NO01G02040, NO01G02040 (gene) Nannochloropsis oceanica

Overview
NameNO01G02040
Unique NameNO01G02040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1394
Alignment locationchr1:517053..518446 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:517053..518446 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO01G02040 vs. NCBI_GenBank
Match: EWM29127.1 (hypothetical protein Naga_100007g27 [Nannochloropsis gaditana])

HSP 1 Score: 201.8 bits (512), Expect = 2.500e-48
Identity = 107/187 (57.22%), Postives = 137/187 (73.26%), Query Frame = 0 
Query:   72 LEAALYDGILAAFQSAGANLLQPPKVETQEGNLSYMVRARHGLDLYELKLSSQRHFVLVRAARSLGAFGQGGVAATGQTHALMDVSMPLIGQVYTLMLDLNRYVVRLADDSVALVNETVLLGNLNDNIFGKYGLEAHTTMPRPMDARGRGGGKRKVIQHWLGNPTTILFASVVMIVAALAIVRRPRK 259
            +EA LYDG + A QSAGA +L+PP VET +GNLSY +RARHG+DLYE+ LSSQR+FVLVRA +   AF +GG AA  +    +D+++PLIGQVYTLMLD+NRYVV LAD S ALVNET+LL NLN+NIFGK+GLEA TT  + +++     G+R +    L  PTTIL+  V + V A+  +R  RK
Sbjct:    1 MEAKLYDGTVVALQSAGARVLRPPAVETHDGNLSYTIRARHGIDLYEIHLSSQRNFVLVRATQCPSAFDKGGSAANERLCTALDLTVPLIGQVYTLMLDINRYVVHLADGSTALVNETLLLANLNENIFGKFGLEALTTDLKLLESHAL--GRRGLWGTGLSLPTTILYGGVAITVLAIVYLRFRRK 185
The following BLAST results are available for this feature:
BLAST of NO01G02040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29127.12.500e-4857.22hypothetical protein Naga_100007g27 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008140NSK008140Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02040.1NO01G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576479gene_185Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g27gene1488Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02040.1NO01G02040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02040 ID=NO01G02040|Name=NO01G02040|organism=Nannochloropsis oceanica|type=gene|length=1394bp
TTATGGGCTTGGGCAGGCGGGATGTAGAAGTGTGCTGCTCCGACACGTCG
GTTTTTGGCGAGTGGGAGCAGCAGTAGATCCCTTGGATCACCCACTGAGC
GGCCCAACACCCATCACCAACCCTGCAGCCTCACACTTCCCTGGTCGACA
TCATTACCAATGACTCTTCGTCGAATGAATGGGAATGAGGGGAACCTGCA
GGTACATTATTTGAACCGAGAATTTATTCTCTCAACCAATGGTGTTTGTC
CGCCCGAAAGGCGCATCAACATCAAATCATCATATTATACAAAAACTACG
GCCCTCCTCGACGACGGTGGCTTCCCTTAAACAAGCTCCAGGGGAGGGTG
CAATCTATTGCTGACAATTTTTCACCCTCGCCAGTCGCTGCATTCAGATT
AGATAATAACTCCATCAGATCTTCCTGGGAGTCCGCACAAAACTCACAGA
CATAACCAGGGGAAGATCATGGCCACCGCCAGCGCAAACGACAAACCTCC
ACCCTTTGACTTTGCGGCCGCGAATGCCTTCAAACTCCAGCAGGCCAAGG
AGCTTTTAGAGCAGGAAGAAGCCAGGAATCCACCTCTCGCTGACGAAGGG
GCAGCAGCTATCGCCTCTGGAAAAGGATACAGTCTGAAGCCGGTGGTGGG
CAACGCGCCGGGGGCAAGTCAAGGCCTGGTGCTGGAAGCGGCGCTCTACG
ACGGAATTTTGGCCGCATTTCAATCCGCGGGCGCAAATTTGCTCCAGCCA
CCCAAGGTCGAGACGCAAGAAGGCAACCTCTCTTACATGGTTCGTGCCCG
TCATGGCCTGGACTTATACGAGCTCAAGCTCTCATCACAGCGGCATTTTG
TACTCGTCCGCGCGGCGCGAAGCTTGGGCGCATTTGGCCAAGGTGGAGTC
GCCGCTACAGGACAGACACACGCGCTTATGGATGTCTCGATGCCTTTGAT
TGGGCAAGTATACACCCTCATGCTCGACTTAAATCGCTACGTCGTGCGTT
TGGCCGACGATTCGGTTGCCTTAGTAAATGAGACTGTGCTGTTGGGTAAT
TTGAATGACAATATTTTCGGTAAGTACGGTTTGGAGGCTCACACGACGAT
GCCAAGGCCGATGGATGCAAGGGGAAGAGGAGGAGGGAAAAGAAAAGTCA
TTCAACACTGGTTAGGCAACCCCACCACTATCCTCTTTGCCTCTGTGGTC
ATGATCGTGGCCGCTCTCGCCATTGTCCGAAGGCCAAGAAAGTAGAAAGG
GAAAGTAGTATCGTGACGCGAGTTAAAGAACAACTATTTAATGTCGGAAG
TGCTGTAATACTCATTCTCTGTGATTTCTCCCTCCCGGCTTAACACTCAC
ATACGCTCTCACGCTTTTGTTGATCGCTATCTATCAAGCTGAAT
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protein sequence of NO01G02040.1

>NO01G02040.1-protein ID=NO01G02040.1-protein|Name=NO01G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MATASANDKPPPFDFAAANAFKLQQAKELLEQEEARNPPLADEGAAAIAS
GKGYSLKPVVGNAPGASQGLVLEAALYDGILAAFQSAGANLLQPPKVETQ
EGNLSYMVRARHGLDLYELKLSSQRHFVLVRAARSLGAFGQGGVAATGQT
HALMDVSMPLIGQVYTLMLDLNRYVVRLADDSVALVNETVLLGNLNDNIF
GKYGLEAHTTMPRPMDARGRGGGKRKVIQHWLGNPTTILFASVVMIVAAL
AIVRRPRK*
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Synonyms
Publications