NO01G02120, NO01G02120 (gene) Nannochloropsis oceanica

Overview
NameNO01G02120
Unique NameNO01G02120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1286
Alignment locationchr1:539801..541086 -

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Properties
Property NameValue
DescriptionCobalamin (Vitamin B12) biosynthesis CbiX
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:539801..541086 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009236cobalamin biosynthetic process
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016852sirohydrochlorin cobaltochelatase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR002762Cbl_biosynth_CbiX
Homology
[Close]
BLAST of NO01G02120 vs. NCBI_GenBank
Match: OUT63447.1 (hypothetical protein CBB70_14040 [Planctomycetaceae bacterium TMED10] >OUW46462.1 hypothetical protein CBD42_07060 [Gammaproteobacteria bacterium TMED182])

HSP 1 Score: 124.0 bits (310), Expect = 7.000e-25
Identity = 59/119 (49.58%), Postives = 80/119 (67.23%), Query Frame = 0 
Query:  129 VGVIVVDHGSRRAEANNALAGVVNDFQALSGYELVEPAHMELAEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPTLLEEAASIFPGVEWALSQPLGSQAEIPRLMQMAVEDCV 248
            +GVI+VDHGSRR E+N  L G+V+ F+  S Y +VE AHMELAEP IATA+  CV++GAT I+ HPFFL  GRH   DIP L  EAA+  P   + ++ PLGS   + +++   +  C+
Sbjct:   10 IGVIIVDHGSRRDESNQMLLGIVDAFRQSSAYAIVEAAHMELAEPCIATAYNACVQQGATLIVVHPFFLLPGRHWDSDIPRLAAEAAAGHPQTSYLVTAPLGSHPLMAQVIDERIAGCL 128
[Close]
BLAST of NO01G02120 vs. NCBI_GenBank
Match: GAQ85114.1 (hypothetical protein KFL_002200010 [Klebsormidium nitens])

HSP 1 Score: 122.1 bits (305), Expect = 2.600e-24
Identity = 56/128 (43.75%), Postives = 88/128 (68.75%), Query Frame = 0 
Query:  129 VGVIVVDHGSRRAEANNALAGVVNDFQALSGYELVEPAHMELAEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPTLLEEAASIFPGVEWALSQPLGSQAEIPRLMQMAVEDCVVEQNIKSED 257
            +GV++VDHGSRRAE+NN L   V+ ++A +G  LVEPAHME+A+PSIA AF + VERGA  ++  P+FLS GRH  +DIP L  EA+   PG+++ ++ P+G    +  +++  ++ C+     K+++
Sbjct:  131 IGVVIVDHGSRRAESNNLLDAFVSLYKAHTGRSLVEPAHMEIAQPSIADAFDKVVERGANVVVVSPYFLSPGRHWFQDIPELAAEASEKHPGIKYLVTAPIGLHPLMADIIEDRIQHCLQRSAGKADE 258
[Close]
BLAST of NO01G02120 vs. NCBI_GenBank
Match: XP_001421596.1 (predicted protein, partial [Ostreococcus lucimarinus CCE9901] >ABO99889.1 predicted protein, partial [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 121.3 bits (303), Expect = 4.500e-24
Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = 0 
Query:  130 GVIVVDHGSRRAEANNALAGVVNDFQALSGYELVEPAHMELAEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPTLLEEAASIFPGVEWALSQPLGSQAEIPRLMQMAVEDCVVEQN 252
            GV+VVDHGSRRA +N  L      +   +G  +VEPAHMELA P+IA AF RCVERGA  ++  PFFLS GRH  EDIP L++EAA+  PGV++ +S P+G    +  ++   +  C+   N
Sbjct:    1 GVVVVDHGSRRAASNEQLERFAALYATATGRAVVEPAHMELAPPTIADAFERCVERGANVVVVAPFFLSPGRHWQEDIPRLVDEAAAAHPGVKYLISAPIGLHPLMAEVIDSRLRHCLAHVN 122
[Close]
BLAST of NO01G02120 vs. NCBI_GenBank
Match: OUS44300.1 (hypothetical protein BE221DRAFT_78412 [Ostreococcus tauri])

