NO01G02120.1, NO01G02120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02120.1
Unique NameNO01G02120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1286
Alignment locationchr1:539801..541086 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:539801..541086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02120.1 vs.
Match: EWM29197.1 (Cobalamin (vitamin B12) biosynthesis CbiX [Nannochloropsis gaditana])

HSP 1 Score: 296.6 bits (758), Expect = 7.800e-77
Identity = 152/203 (74.88%), Postives = 169/203 (83.25%), Query Frame = 0 
Query:   68 MQFPTLSDTLRVSKGREVVIET--TATEHLEEAEIEVDAHAFQLQQEQQRIREKSQAQAREYKVGVIVVDHGSRRAEANNALAGVVNDFQALSGYELVEPAHMELAEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPTLLEEAASIFPGVEWALSQPLGSQAEIPRLMQMAVEDCVVEQNIKSEDHADGSPLPEFNI 269
            MQ P+ S    V K R  ++ET  TAT+HLE+  IE DAH FQ QQEQQR   + Q + +EYKVGVIVVDHGSRR EAN AL  V ++F+ALSGYELVEPAHMEL EPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIP LLEEAASIFPGVEWALSQPLG QA+IPRLMQ AVE+C+ E+NI+SEDHADG P+PEFNI
Sbjct:   55 MQSPSRSMNSWVPKDRRNMLETLSTATQHLEDLGIEEDAHGFQEQQEQQRRWRRQQQKPKEYKVGVIVVDHGSRRKEANEALESVASEFKALSGYELVEPAHMELCEPSIATAFGRCVERGATFIICHPFFLSRGRHVAEDIPNLLEEAASIFPGVEWALSQPLGLQADIPRLMQQAVEECIAEKNIQSEDHADGLPMPEFNI 257
The following BLAST results are available for this feature:
BLAST of NO01G02120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29197.17.800e-7774.88Cobalamin (vitamin B12) biosynthesis CbiX [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02120NO01G02120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02120.1NO01G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02120.1.cds1NO01G02120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02120.1 ID=NO01G02120.1|Name=NO01G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1286bp
ACAGGCAGCACTTTTACAAGTGCACAAGGAAGACGCGCTAGATCCGACTC
GTTGGCTGGTCGCTTTTTCGTTAGTGATCCCGCCTCTGGACAACTATTGC
TGGCTAGCCTAGAGCGCGCGCGCACGCCGATACCATCAACATCCACCCCA
GCCACTCGCCCGCATCACATCGCATCATGTGCAGGTACTCACATTCCTCG
CAGCTGCTCGTGGTCGCACTGCTTGGGACGGCGCAACTTGCCGTCCACGG
GTTCCTCTTACTCAACAAGTCACCACTGGTACAAAATCAGGACGCCCGGT
GGCGACCCAGTCCCAGCAGCGACAGCCTCAGCACCCGCCCCACCACTGCT
ACCATGCACACGGAAGGGCGGATTTGGATGCAGTTCCCAACCTTGTCTGA
CACGCTGCGCGTGAGCAAGGGCCGCGAGGTGGTCATCGAGACGACTGCCA
CCGAGCATTTGGAAGAGGCCGAGATCGAAGTGGACGCTCACGCCTTTCAA
CTGCAACAAGAGCAACAGAGGATACGGGAAAAGTCCCAGGCTCAAGCGAG
AGAGTACAAGGTGGGCGTGATCGTCGTGGATCATGGATCGCGCCGCGCTG
AGGCCAATAATGCGTTGGCCGGCGTTGTGAATGATTTCCAGGCCCTGAGT
GGATATGAGCTGGTGGAGCCCGCCCACATGGAGCTAGCAGAGCCCTCCAT
TGCCACAGCTTTTGGTCGATGCGTGGAACGTGGGGCCACATTTATTATTT
GTCATCCGTTTTTTTTGTCGAGGGGGCGGCATGTGGCGGAAGATATCCCA
ACGTTGTTGGAAGAGGCGGCCTCAATTTTCCCTGGGGTGGAATGGGCTTT
GTCTCAGCCCCTGGGATCGCAGGCGGAGATTCCTCGGTTGATGCAAATGG
CGGTGGAGGATTGTGTGGTGGAGCAGAACATTAAGAGTGAGGACCATGCG
GACGGGTCGCCGTTGCCGGAGTTCAATATTTAGGAGGGAGGGATGTAGCG
ATGATTTGTTTCTGGCGTAATGGATGATTTTGATTTTGAAGGTGCGGAAA
GGAGTATATTTTTGTGGTAAGTGTTTTATATGTAGTTTATTTATGCTCTG
TGTTGCAGAAGCTAGCAAAACGAAGTTACCTTTTAGTTTTATGCTTGCGA
GGATTGGAGCGGGAGGGAGGGCGCGTCCCCTACCACTTAGCGTAGCACGA
AGGGGAATGACGAAAAAAAGAATGTAACGTGTATATAAACATTATAATAA
AGAAAAATGTCGCGGTCAATCCGTCCATTTAACAAT
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protein sequence of NO01G02120.1

