCCCCACCCCTCACGCCAAACAGGC
GTTGCTTGTCGCCGGGGTCCATTTGGTCACGGATAGGTTTGGTGACGGGC
AGCGACCCGAGGCCAGCCTCACGCATCTACGGCTTCTACACCCCAATCAA
CGCGCGATGGCCGCAGCAGAAACAGAAGAAGGGCGACTCGCATTAGGCTT
GGTCGCCGACTTGCTTGATAGTTTAGGTTTAAGGCACAGCTTGTCCATCT
TTCTACCGGAAGCTAATCTCGACGATGGTACAGCAGTGGGGGAGGGGCAG
CCGCAGCAGCAGCAACAGCAGCATCCGCCTTCGCATTGGAGGTCGCTGCA
GCAAGCAGTCGTAGAAACGCTCGAGTTGGATTCTGATACTGGTTCCGAAG
ATCCTCTCCTCTTACAATTCATGCGCCGCCAGATGGAAAAGAAGCGATTG
AGGAGTGAGTCGGAGGCGAAGGAGGAGGGAGAAGAGGGGGATGGAAAAGG
AAGGAAGGAGGAGGGAGAAGAAGAAGCGATGCTGGCACCTGGGGGACAAG
AGCAGGCTTTGGCCGCCAGGCAACAAATGGTAGAGAAAAACGGCGTCGAA
GAAATAACTGGAGCTGTGGAGGAGGCAATTGCGTATGAAGAGGAGGAAGA
GGAGGGTAGAAGCAGGTGTGTCTTGGGTGAGGGAAACTGTAGGGGAATGG
TTGGAGGCAATGCATCTACTTCAATTGAGTCTTATGTAAAATGTAACGAT
GCAAACACCGCGCACATTGACACACCAGGAATGGCGGGCAGCATGAACAA
GAAGAAGGGGATGGTAGTATTTCCTCGGCTGTAAACAAAAGAACCGGCGA
GGGGAGCGGCAGCAGCAGCGATGATGACAACGATGACGAGGTGGAACTGA
GGCTCTCCATGGACAAAGTACGTACTTCCAAAAATCACGAAAGATTTCAA
AGATCCCAAATTGTCCATATTTGTACTTTTCACTCTTGGACATCACTCGA
ACAGGTGGCCATTCAGGCCGAGGCAGAAACAATACAAGAGCAAGAGGAGG
AGGAGGACGTGGAGGATGGAGTCCGGGATGTCGCCTTAACCCAGGTCTTC
CCATCATTAGTACAACAAGAAGACAGTGTAGCGGATGATGAGGAAGTATT
AAAAGGGTAGTCTGTGTCTGAGTGGATTCGGGATGTGGGTGTAGTAAAAG
AGACCAAGAATAATGAAATCGACTTGCTAAGAAGTCTGGTAAATGTATTT
TACTTGATTGCTGTTAGGAAAAACCTTAATGTATTTTACTTGATTGCTGT
back to topCoding sequence (CDS) from alignment at chr1:541322..542871+ >NO01G02130.3 ID=NO01G02130.3|Name=NO01G02130.3|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at chr1:541322..542871+ (Nannochloropsis oceanica) ATGACAAGCACTTCGCCTCAGAAGTGGGCCGAGGAGGACATGCCCCCGCC GCAGCACCAGCAGCAGCAGCAGACCGGTGCGGGGCCGGACAAGGAAATGA TGGAGGTCAAACAGCTTTTAAAGCAGGCATTGGGAGGGGCGGGCATCCTA AACCACGCTAGGGCGTTGCTTGTCGCCGGGGTCCATTTGGTCACGGATAG GTTTGGTGACGGGCAGCGACCCGAGGCCAGCCTCACGCATCTACGGCTTC TACACCCCAATCAACGCGCGATGGCCGCAGCAGAAACAGAAGAAGGGCGA CTCGCATTAGGCTTGGTCGCCGACTTGCTTGATAGTTTAGGTTTAAGGCA CAGCTTGTCCATCTTTCTACCGGAAGCTAATCTCGACGATGGTACAGCAG TGGGGGAGGGGCAGCCGCAGCAGCAGCAACAGCAGCATCCGCCTTCGCAT TGGAGGTCGCTGCAGCAAGCAGTCGTAGAAACGCTCGAGTTGGATTCTGA TACTGGTTCCGAAGATCCTCTCCTCTTACAATTCATGCGCCGCCAGATGG AAAAGAAGCGATTGAGGAGTGAGTCGGAGGCGAAGGAGGAGGGAGAAGAG GGGGATGGAAAAGGAAGGAAGGAGGAGGGAGAAGAAGAAGCGATGCTGGC ACCTGGGGGACAAGAGCAGGCTTTGGCCGCCAGGCAACAAATGGTAGAGA AAAACGGCGTCGAAGAAATAACTGGAGCTGTGGAGGAGGCAATTGCGTAT GAAGAGGAGGAAGAGGAGGGTAGAAGCAGGTGTGTCTTGGGTGAGGGAAA CTGTAGGGGAATGGTTGGAGGCAATGCATCTACTTCAATTGAGTCTTATG TAAAATGTAACGATGCAAACACCGCGCACATTGACACACCAGGAATGGCG GGCAGCATGAACAAGAAGAAGGGGATGGTAGTATTTCCTCGGCTGTAA back to top
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