HSP 1 Score: 120.9 bits (302), Expect = 5.900e-24
Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = 0 
Query:  129 VGVIVVDHGSRRAEANNALAGVVNDFQALSGYELVEPAHMELAEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPTLLEEAASIFPGVEWALSQPLGSQAEIPRLMQMAVEDCV 248
            +GV++VDHGSRR E+N  L   V  +  ++G ++VE AHMELA PSIA AFGRCVERGA  I+  PFFLS GRH  EDIP L++EAA+   GV   +S P+G    +  ++   +  C+
Sbjct:   61 LGVVIVDHGSRRKESNAQLEVFVEQYARVTGRDIVEAAHMELASPSIADAFGRCVERGANVIVVAPFFLSPGRHWQEDIPQLVKEAAAAHSGVRHVVSAPIGLHPLMVEVIDSRMRHCL 179
[Close]
BLAST of NO01G02120 vs. NCBI_GenBank
Match: XP_002524661.1 (PREDICTED: sirohydrochlorin ferrochelatase isoform X1 [Ricinus communis] >EEF37680.1 sirohydrochlorin ferrochelatase, putative [Ricinus communis])

HSP 1 Score: 120.6 bits (301), Expect = 7.700e-24
Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = 0 
Query:  130 GVIVVDHGSRRAEANNALAGVVNDFQALSGYELVEPAHMELAEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPTLLEEAASIFPGVEWALSQPLGSQAEIPRLMQMAVEDCV 248
            G+I+VDHGSRR E+N  L   VN F+  +GY +VEPAHMELAEPSI  AFG CV++GA  +I  PFFL  GRH  +DIP+L  EAA   PGV + ++ PLG    +  ++   +E C+
Sbjct:   71 GLIIVDHGSRRKESNLMLNEFVNMFRDRTGYPIVEPAHMELAEPSIKDAFGLCVQQGANRVIVSPFFLFPGRHWHQDIPSLTAEAAKEHPGVSYIVTAPLGLHELLVDVLNDRIEHCL 188
[Close]
BLAST of NO01G02120 vs. NCBI_GenBank
Match: WP_052608932.1 (hypothetical protein [Actinobacteria bacterium IMCC26256] >AKL73588.1 CbiX protein [Actinobacteria bacterium IMCC26256])

HSP 1 Score: 120.6 bits (301), Expect = 7.700e-24
Identity = 56/117 (47.86%), Postives = 75/117 (64.10%), Query Frame = 0 
Query:  131 VIVVDHGSRRAEANNALAGVVNDFQALSGYELVEPAHMELAEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPTLLEEAASIFPGVEWALSQPLGSQAEIPRLMQMAVEDCV 248
            +++VDHGSRRAE+N  L G    F     YE+VE AHMELAEP I  AF  C+ERGAT ++  PFFL  G H   DIP L +EAA+  PG+EW ++ P+G  + +  ++   VE C+
Sbjct:    5 LLIVDHGSRRAESNTFLDGFAVSFAEQHKYEIVETAHMELAEPGIGVAFDACIERGATKVVVCPFFLLPGNHWRVDIPALTQEAATRHPGIEWLVTAPIGLHSLMSEVLAATVEGCI 121
[Close]
BLAST of NO01G02120 vs. NCBI_GenBank
Match: XP_015578171.1 (PREDICTED: sirohydrochlorin ferrochelatase isoform X2 [Ricinus communis])

HSP 1 Score: 120.6 bits (301), Expect = 7.700e-24
Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = 0 
Query:  130 GVIVVDHGSRRAEANNALAGVVNDFQALSGYELVEPAHMELAEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPTLLEEAASIFPGVEWALSQPLGSQAEIPRLMQMAVEDCV 248
            G+I+VDHGSRR E+N  L   VN F+  +GY +VEPAHMELAEPSI  AFG CV++GA  +I  PFFL  GRH  +DIP+L  EAA   PGV + ++ PLG    +  ++   +E C+
Sbjct:   70 GLIIVDHGSRRKESNLMLNEFVNMFRDRTGYPIVEPAHMELAEPSIKDAFGLCVQQGANRVIVSPFFLFPGRHWHQDIPSLTAEAAKEHPGVSYIVTAPLGLHELLVDVLNDRIEHCL 187
[Close]
BLAST of NO01G02120 vs. NCBI_GenBank
Match: XP_015578172.1 (PREDICTED: sirohydrochlorin ferrochelatase isoform X3 [Ricinus communis])