>NO01G02120.1-protein ID=NO01G02120.1-protein|Name=NO01G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MCRYSHSSQLLVVALLGTAQLAVHGFLLLNKSPLVQNQDARWRPSPSSDS
LSTRPTTATMHTEGRIWMQFPTLSDTLRVSKGREVVIETTATEHLEEAEI
EVDAHAFQLQQEQQRIREKSQAQAREYKVGVIVVDHGSRRAEANNALAGV
VNDFQALSGYELVEPAHMELAEPSIATAFGRCVERGATFIICHPFFLSRG
RHVAEDIPTLLEEAASIFPGVEWALSQPLGSQAEIPRLMQMAVEDCVVEQ
NIKSEDHADGSPLPEFNI*
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mRNA from alignment at chr1:539801..541086-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02120.1 ID=NO01G02120.1|Name=NO01G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1286bp|location=Sequence derived from alignment at chr1:539801..541086- (Nannochloropsis oceanica)
ACAGGCAGCACTTTTACAAGTGCACAAGGAAGACGCGCTAGATCCGACTC
GTTGGCTGGTCGCTTTTTCGTTAGTGATCCCGCCTCTGGACAACTATTGC
TGGCTAGCCTAGAGCGCGCGCGCACGCCGATACCATCAACATCCACCCCA
GCCACTCGCCCGCATCACATCGCATCATGTGCAGGTACTCACATTCCTCG
CAGCTGCTCGTGGTCGCACTGCTTGGGACGGCGCAACTTGCCGTCCACGG
GTTCCTCTTACTCAACAAGTCACCACTGGTACAAAATCAGGACGCCCGGT
GGCGACCCAGTCCCAGCAGCGACAGCCTCAGCACCCGCCCCACCACTGCT
ACCATGCACACGGAAGGGCGGATTTGGATGCAGTTCCCAACCTTGTCTGA
CACGCTGCGCGTGAGCAAGGGCCGCGAGGTGGTCATCGAGACGACTGCCA
CCGAGCATTTGGAAGAGGCCGAGATCGAAGTGGACGCTCACGCCTTTCAA
CTGCAACAAGAGCAACAGAGGATACGGGAAAAGTCCCAGGCTCAAGCGAG
AGAGTACAAGGTGGGCGTGATCGTCGTGGATCATGGATCGCGCCGCGCTG
AGGCCAATAATGCGTTGGCCGGCGTTGTGAATGATTTCCAGGCCCTGAGT
GGATATGAGCTGGTGGAGCCCGCCCACATGGAGCTAGCAGAGCCCTCCAT
TGCCACAGCTTTTGGTCGATGCGTGGAACGTGGGGCCACATTTATTATTT
GTCATCCGTTTTTTTTGTCGAGGGGGCGGCATGTGGCGGAAGATATCCCA
ACGTTGTTGGAAGAGGCGGCCTCAATTTTCCCTGGGGTGGAATGGGCTTT
GTCTCAGCCCCTGGGATCGCAGGCGGAGATTCCTCGGTTGATGCAAATGG
CGGTGGAGGATTGTGTGGTGGAGCAGAACATTAAGAGTGAGGACCATGCG
GACGGGTCGCCGTTGCCGGAGTTCAATATTTAGGAGGGAGGGATGTAGCG
ATGATTTGTTTCTGGCGTAATGGATGATTTTGATTTTGAAGGTGCGGAAA
GGAGTATATTTTTGTGGTAAGTGTTTTATATGTAGTTTATTTATGCTCTG
TGTTGCAGAAGCTAGCAAAACGAAGTTACCTTTTAGTTTTATGCTTGCGA
GGATTGGAGCGGGAGGGAGGGCGCGTCCCCTACCACTTAGCGTAGCACGA
AGGGGAATGACGAAAAAAAGAATGTAACGTGTATATAAACATTATAATAA
AGAAAAATGTCGCGGTCAATCCGTCCATTTAACAAT
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Coding sequence (CDS) from alignment at chr1:539801..541086-

>NO01G02120.1 ID=NO01G02120.1|Name=NO01G02120.1|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at chr1:539801..541086- (Nannochloropsis oceanica)
ATGTGCAGGTACTCACATTCCTCGCAGCTGCTCGTGGTCGCACTGCTTGG
GACGGCGCAACTTGCCGTCCACGGGTTCCTCTTACTCAACAAGTCACCAC
TGGTACAAAATCAGGACGCCCGGTGGCGACCCAGTCCCAGCAGCGACAGC
CTCAGCACCCGCCCCACCACTGCTACCATGCACACGGAAGGGCGGATTTG
GATGCAGTTCCCAACCTTGTCTGACACGCTGCGCGTGAGCAAGGGCCGCG
AGGTGGTCATCGAGACGACTGCCACCGAGCATTTGGAAGAGGCCGAGATC
GAAGTGGACGCTCACGCCTTTCAACTGCAACAAGAGCAACAGAGGATACG
GGAAAAGTCCCAGGCTCAAGCGAGAGAGTACAAGGTGGGCGTGATCGTCG
TGGATCATGGATCGCGCCGCGCTGAGGCCAATAATGCGTTGGCCGGCGTT
GTGAATGATTTCCAGGCCCTGAGTGGATATGAGCTGGTGGAGCCCGCCCA
CATGGAGCTAGCAGAGCCCTCCATTGCCACAGCTTTTGGTCGATGCGTGG
AACGTGGGGCCACATTTATTATTTGTCATCCGTTTTTTTTGTCGAGGGGG
CGGCATGTGGCGGAAGATATCCCAACGTTGTTGGAAGAGGCGGCCTCAAT
TTTCCCTGGGGTGGAATGGGCTTTGTCTCAGCCCCTGGGATCGCAGGCGG
AGATTCCTCGGTTGATGCAAATGGCGGTGGAGGATTGTGTGGTGGAGCAG
AACATTAAGAGTGAGGACCATGCGGACGGGTCGCCGTTGCCGGAGTTCAA
TATTTAG
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Synonyms
Publications