HSP 1 Score: 120.6 bits (301), Expect = 7.700e-24
Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = 0 
Query:  130 GVIVVDHGSRRAEANNALAGVVNDFQALSGYELVEPAHMELAEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPTLLEEAASIFPGVEWALSQPLGSQAEIPRLMQMAVEDCV 248
            G+I+VDHGSRR E+N  L   VN F+  +GY +VEPAHMELAEPSI  AFG CV++GA  +I  PFFL  GRH  +DIP+L  EAA   PGV + ++ PLG    +  ++   +E C+
Sbjct:   61 GLIIVDHGSRRKESNLMLNEFVNMFRDRTGYPIVEPAHMELAEPSIKDAFGLCVQQGANRVIVSPFFLFPGRHWHQDIPSLTAEAAKEHPGVSYIVTAPLGLHELLVDVLNDRIEHCL 178
[Close]
BLAST of NO01G02120 vs. NCBI_GenBank
Match: XP_016727493.1 (PREDICTED: sirohydrochlorin ferrochelatase, chloroplastic-like [Gossypium hirsutum])

HSP 1 Score: 120.6 bits (301), Expect = 7.700e-24
Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = 0 
Query:  130 GVIVVDHGSRRAEANNALAGVVNDFQALSGYELVEPAHMELAEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPTLLEEAASIFPGVEWALSQPLGSQAEIPRLMQMAVEDCV 248
            GVI+VDHGSRR E+N  L   V  F+  SGY +VEPAHMELAEPSI  AFG CV+RGA  +I  PFFL  GRH  +DIP L  +AA   PGV + ++ PLG    +  +M   ++ C+
Sbjct:   72 GVIIVDHGSRRKESNLMLNEFVAMFREKSGYPIVEPAHMELAEPSIKDAFGLCVQRGANHVIVSPFFLFPGRHWYQDIPLLTADAAKDHPGVSYIITAPLGLHELLVDVMNDRIKHCL 189
[Close]
BLAST of NO01G02120 vs. NCBI_GenBank
Match: KHG13683.1 (Sirohydrochlorin ferrochelatase [Gossypium arboreum])

HSP 1 Score: 119.8 bits (299), Expect = 1.300e-23
Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = 0 
Query:  130 GVIVVDHGSRRAEANNALAGVVNDFQALSGYELVEPAHMELAEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPTLLEEAASIFPGVEWALSQPLGSQAEIPRLMQMAVEDCV 248
            GVI+VDHGSRR E+N  L   V  F+  SGY +VEPAHMELAEPSI  AFG CV+RGA  +I  PFFL  GRH  +DIP L  +AA   PGV + ++ PLG    +  +M   ++ C+
Sbjct:   72 GVIIVDHGSRRKESNLMLNEFVAMFREKSGYPIVEPAHMELAEPSIKDAFGLCVQRGANRVIVSPFFLFPGRHWYQDIPLLTADAAKDHPGVSYIITAPLGLHELLVDVMNDRIKHCL 189
The following BLAST results are available for this feature:
BLAST of NO01G02120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OUT63447.17.000e-2549.58hypothetical protein CBB70_14040 [Planctomycetacea... [more]
GAQ85114.12.600e-2443.75hypothetical protein KFL_002200010 [Klebsormidium ... [more]
XP_001421596.14.500e-2448.36predicted protein, partial [Ostreococcus lucimarin... [more]
OUS44300.15.900e-2449.58hypothetical protein BE221DRAFT_78412 [Ostreococcu... [more]
XP_002524661.17.700e-2450.85PREDICTED: sirohydrochlorin ferrochelatase isoform... [more]
WP_052608932.17.700e-2447.86hypothetical protein [Actinobacteria bacterium IMC... [more]
XP_015578171.17.700e-2450.85PREDICTED: sirohydrochlorin ferrochelatase isoform... [more]
XP_015578172.17.700e-2450.85PREDICTED: sirohydrochlorin ferrochelatase isoform... [more]
XP_016727493.17.700e-2451.69PREDICTED: sirohydrochlorin ferrochelatase, chloro... [more]
KHG13683.11.300e-2351.69Sirohydrochlorin ferrochelatase [Gossypium arboreu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008129NSK008129Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02120.1NO01G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576510gene_197Nannochloropsis oceanica (N. oceanica CCMP1779)gene
SirBgene1479Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02120.1NO01G02120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02120 ID=NO01G02120|Name=NO01G02120|organism=Nannochloropsis oceanica|type=gene|length=1286bp
ACAGGCAGCACTTTTACAAGTGCACAAGGAAGACGCGCTAGATCCGACTC
GTTGGCTGGTCGCTTTTTCGTTAGTGATCCCGCCTCTGGACAACTATTGC
TGGCTAGCCTAGAGCGCGCGCGCACGCCGATACCATCAACATCCACCCCA
GCCACTCGCCCGCATCACATCGCATCATGTGCAGGTACTCACATTCCTCG
CAGCTGCTCGTGGTCGCACTGCTTGGGACGGCGCAACTTGCCGTCCACGG
GTTCCTCTTACTCAACAAGTCACCACTGGTACAAAATCAGGACGCCCGGT
GGCGACCCAGTCCCAGCAGCGACAGCCTCAGCACCCGCCCCACCACTGCT
ACCATGCACACGGAAGGGCGGATTTGGATGCAGTTCCCAACCTTGTCTGA
CACGCTGCGCGTGAGCAAGGGCCGCGAGGTGGTCATCGAGACGACTGCCA
CCGAGCATTTGGAAGAGGCCGAGATCGAAGTGGACGCTCACGCCTTTCAA
CTGCAACAAGAGCAACAGAGGATACGGGAAAAGTCCCAGGCTCAAGCGAG
AGAGTACAAGGTGGGCGTGATCGTCGTGGATCATGGATCGCGCCGCGCTG
AGGCCAATAATGCGTTGGCCGGCGTTGTGAATGATTTCCAGGCCCTGAGT
GGATATGAGCTGGTGGAGCCCGCCCACATGGAGCTAGCAGAGCCCTCCAT
TGCCACAGCTTTTGGTCGATGCGTGGAACGTGGGGCCACATTTATTATTT
GTCATCCGTTTTTTTTGTCGAGGGGGCGGCATGTGGCGGAAGATATCCCA
ACGTTGTTGGAAGAGGCGGCCTCAATTTTCCCTGGGGTGGAATGGGCTTT
GTCTCAGCCCCTGGGATCGCAGGCGGAGATTCCTCGGTTGATGCAAATGG
CGGTGGAGGATTGTGTGGTGGAGCAGAACATTAAGAGTGAGGACCATGCG
GACGGGTCGCCGTTGCCGGAGTTCAATATTTAGGAGGGAGGGATGTAGCG
ATGATTTGTTTCTGGCGTAATGGATGATTTTGATTTTGAAGGTGCGGAAA
GGAGTATATTTTTGTGGTAAGTGTTTTATATGTAGTTTATTTATGCTCTG
TGTTGCAGAAGCTAGCAAAACGAAGTTACCTTTTAGTTTTATGCTTGCGA
GGATTGGAGCGGGAGGGAGGGCGCGTCCCCTACCACTTAGCGTAGCACGA
AGGGGAATGACGAAAAAAAGAATGTAACGTGTATATAAACATTATAATAA
AGAAAAATGTCGCGGTCAATCCGTCCATTTAACAAT
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protein sequence of NO01G02120.1

>NO01G02120.1-protein ID=NO01G02120.1-protein|Name=NO01G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MCRYSHSSQLLVVALLGTAQLAVHGFLLLNKSPLVQNQDARWRPSPSSDS
LSTRPTTATMHTEGRIWMQFPTLSDTLRVSKGREVVIETTATEHLEEAEI
EVDAHAFQLQQEQQRIREKSQAQAREYKVGVIVVDHGSRRAEANNALAGV
VNDFQALSGYELVEPAHMELAEPSIATAFGRCVERGATFIICHPFFLSRG
RHVAEDIPTLLEEAASIFPGVEWALSQPLGSQAEIPRLMQMAVEDCVVEQ
NIKSEDHADGSPLPEFNI*
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Synonyms
Publications